Wall clock time and date at job start Tue Mar 31 2020 22:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.47052 * 2 1 4 4 C 1.53005 * 109.47143 * 119.99839 * 2 1 3 5 5 C 1.52998 * 109.46995 * 184.99896 * 4 2 1 6 6 C 1.53005 * 109.46995 * 179.97438 * 5 4 2 7 7 N 1.46494 * 109.47292 * 180.02562 * 6 5 4 8 8 C 1.36933 * 120.00364 * 180.02562 * 7 6 5 9 9 H 1.08003 * 119.99478 * 359.97438 * 8 7 6 10 10 C 1.38810 * 120.00169 * 179.97438 * 8 7 6 11 11 N 1.31614 * 120.00199 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 119.99680 * 179.97438 * 10 8 7 13 13 H 1.48495 * 109.47090 * 60.00217 * 12 10 8 14 14 H 1.48503 * 109.46726 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47029 * 299.99575 * 12 10 8 16 16 N 1.46505 * 109.46970 * 239.99847 * 2 1 3 17 17 C 1.34773 * 119.99990 * 85.00330 * 16 2 1 18 18 O 1.21623 * 120.00165 * 359.97438 * 17 16 2 19 19 C 1.47251 * 119.99855 * 179.97438 * 17 16 2 20 20 N 1.30561 * 125.54165 * 180.29280 * 19 17 16 21 21 C 1.30708 * 115.90578 * 180.19061 * 20 19 17 22 22 C 1.50698 * 122.10516 * 179.76226 * 21 20 19 23 23 C 1.53006 * 109.47184 * 254.71758 * 22 21 20 24 24 C 1.52999 * 109.46824 * 134.72511 * 22 21 20 25 25 C 1.52997 * 109.47342 * 14.71983 * 22 21 20 26 26 C 1.34233 * 115.78312 * 359.50250 * 21 20 19 27 27 S 1.71077 * 109.09132 * 0.26340 * 26 21 20 28 28 H 1.09005 * 109.46798 * 59.99852 * 1 2 3 29 29 H 1.08997 * 109.46745 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46991 * 300.00383 * 1 2 3 31 31 H 1.09000 * 109.46562 * 305.00124 * 4 2 1 32 32 H 1.08996 * 109.46934 * 64.99649 * 4 2 1 33 33 H 1.08994 * 109.46989 * 299.99681 * 5 4 2 34 34 H 1.08999 * 109.47082 * 60.00404 * 5 4 2 35 35 H 1.09000 * 109.46562 * 300.00228 * 6 5 4 36 36 H 1.08996 * 109.46934 * 59.99753 * 6 5 4 37 37 H 0.97000 * 119.99575 * 359.97438 * 7 6 5 38 38 H 0.96996 * 120.00360 * 180.02562 * 11 10 8 39 39 H 0.96998 * 119.99564 * 264.99731 * 16 2 1 40 40 H 1.09001 * 109.46801 * 300.00442 * 23 22 21 41 41 H 1.09001 * 109.46998 * 60.00038 * 23 22 21 42 42 H 1.09000 * 109.47050 * 180.02562 * 23 22 21 43 43 H 1.09000 * 109.47160 * 179.97438 * 24 22 21 44 44 H 1.09002 * 109.46719 * 299.99679 * 24 22 21 45 45 H 1.08993 * 109.47839 * 59.99520 * 24 22 21 46 46 H 1.09001 * 109.47375 * 299.99730 * 25 22 21 47 47 H 1.09002 * 109.46777 * 60.00285 * 25 22 21 48 48 H 1.09000 * 109.47140 * 179.97438 * 25 22 21 49 49 H 1.07996 * 125.45132 * 180.22848 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5649 -0.6133 1.3137 6 6 4.0748 -1.3340 2.5633 7 7 5.5348 -1.2301 2.6254 8 6 6.2186 -1.8042 3.6636 9 1 5.6815 -2.3332 4.4370 10 6 7.6020 -1.7062 3.7221 11 7 8.2565 -1.0611 2.7799 12 14 8.5346 -2.4888 5.1389 13 1 8.2777 -3.9513 5.1528 14 1 9.9893 -2.2429 4.9696 15 1 8.0784 -1.8936 6.4206 16 7 2.0184 -0.6907 -1.1962 17 6 2.1471 -0.0183 -2.3571 18 8 1.8575 1.1616 -2.4119 19 6 2.6385 -0.7124 -3.5593 20 7 2.8093 -0.1678 -4.7335 21 6 3.2526 -0.9620 -5.6723 22 6 3.4947 -0.4812 -7.0798 23 6 2.3819 -0.9981 -7.9939 24 6 4.8446 -1.0062 -7.5729 25 6 3.5035 1.0486 -7.1019 26 6 3.4837 -2.2314 -5.3022 27 16 3.0986 -2.4101 -3.6449 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6054 -0.2616 2.1370 32 1 1.7516 -1.7714 1.2057 33 1 3.9994 -1.0729 0.4260 34 1 3.8532 0.4370 1.3574 35 1 3.6401 -0.8740 3.4508 36 1 3.7864 -2.3842 2.5202 37 1 6.0171 -0.7553 1.9306 38 1 9.2232 -0.9929 2.8205 39 1 2.2491 -1.6318 -1.1525 40 1 2.3757 -2.0880 -7.9781 41 1 1.4202 -0.6242 -7.6426 42 1 2.5573 -0.6507 -9.0121 43 1 5.0196 -0.6589 -8.5912 44 1 5.6374 -0.6380 -6.9217 45 1 4.8384 -2.0960 -7.5572 46 1 2.5417 1.4226 -6.7507 47 1 4.2963 1.4167 -6.4508 48 1 3.6790 1.3963 -8.1199 49 1 3.8530 -3.0147 -5.9475 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283190603.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:05 Heat of formation + Delta-G solvation = -4.772555 kcal Electronic energy + Delta-G solvation = -26686.413018 eV Core-core repulsion = 22967.882244 eV Total energy + Delta-G solvation = -3718.530774 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.80331 -39.73538 -36.91447 -36.17988 -34.86902 -32.72888 -31.42076 -30.29127 -29.40915 -27.79640 -27.60495 -26.20171 -25.61698 -23.50702 -22.73100 -20.95575 -20.78963 -20.54206 -19.38743 -18.27228 -17.08969 -16.98981 -16.50908 -15.77554 -15.62251 -14.79374 -14.74882 -14.66810 -14.26063 -14.19717 -13.90945 -13.69366 -13.67608 -13.41700 -13.01615 -12.74352 -12.62891 -12.49081 -12.41017 -12.25392 -12.12633 -11.94650 -11.34366 -11.27262 -11.24613 -11.20585 -11.11400 -10.85104 -10.82002 -10.59752 -10.47316 -10.39949 -10.03607 -9.96315 -9.84585 -9.68679 -9.31732 -8.99938 -8.85661 -6.90906 -5.75014 -3.03916 -0.01534 0.90099 1.31733 2.09999 2.63199 3.03166 3.44366 3.48436 3.49863 3.93976 4.39218 4.48075 4.57185 4.66180 4.72431 4.80350 4.88283 4.98265 5.00548 5.10269 5.25651 5.38891 5.39328 5.43815 5.49985 5.50953 5.58033 5.59404 5.59761 5.66519 5.73748 5.74079 5.90934 5.91712 5.98601 6.03682 6.05888 6.17516 6.18297 6.33236 6.34646 6.40205 6.85929 6.89291 7.09504 7.41965 7.70005 7.91515 8.43968 9.54602 10.13714 10.47886 11.47879 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011410 B = 0.002416 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.321475 B =11588.842388 C =13199.439895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.143 3.857 3 H 0.094 0.906 4 C -0.123 4.123 5 C -0.128 4.128 6 C 0.153 3.847 7 N -0.735 5.735 8 C -0.240 4.240 9 H 0.069 0.931 10 C -0.015 4.015 11 N -0.934 5.934 12 Si 0.908 3.092 13 H -0.286 1.286 14 H -0.291 1.291 15 H -0.286 1.286 16 N -0.711 5.711 17 C 0.597 3.403 18 O -0.501 6.501 19 C -0.004 4.004 20 N -0.390 5.390 21 C 0.069 3.931 22 C 0.004 3.996 23 C -0.137 4.137 24 C -0.141 4.141 25 C -0.132 4.132 26 C -0.261 4.261 27 S 0.185 5.815 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.018 0.982 36 H 0.017 0.983 37 H 0.383 0.617 38 H 0.256 0.744 39 H 0.399 0.601 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.060 0.940 45 H 0.057 0.943 46 H 0.065 0.935 47 H 0.058 0.942 48 H 0.055 0.945 49 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.907 -2.945 -21.040 26.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.040 3.960 3 H 0.112 0.888 4 C -0.162 4.162 5 C -0.166 4.166 6 C 0.026 3.974 7 N -0.379 5.379 8 C -0.371 4.371 9 H 0.087 0.913 10 C -0.211 4.211 11 N -0.583 5.583 12 Si 0.738 3.262 13 H -0.213 1.213 14 H -0.217 1.217 15 H -0.213 1.213 16 N -0.364 5.364 17 C 0.379 3.621 18 O -0.374 6.374 19 C -0.280 4.280 20 N -0.105 5.105 21 C -0.069 4.069 22 C 0.001 3.999 23 C -0.195 4.195 24 C -0.199 4.199 25 C -0.189 4.189 26 C -0.402 4.402 27 S 0.441 5.559 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.036 0.964 36 H 0.035 0.965 37 H 0.217 0.783 38 H 0.065 0.935 39 H 0.234 0.766 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.079 0.921 45 H 0.076 0.924 46 H 0.084 0.916 47 H 0.077 0.923 48 H 0.074 0.926 49 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -16.185 -2.423 -20.185 25.986 hybrid contribution 1.171 -0.645 -0.350 1.382 sum -15.014 -3.068 -20.536 25.624 Atomic orbital electron populations 1.22193 0.95014 1.02248 1.02740 1.21167 0.93881 0.97929 0.83032 0.88766 1.21874 0.96994 1.00877 0.96441 1.21758 0.93554 1.01655 0.99594 1.20642 0.86223 0.96428 0.94150 1.42373 1.00194 1.66274 1.29021 1.19193 0.89435 1.27208 1.01312 0.91259 1.24754 0.96468 1.01229 0.98642 1.69650 1.07267 1.46910 1.34438 0.86262 0.78988 0.78947 0.81958 1.21279 1.21681 1.21261 1.45901 1.67287 1.13983 1.09259 1.16657 0.78234 0.86049 0.81202 1.90851 1.48408 1.14356 1.83822 1.27480 1.09174 0.94153 0.97230 1.66440 1.10833 1.35029 0.98223 1.20225 1.01112 0.88735 0.96845 1.19217 0.96244 0.97020 0.87434 1.21890 0.97845 1.00887 0.98870 1.21945 0.95494 1.00912 1.01500 1.21732 1.03361 0.92654 1.01188 1.26486 1.10619 1.02486 1.00609 1.83934 1.55782 1.11354 1.04865 0.92148 0.92335 0.91144 0.89833 0.91238 0.92128 0.91768 0.96444 0.96549 0.78329 0.93463 0.76583 0.92526 0.92295 0.91694 0.91617 0.92107 0.92419 0.91572 0.92297 0.92594 0.79945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 9.48 37.16 0.35 -1.19 16 2 C 0.14 1.60 2.57 -67.92 -0.17 1.42 16 3 H 0.09 1.22 7.58 -51.93 -0.39 0.83 16 4 C -0.12 -1.39 4.75 -26.73 -0.13 -1.52 16 5 C -0.13 -1.98 5.22 -26.73 -0.14 -2.12 16 6 C 0.15 3.02 6.26 -4.04 -0.03 3.00 16 7 N -0.73 -18.91 5.60 -59.91 -0.34 -19.25 16 8 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 9 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 10 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 11 N -0.93 -28.66 13.06 55.49 0.72 -27.94 16 12 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 15 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 16 N -0.71 -8.05 4.53 -54.93 -0.25 -8.30 16 17 C 0.60 8.31 7.77 -12.60 -0.10 8.22 16 18 O -0.50 -8.70 16.73 5.26 0.09 -8.62 16 19 C 0.00 -0.05 7.46 -14.43 -0.11 -0.16 16 20 N -0.39 -5.26 9.52 -7.69 -0.07 -5.33 16 21 C 0.07 0.74 5.38 -84.48 -0.45 0.29 16 22 C 0.00 0.03 0.90 -155.66 -0.14 -0.11 16 23 C -0.14 -0.96 8.42 37.16 0.31 -0.65 16 24 C -0.14 -0.99 8.12 37.16 0.30 -0.69 16 25 C -0.13 -1.25 7.89 37.16 0.29 -0.96 16 26 C -0.26 -2.32 10.10 29.32 0.30 -2.02 16 27 S 0.18 1.71 22.31 -107.50 -2.40 -0.69 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.95 7.75 -51.93 -0.40 0.55 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.38 10.43 7.67 -40.82 -0.31 10.11 16 38 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 39 H 0.40 3.77 7.75 -40.82 -0.32 3.46 16 40 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.06 0.34 7.07 -51.93 -0.37 -0.03 16 46 H 0.07 0.72 7.95 -51.93 -0.41 0.30 16 47 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 48 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.18 1.12 7.23 -52.49 -0.38 0.74 16 LS Contribution 413.71 15.07 6.23 6.23 Total: -1.00 -34.41 413.71 -9.46 -43.87 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -8.47 Total: 6.47 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: 0.04 Total: -3.98 kcal Atomic # 7 Polarization: -60.88 SS G_CDS: 0.07 Total: -60.82 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: 0.09 Total: -8.62 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Atomic # 16 Polarization: 1.71 SS G_CDS: -2.40 Total: -0.69 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -34.41 -9.46 -43.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283190603.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.098 kcal (2) G-P(sol) polarization free energy of solvation -34.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds