Wall clock time and date at job start Tue Mar 31 2020 22:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.47052 * 2 1 4 4 C 1.53005 * 109.47143 * 119.99839 * 2 1 3 5 5 C 1.52998 * 109.46995 * 184.99896 * 4 2 1 6 6 C 1.53005 * 109.46995 * 179.97438 * 5 4 2 7 7 N 1.46494 * 109.47292 * 180.02562 * 6 5 4 8 8 C 1.36933 * 120.00364 * 180.02562 * 7 6 5 9 9 H 1.08003 * 119.99478 * 359.97438 * 8 7 6 10 10 C 1.38810 * 120.00169 * 179.97438 * 8 7 6 11 11 N 1.31614 * 120.00199 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 119.99680 * 179.97438 * 10 8 7 13 13 H 1.48495 * 109.47090 * 60.00217 * 12 10 8 14 14 H 1.48503 * 109.46726 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47029 * 299.99575 * 12 10 8 16 16 N 1.46505 * 109.46970 * 239.99847 * 2 1 3 17 17 C 1.34773 * 119.99990 * 85.00330 * 16 2 1 18 18 O 1.21623 * 120.00165 * 359.97438 * 17 16 2 19 19 C 1.47251 * 119.99855 * 179.97438 * 17 16 2 20 20 N 1.30561 * 125.54165 * 180.29280 * 19 17 16 21 21 C 1.30708 * 115.90578 * 180.19061 * 20 19 17 22 22 C 1.50698 * 122.10516 * 179.76226 * 21 20 19 23 23 C 1.53006 * 109.47184 * 254.71758 * 22 21 20 24 24 C 1.52999 * 109.46824 * 134.72511 * 22 21 20 25 25 C 1.52997 * 109.47342 * 14.71983 * 22 21 20 26 26 C 1.34233 * 115.78312 * 359.50250 * 21 20 19 27 27 S 1.71077 * 109.09132 * 0.26340 * 26 21 20 28 28 H 1.09005 * 109.46798 * 59.99852 * 1 2 3 29 29 H 1.08997 * 109.46745 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46991 * 300.00383 * 1 2 3 31 31 H 1.09000 * 109.46562 * 305.00124 * 4 2 1 32 32 H 1.08996 * 109.46934 * 64.99649 * 4 2 1 33 33 H 1.08994 * 109.46989 * 299.99681 * 5 4 2 34 34 H 1.08999 * 109.47082 * 60.00404 * 5 4 2 35 35 H 1.09000 * 109.46562 * 300.00228 * 6 5 4 36 36 H 1.08996 * 109.46934 * 59.99753 * 6 5 4 37 37 H 0.97000 * 119.99575 * 359.97438 * 7 6 5 38 38 H 0.96996 * 120.00360 * 180.02562 * 11 10 8 39 39 H 0.96998 * 119.99564 * 264.99731 * 16 2 1 40 40 H 1.09001 * 109.46801 * 300.00442 * 23 22 21 41 41 H 1.09001 * 109.46998 * 60.00038 * 23 22 21 42 42 H 1.09000 * 109.47050 * 180.02562 * 23 22 21 43 43 H 1.09000 * 109.47160 * 179.97438 * 24 22 21 44 44 H 1.09002 * 109.46719 * 299.99679 * 24 22 21 45 45 H 1.08993 * 109.47839 * 59.99520 * 24 22 21 46 46 H 1.09001 * 109.47375 * 299.99730 * 25 22 21 47 47 H 1.09002 * 109.46777 * 60.00285 * 25 22 21 48 48 H 1.09000 * 109.47140 * 179.97438 * 25 22 21 49 49 H 1.07996 * 125.45132 * 180.22848 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5649 -0.6133 1.3137 6 6 4.0748 -1.3340 2.5633 7 7 5.5348 -1.2301 2.6254 8 6 6.2186 -1.8042 3.6636 9 1 5.6815 -2.3332 4.4370 10 6 7.6020 -1.7062 3.7221 11 7 8.2565 -1.0611 2.7799 12 14 8.5346 -2.4888 5.1389 13 1 8.2777 -3.9513 5.1528 14 1 9.9893 -2.2429 4.9696 15 1 8.0784 -1.8936 6.4206 16 7 2.0184 -0.6907 -1.1962 17 6 2.1471 -0.0183 -2.3571 18 8 1.8575 1.1616 -2.4119 19 6 2.6385 -0.7124 -3.5593 20 7 2.8093 -0.1678 -4.7335 21 6 3.2526 -0.9620 -5.6723 22 6 3.4947 -0.4812 -7.0798 23 6 2.3819 -0.9981 -7.9939 24 6 4.8446 -1.0062 -7.5729 25 6 3.5035 1.0486 -7.1019 26 6 3.4837 -2.2314 -5.3022 27 16 3.0986 -2.4101 -3.6449 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6054 -0.2616 2.1370 32 1 1.7516 -1.7714 1.2057 33 1 3.9994 -1.0729 0.4260 34 1 3.8532 0.4370 1.3574 35 1 3.6401 -0.8740 3.4508 36 1 3.7864 -2.3842 2.5202 37 1 6.0171 -0.7553 1.9306 38 1 9.2232 -0.9929 2.8205 39 1 2.2491 -1.6318 -1.1525 40 1 2.3757 -2.0880 -7.9781 41 1 1.4202 -0.6242 -7.6426 42 1 2.5573 -0.6507 -9.0121 43 1 5.0196 -0.6589 -8.5912 44 1 5.6374 -0.6380 -6.9217 45 1 4.8384 -2.0960 -7.5572 46 1 2.5417 1.4226 -6.7507 47 1 4.2963 1.4167 -6.4508 48 1 3.6790 1.3963 -8.1199 49 1 3.8530 -3.0147 -5.9475 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283190603.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:04 Heat of formation + Delta-G solvation = -27.540291 kcal Electronic energy + Delta-G solvation = -26687.400301 eV Core-core repulsion = 22967.882244 eV Total energy + Delta-G solvation = -3719.518057 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.65451 -40.70312 -38.03897 -36.97347 -36.51669 -34.26918 -32.83270 -31.30226 -30.72944 -28.51339 -28.14763 -27.27452 -26.91405 -24.89632 -23.96957 -22.37398 -21.81442 -21.46322 -20.19040 -19.15068 -19.02463 -17.93587 -17.50661 -16.72579 -16.61686 -16.41688 -15.90812 -15.63742 -15.41489 -15.32470 -15.14346 -14.83221 -14.59980 -14.45479 -14.36573 -13.85666 -13.44473 -13.32760 -13.20404 -13.07163 -13.02811 -13.01732 -12.73336 -12.58301 -12.40201 -12.29398 -12.10014 -11.94784 -11.91800 -11.87512 -11.80726 -11.72784 -11.52341 -11.48642 -10.91527 -10.76670 -10.74668 -10.32298 -9.77506 -8.99932 -7.94975 -5.24380 -0.85912 0.08793 0.53911 1.22057 1.47125 1.50745 1.56880 1.71891 2.07535 2.56394 3.18005 3.38621 3.55970 3.68207 3.80770 3.95988 4.03240 4.09743 4.14248 4.23893 4.27509 4.29265 4.39550 4.58149 4.64607 4.75047 4.76357 4.80182 4.83161 4.86490 4.87515 4.89153 4.98341 4.99904 5.00393 5.11222 5.13882 5.29132 5.30399 5.31552 5.40130 5.42174 5.43377 5.48655 5.51036 6.18197 6.27289 6.60815 6.93572 7.32740 8.10513 8.32080 9.28680 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011410 B = 0.002416 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.321475 B =11588.842388 C =13199.439895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.144 3.856 3 H 0.070 0.930 4 C -0.109 4.109 5 C -0.117 4.117 6 C 0.150 3.850 7 N -0.751 5.751 8 C -0.246 4.246 9 H 0.078 0.922 10 C -0.080 4.080 11 N -0.973 5.973 12 Si 0.976 3.024 13 H -0.274 1.274 14 H -0.296 1.296 15 H -0.278 1.278 16 N -0.700 5.700 17 C 0.595 3.405 18 O -0.550 6.550 19 C -0.049 4.049 20 N -0.422 5.422 21 C 0.047 3.953 22 C 0.001 3.999 23 C -0.132 4.132 24 C -0.137 4.137 25 C -0.129 4.129 26 C -0.250 4.250 27 S 0.245 5.755 28 H 0.042 0.958 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.056 0.944 34 H 0.046 0.954 35 H 0.021 0.979 36 H 0.029 0.971 37 H 0.371 0.629 38 H 0.251 0.749 39 H 0.410 0.590 40 H 0.070 0.930 41 H 0.042 0.958 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.044 0.956 45 H 0.075 0.925 46 H 0.043 0.957 47 H 0.036 0.964 48 H 0.076 0.924 49 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.663 -5.763 -21.252 27.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.040 3.960 3 H 0.088 0.912 4 C -0.147 4.147 5 C -0.155 4.155 6 C 0.024 3.976 7 N -0.394 5.394 8 C -0.378 4.378 9 H 0.096 0.904 10 C -0.272 4.272 11 N -0.623 5.623 12 Si 0.804 3.196 13 H -0.200 1.200 14 H -0.223 1.223 15 H -0.204 1.204 16 N -0.353 5.353 17 C 0.378 3.622 18 O -0.428 6.428 19 C -0.323 4.323 20 N -0.139 5.139 21 C -0.091 4.091 22 C -0.001 4.001 23 C -0.190 4.190 24 C -0.195 4.195 25 C -0.186 4.186 26 C -0.390 4.390 27 S 0.501 5.499 28 H 0.061 0.939 29 H 0.096 0.904 30 H 0.104 0.896 31 H 0.117 0.883 32 H 0.111 0.889 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.039 0.961 36 H 0.047 0.953 37 H 0.202 0.798 38 H 0.060 0.940 39 H 0.247 0.753 40 H 0.089 0.911 41 H 0.061 0.939 42 H 0.099 0.901 43 H 0.099 0.901 44 H 0.064 0.936 45 H 0.094 0.906 46 H 0.063 0.937 47 H 0.056 0.944 48 H 0.094 0.906 49 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -16.996 -5.283 -20.360 27.043 hybrid contribution 1.378 0.177 -0.315 1.424 sum -15.619 -5.106 -20.675 26.410 Atomic orbital electron populations 1.22124 0.93164 1.03446 1.02660 1.21156 0.95241 0.96728 0.82849 0.91166 1.21785 0.93508 1.02534 0.96921 1.21631 0.96572 0.99851 0.97408 1.20861 0.83087 0.97531 0.96117 1.42662 1.02625 1.65947 1.28148 1.19648 0.89993 1.26381 1.01794 0.90381 1.25632 0.97585 1.02490 1.01447 1.69822 1.07076 1.48865 1.36572 0.85177 0.76993 0.78470 0.78929 1.20025 1.22280 1.20366 1.45851 1.66412 1.14342 1.08663 1.16949 0.77557 0.85638 0.82101 1.90807 1.50810 1.16410 1.84746 1.27267 1.11676 0.96532 0.96816 1.66426 1.11489 1.36924 0.99098 1.20594 1.01721 0.89378 0.97376 1.19340 0.97870 0.96041 0.86880 1.21860 0.96286 1.01709 0.99137 1.21934 0.93731 1.01965 1.01866 1.21691 1.01260 0.93985 1.01693 1.26971 1.08558 1.02534 1.00963 1.83628 1.53882 1.07734 1.04687 0.93867 0.90427 0.89620 0.88336 0.88856 0.92570 0.93526 0.96074 0.95345 0.79786 0.94041 0.75343 0.91066 0.93885 0.90085 0.90097 0.93645 0.90626 0.93748 0.94447 0.90557 0.76617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 9.48 71.98 0.68 -2.05 16 2 C 0.14 3.13 2.57 44.99 0.12 3.24 16 3 H 0.07 1.90 7.58 -2.39 -0.02 1.88 16 4 C -0.11 -2.24 4.75 30.60 0.15 -2.09 16 5 C -0.12 -3.54 5.22 30.60 0.16 -3.38 16 6 C 0.15 5.75 6.26 86.38 0.54 6.29 16 7 N -0.75 -38.73 5.60 -343.46 -1.92 -40.65 16 8 C -0.25 -13.87 9.99 84.03 0.84 -13.03 16 9 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 10 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 11 N -0.97 -60.57 13.06 21.65 0.28 -60.29 16 12 Si 0.98 46.21 29.55 68.60 2.03 48.24 16 13 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 14 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 15 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 16 N -0.70 -15.74 4.53 -445.94 -2.02 -17.76 16 17 C 0.59 17.35 7.77 86.61 0.67 18.03 16 18 O -0.55 -20.59 16.73 -4.10 -0.07 -20.66 16 19 C -0.05 -1.28 7.46 87.25 0.65 -0.63 16 20 N -0.42 -11.90 9.52 -178.24 -1.70 -13.60 16 21 C 0.05 1.00 5.38 41.81 0.22 1.22 16 22 C 0.00 0.02 0.90 -52.93 -0.05 -0.02 16 23 C -0.13 -1.63 8.42 71.98 0.61 -1.03 16 24 C -0.14 -1.66 8.12 71.98 0.58 -1.08 16 25 C -0.13 -2.54 7.89 71.98 0.57 -1.98 16 26 C -0.25 -3.89 10.10 66.91 0.68 -3.22 16 27 S 0.25 4.13 22.31 -56.49 -1.26 2.87 16 28 H 0.04 0.92 8.14 -2.38 -0.02 0.90 16 29 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 31 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.06 1.74 7.75 -2.39 -0.02 1.72 16 34 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.37 20.60 7.67 -92.71 -0.71 19.89 16 38 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 39 H 0.41 7.25 7.75 -92.71 -0.72 6.53 16 40 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.08 0.73 8.14 -2.39 -0.02 0.72 16 44 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.07 0.63 7.07 -2.39 -0.02 0.62 16 46 H 0.04 1.05 7.95 -2.39 -0.02 1.03 16 47 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 48 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 49 H 0.22 1.77 7.23 -2.91 -0.02 1.74 16 Total: -1.00 -77.41 413.71 1.74 -75.67 By element: Atomic # 1 Polarization: 30.55 SS G_CDS: -0.49 Total: 30.06 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: 6.89 Total: -3.88 kcal Atomic # 7 Polarization: -126.94 SS G_CDS: -5.36 Total: -132.30 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.07 Total: -20.66 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Atomic # 16 Polarization: 4.13 SS G_CDS: -1.26 Total: 2.87 kcal Total: -77.41 1.74 -75.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283190603.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.129 kcal (2) G-P(sol) polarization free energy of solvation -77.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds