Wall clock time and date at job start Tue Mar 31 2020 22:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46768 * 2 1 4 4 N 1.46498 * 109.47360 * 239.99692 * 2 1 3 5 5 C 1.34775 * 119.99702 * 84.72191 * 4 2 1 6 6 O 1.21279 * 120.00444 * 0.27947 * 5 4 2 7 7 C 1.50707 * 119.99723 * 180.27573 * 5 4 2 8 8 N 1.46500 * 109.46742 * 180.02562 * 7 5 4 9 9 C 1.34604 * 126.43261 * 125.00401 * 8 7 5 10 10 N 1.31076 * 106.67318 * 180.02562 * 9 8 7 11 11 N 1.28838 * 107.99018 * 359.97438 * 10 9 8 12 12 N 1.28733 * 109.39940 * 359.73678 * 11 10 9 13 13 C 1.50703 * 109.46951 * 119.99851 * 2 1 3 14 14 O 1.21277 * 120.00163 * 120.00145 * 13 2 1 15 15 N 1.34780 * 119.99828 * 300.00075 * 13 2 1 16 16 C 1.46501 * 119.99903 * 180.02562 * 15 13 2 17 17 C 1.52997 * 109.46965 * 179.97438 * 16 15 13 18 18 C 1.53002 * 109.47154 * 179.97438 * 17 16 15 19 19 N 1.46501 * 109.47339 * 179.97438 * 18 17 16 20 20 C 1.46497 * 119.99421 * 90.00635 * 19 18 17 21 21 C 1.36931 * 120.00389 * 270.00597 * 19 18 17 22 22 H 1.08000 * 120.00367 * 23.04372 * 21 19 18 23 23 C 1.38812 * 119.99986 * 203.04897 * 21 19 18 24 24 N 1.31617 * 120.00020 * 12.93256 * 23 21 19 25 25 Si 1.86802 * 119.99840 * 192.93968 * 23 21 19 26 26 H 1.48502 * 109.47176 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47215 * 119.99396 * 25 23 21 28 28 H 1.48504 * 109.46961 * 239.99355 * 25 23 21 29 29 H 1.09000 * 109.47182 * 60.00346 * 1 2 3 30 30 H 1.09006 * 109.47360 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47689 * 300.00071 * 1 2 3 32 32 H 0.96998 * 119.99888 * 264.99947 * 4 2 1 33 33 H 1.08996 * 109.47012 * 300.00155 * 7 5 4 34 34 H 1.08998 * 109.46999 * 59.99936 * 7 5 4 35 35 H 1.07995 * 126.66224 * 0.02808 * 9 8 7 36 36 H 0.96999 * 120.00219 * 0.02562 * 15 13 2 37 37 H 1.08999 * 109.47199 * 299.99665 * 16 15 13 38 38 H 1.08996 * 109.47321 * 60.00045 * 16 15 13 39 39 H 1.09000 * 109.47577 * 299.99955 * 17 16 15 40 40 H 1.09000 * 109.47339 * 60.00147 * 17 16 15 41 41 H 1.09000 * 109.47328 * 300.00702 * 18 17 16 42 42 H 1.09012 * 109.46828 * 60.00147 * 18 17 16 43 43 H 1.09001 * 109.47642 * 95.12678 * 20 19 18 44 44 H 1.09006 * 109.47146 * 215.11940 * 20 19 18 45 45 H 1.09004 * 109.47460 * 335.11858 * 20 19 18 46 46 H 0.97003 * 120.00148 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1418 -0.0197 -2.3584 6 8 1.8533 1.1570 -2.4130 7 6 2.6383 -0.7317 -3.5904 8 7 2.6830 0.2085 -4.7130 9 6 3.7521 0.4833 -5.4834 10 7 3.3625 1.3729 -6.3638 11 7 2.1191 1.6304 -6.1457 12 7 1.7039 0.9242 -5.1527 13 6 2.0323 -0.7104 1.2305 14 8 2.7295 -1.6964 1.1193 15 7 1.7066 -0.2499 2.4546 16 6 2.1954 -0.9401 3.6508 17 6 1.6857 -0.2185 4.9000 18 6 2.1956 -0.9397 6.1493 19 7 1.7082 -0.2484 7.3454 20 6 0.4281 -0.6348 7.9440 21 6 2.4489 0.7587 7.9039 22 1 3.1681 1.2966 7.3041 23 6 2.2756 1.0883 9.2412 24 7 1.5996 0.2848 10.0347 25 14 3.0017 2.6723 9.9144 26 1 3.7107 3.3933 8.8268 27 1 1.9123 3.5286 10.4482 28 1 3.9599 2.3540 11.0034 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 2.2491 -1.6318 -1.1525 33 1 3.6383 -1.1238 -3.4052 34 1 1.9645 -1.5539 -3.8312 35 1 4.7390 0.0542 -5.3936 36 1 1.1487 0.5386 2.5436 37 1 1.8324 -1.9679 3.6511 38 1 3.2853 -0.9397 3.6507 39 1 2.0490 0.8092 4.8996 40 1 0.5957 -0.2185 4.9004 41 1 1.8321 -1.9673 6.1495 42 1 3.2857 -0.9400 6.1492 43 1 0.6039 -1.3490 8.7484 44 1 -0.0670 0.2496 8.3453 45 1 -0.2052 -1.0921 7.1838 46 1 1.4781 0.5153 10.9691 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316858529.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:36 Heat of formation + Delta-G solvation = 76.322457 kcal Electronic energy + Delta-G solvation = -28176.670102 eV Core-core repulsion = 23947.655409 eV Total energy + Delta-G solvation = -4229.014693 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -44.58779 -40.93066 -39.66881 -36.53542 -36.06950 -35.45962 -34.98133 -32.90453 -32.48081 -31.57308 -30.01007 -29.19851 -26.17153 -25.74765 -24.78046 -24.26017 -23.64086 -22.10523 -21.32756 -20.87381 -20.18615 -18.87650 -18.37141 -17.33001 -17.06774 -16.75291 -16.52834 -16.33594 -16.09273 -15.78276 -15.39068 -14.87371 -14.64990 -14.39696 -14.04939 -13.91544 -13.41308 -13.30065 -13.11702 -12.88664 -12.82123 -12.77380 -12.53592 -12.15018 -11.81849 -11.65676 -11.55355 -11.54621 -11.12253 -10.88891 -10.87312 -10.85787 -10.55144 -10.54347 -10.29462 -10.20997 -9.92053 -9.87665 -9.79762 -9.24477 -8.60396 -6.80288 -5.77459 -3.24988 0.77104 1.27857 1.74948 1.88493 2.21472 2.25437 2.98454 3.33516 3.41036 3.42674 3.53544 3.74179 3.81590 4.05027 4.24732 4.31430 4.44841 4.52602 4.63149 4.95803 5.03591 5.11774 5.22279 5.26452 5.30591 5.37715 5.54965 5.63021 5.65928 5.67124 5.78614 5.96649 6.00301 6.30446 6.33733 6.65563 6.67744 6.69677 6.84203 7.19086 7.31565 7.40165 7.67897 7.75745 7.84493 8.20381 8.34788 9.18653 9.82062 10.30729 11.27295 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.024585 B = 0.001560 C = 0.001519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.641364 B =17947.022835 C =18430.186024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.126 3.874 3 H 0.117 0.883 4 N -0.704 5.704 5 C 0.505 3.495 6 O -0.508 6.508 7 C 0.098 3.902 8 N -0.302 5.302 9 C 0.162 3.838 10 N -0.306 5.306 11 N -0.077 5.077 12 N -0.064 5.064 13 C 0.509 3.491 14 O -0.542 6.542 15 N -0.716 5.716 16 C 0.120 3.880 17 C -0.152 4.152 18 C 0.156 3.844 19 N -0.603 5.603 20 C 0.162 3.838 21 C -0.257 4.257 22 H 0.068 0.932 23 C 0.002 3.998 24 N -0.907 5.907 25 Si 0.904 3.096 26 H -0.278 1.278 27 H -0.289 1.289 28 H -0.290 1.290 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.414 0.586 33 H 0.147 0.853 34 H 0.139 0.861 35 H 0.236 0.764 36 H 0.404 0.596 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.060 0.940 41 H 0.038 0.962 42 H 0.049 0.951 43 H 0.031 0.969 44 H 0.040 0.960 45 H -0.003 1.003 46 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.066 -6.788 -26.811 27.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.018 3.982 3 H 0.135 0.865 4 N -0.359 5.359 5 C 0.288 3.712 6 O -0.382 6.382 7 C -0.028 4.028 8 N -0.105 5.105 9 C -0.137 4.137 10 N -0.153 5.153 11 N -0.071 5.071 12 N -0.050 5.050 13 C 0.293 3.707 14 O -0.420 6.420 15 N -0.367 5.367 16 C -0.003 4.003 17 C -0.193 4.193 18 C 0.027 3.973 19 N -0.325 5.325 20 C 0.018 3.982 21 C -0.386 4.386 22 H 0.086 0.914 23 C -0.197 4.197 24 N -0.552 5.552 25 Si 0.734 3.266 26 H -0.203 1.203 27 H -0.216 1.216 28 H -0.217 1.217 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.251 0.749 33 H 0.165 0.835 34 H 0.157 0.843 35 H 0.252 0.748 36 H 0.238 0.762 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.056 0.944 42 H 0.067 0.933 43 H 0.049 0.951 44 H 0.059 0.941 45 H 0.016 0.984 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 0.382 -5.756 -27.312 27.915 hybrid contribution 0.873 0.077 1.257 1.533 sum 1.255 -5.678 -26.055 26.696 Atomic orbital electron populations 1.22154 0.92206 1.03489 1.04147 1.20839 0.96079 0.98154 0.83159 0.86521 1.45536 1.67203 1.15069 1.08058 1.20117 0.79106 0.87721 0.84276 1.90879 1.47997 1.15115 1.84176 1.21954 1.07778 0.90572 0.82507 1.48149 1.08152 1.30165 1.23994 1.27788 0.96693 0.98516 0.90692 1.75019 1.05698 1.13086 1.21491 1.78699 1.03582 1.16478 1.08344 1.79019 1.14103 1.03672 1.08200 1.20422 0.80533 0.84807 0.84899 1.90698 1.38201 1.26427 1.86657 1.46099 1.52884 1.32062 1.05647 1.21538 0.99447 0.96393 0.82965 1.22564 1.01193 1.01098 0.94430 1.20587 0.97453 0.93445 0.85806 1.43891 1.20047 1.40190 1.28375 1.20792 0.84970 0.98824 0.93658 1.19214 1.18567 1.08600 0.92265 0.91392 1.25037 1.00082 0.98721 0.95815 1.70076 1.44853 1.35580 1.04676 0.86200 0.78397 0.83225 0.78798 1.20330 1.21603 1.21690 0.90551 0.91448 0.90417 0.74888 0.83504 0.84337 0.74750 0.76163 0.91469 0.91384 0.91435 0.92099 0.94397 0.93278 0.95062 0.94148 0.98427 0.93766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.02 9.38 37.16 0.35 -0.67 16 2 C 0.13 0.92 2.98 -69.08 -0.21 0.72 16 3 H 0.12 0.93 7.58 -51.93 -0.39 0.54 16 4 N -0.70 -4.04 4.95 -54.93 -0.27 -4.31 16 5 C 0.51 3.28 7.81 -10.98 -0.09 3.19 16 6 O -0.51 -5.78 15.37 5.56 0.09 -5.70 16 7 C 0.10 0.23 6.97 -5.19 -0.04 0.19 16 8 N -0.30 -2.02 3.19 -63.73 -0.20 -2.22 16 9 C 0.16 0.92 12.79 -90.38 -1.16 -0.23 16 10 N -0.31 -3.19 12.36 29.59 0.37 -2.83 16 11 N -0.08 -0.97 13.43 60.35 0.81 -0.16 16 12 N -0.06 -0.71 12.30 60.35 0.74 0.04 16 13 C 0.51 4.94 7.22 -10.98 -0.08 4.86 16 14 O -0.54 -6.76 15.84 5.56 0.09 -6.67 16 15 N -0.72 -6.95 5.45 -60.30 -0.33 -7.28 16 16 C 0.12 1.45 5.67 -4.04 -0.02 1.43 16 17 C -0.15 -2.23 5.65 -26.73 -0.15 -2.38 16 18 C 0.16 2.92 5.64 -4.04 -0.02 2.90 16 19 N -0.60 -14.50 2.92 -181.11 -0.53 -15.03 16 20 C 0.16 3.86 8.98 59.85 0.54 4.39 16 21 C -0.26 -6.84 9.65 -15.06 -0.15 -6.98 16 22 H 0.07 1.76 7.86 -52.49 -0.41 1.35 16 23 C 0.00 0.05 5.10 -17.43 -0.09 -0.04 16 24 N -0.91 -26.05 10.71 55.49 0.59 -25.46 16 25 Si 0.90 21.41 29.57 -169.99 -5.03 16.38 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 28 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.42 7.56 -51.93 -0.39 0.03 16 32 H 0.41 1.72 7.79 -40.82 -0.32 1.40 16 33 H 0.15 -0.31 8.08 -51.93 -0.42 -0.73 16 34 H 0.14 -0.06 8.14 -51.93 -0.42 -0.48 16 35 H 0.24 -0.05 8.06 -52.49 -0.42 -0.47 16 36 H 0.40 3.15 7.89 -40.82 -0.32 2.82 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.04 0.67 8.07 -51.93 -0.42 0.25 16 42 H 0.05 0.93 8.04 -51.92 -0.42 0.52 16 43 H 0.03 0.81 7.34 -51.93 -0.38 0.43 16 44 H 0.04 1.03 7.34 -51.93 -0.38 0.65 16 45 H 0.00 -0.06 8.03 -51.93 -0.42 -0.48 16 46 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 394.22 15.07 5.94 5.94 Total: -1.00 -38.74 394.22 -5.63 -44.38 By element: Atomic # 1 Polarization: 2.33 SS G_CDS: -6.79 Total: -4.46 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: -1.11 Total: 7.38 kcal Atomic # 7 Polarization: -58.43 SS G_CDS: 1.18 Total: -57.25 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.17 Total: -12.37 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -38.74 -5.63 -44.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316858529.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.699 kcal (2) G-P(sol) polarization free energy of solvation -38.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds