Wall clock time and date at job start Tue Mar 31 2020 22:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46768 * 2 1 4 4 N 1.46498 * 109.47360 * 239.99692 * 2 1 3 5 5 C 1.34775 * 119.99702 * 84.72191 * 4 2 1 6 6 O 1.21279 * 120.00444 * 0.27947 * 5 4 2 7 7 C 1.50707 * 119.99723 * 180.27573 * 5 4 2 8 8 N 1.46500 * 109.46742 * 180.02562 * 7 5 4 9 9 C 1.34604 * 126.43261 * 125.00401 * 8 7 5 10 10 N 1.31076 * 106.67318 * 180.02562 * 9 8 7 11 11 N 1.28838 * 107.99018 * 359.97438 * 10 9 8 12 12 N 1.28733 * 109.39940 * 359.73678 * 11 10 9 13 13 C 1.50703 * 109.46951 * 119.99851 * 2 1 3 14 14 O 1.21277 * 120.00163 * 120.00145 * 13 2 1 15 15 N 1.34780 * 119.99828 * 300.00075 * 13 2 1 16 16 C 1.46501 * 119.99903 * 180.02562 * 15 13 2 17 17 C 1.52997 * 109.46965 * 179.97438 * 16 15 13 18 18 C 1.53002 * 109.47154 * 179.97438 * 17 16 15 19 19 N 1.46501 * 109.47339 * 179.97438 * 18 17 16 20 20 C 1.46497 * 119.99421 * 90.00635 * 19 18 17 21 21 C 1.36931 * 120.00389 * 270.00597 * 19 18 17 22 22 H 1.08000 * 120.00367 * 23.04372 * 21 19 18 23 23 C 1.38812 * 119.99986 * 203.04897 * 21 19 18 24 24 N 1.31617 * 120.00020 * 12.93256 * 23 21 19 25 25 Si 1.86802 * 119.99840 * 192.93968 * 23 21 19 26 26 H 1.48502 * 109.47176 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47215 * 119.99396 * 25 23 21 28 28 H 1.48504 * 109.46961 * 239.99355 * 25 23 21 29 29 H 1.09000 * 109.47182 * 60.00346 * 1 2 3 30 30 H 1.09006 * 109.47360 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47689 * 300.00071 * 1 2 3 32 32 H 0.96998 * 119.99888 * 264.99947 * 4 2 1 33 33 H 1.08996 * 109.47012 * 300.00155 * 7 5 4 34 34 H 1.08998 * 109.46999 * 59.99936 * 7 5 4 35 35 H 1.07995 * 126.66224 * 0.02808 * 9 8 7 36 36 H 0.96999 * 120.00219 * 0.02562 * 15 13 2 37 37 H 1.08999 * 109.47199 * 299.99665 * 16 15 13 38 38 H 1.08996 * 109.47321 * 60.00045 * 16 15 13 39 39 H 1.09000 * 109.47577 * 299.99955 * 17 16 15 40 40 H 1.09000 * 109.47339 * 60.00147 * 17 16 15 41 41 H 1.09000 * 109.47328 * 300.00702 * 18 17 16 42 42 H 1.09012 * 109.46828 * 60.00147 * 18 17 16 43 43 H 1.09001 * 109.47642 * 95.12678 * 20 19 18 44 44 H 1.09006 * 109.47146 * 215.11940 * 20 19 18 45 45 H 1.09004 * 109.47460 * 335.11858 * 20 19 18 46 46 H 0.97003 * 120.00148 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1418 -0.0197 -2.3584 6 8 1.8533 1.1570 -2.4130 7 6 2.6383 -0.7317 -3.5904 8 7 2.6830 0.2085 -4.7130 9 6 3.7521 0.4833 -5.4834 10 7 3.3625 1.3729 -6.3638 11 7 2.1191 1.6304 -6.1457 12 7 1.7039 0.9242 -5.1527 13 6 2.0323 -0.7104 1.2305 14 8 2.7295 -1.6964 1.1193 15 7 1.7066 -0.2499 2.4546 16 6 2.1954 -0.9401 3.6508 17 6 1.6857 -0.2185 4.9000 18 6 2.1956 -0.9397 6.1493 19 7 1.7082 -0.2484 7.3454 20 6 0.4281 -0.6348 7.9440 21 6 2.4489 0.7587 7.9039 22 1 3.1681 1.2966 7.3041 23 6 2.2756 1.0883 9.2412 24 7 1.5996 0.2848 10.0347 25 14 3.0017 2.6723 9.9144 26 1 3.7107 3.3933 8.8268 27 1 1.9123 3.5286 10.4482 28 1 3.9599 2.3540 11.0034 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 2.2491 -1.6318 -1.1525 33 1 3.6383 -1.1238 -3.4052 34 1 1.9645 -1.5539 -3.8312 35 1 4.7390 0.0542 -5.3936 36 1 1.1487 0.5386 2.5436 37 1 1.8324 -1.9679 3.6511 38 1 3.2853 -0.9397 3.6507 39 1 2.0490 0.8092 4.8996 40 1 0.5957 -0.2185 4.9004 41 1 1.8321 -1.9673 6.1495 42 1 3.2857 -0.9400 6.1492 43 1 0.6039 -1.3490 8.7484 44 1 -0.0670 0.2496 8.3453 45 1 -0.2052 -1.0921 7.1838 46 1 1.4781 0.5153 10.9691 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316858529.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:34 Heat of formation + Delta-G solvation = 45.688377 kcal Electronic energy + Delta-G solvation = -28177.998495 eV Core-core repulsion = 23947.655409 eV Total energy + Delta-G solvation = -4230.343087 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -45.16404 -41.57106 -40.38522 -37.98679 -36.69006 -36.28657 -36.00187 -33.89139 -33.47527 -32.58062 -31.33627 -29.67887 -27.95012 -27.15342 -25.61553 -24.84220 -24.36519 -23.42027 -22.17663 -21.81144 -21.23732 -19.49082 -18.79041 -18.71427 -17.93439 -17.67774 -17.18332 -16.99048 -16.82693 -16.77442 -16.44190 -16.02711 -15.70427 -15.38573 -15.01606 -14.75925 -14.56471 -14.49809 -14.46618 -13.79735 -13.56686 -13.39685 -13.35356 -13.12954 -12.99934 -12.82290 -12.72132 -12.60461 -12.49389 -12.27504 -12.21625 -12.13645 -12.06223 -11.83196 -11.50378 -11.46423 -11.13308 -11.01913 -10.64120 -10.39361 -10.12818 -8.76629 -7.82226 -5.31404 0.26329 0.93780 1.26108 1.29841 1.45708 1.46780 1.47687 1.57210 1.71139 2.28675 2.51594 3.21073 3.31404 3.47547 3.50054 3.59703 3.67207 3.93879 4.02261 4.03246 4.05394 4.15300 4.28831 4.39854 4.49468 4.58309 4.68616 4.71567 4.73958 4.81667 4.87484 4.95006 5.13652 5.14717 5.20503 5.25829 5.31445 5.38350 5.53575 5.64999 5.73423 6.26928 6.33898 6.42262 6.96012 7.06835 7.16573 7.58400 7.89348 8.32183 9.20850 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.024585 B = 0.001560 C = 0.001519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.641364 B =17947.022835 C =18430.186024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.132 3.868 3 H 0.110 0.890 4 N -0.695 5.695 5 C 0.504 3.496 6 O -0.563 6.563 7 C 0.096 3.904 8 N -0.299 5.299 9 C 0.184 3.816 10 N -0.348 5.348 11 N -0.120 5.120 12 N -0.094 5.094 13 C 0.514 3.486 14 O -0.567 6.567 15 N -0.712 5.712 16 C 0.133 3.867 17 C -0.131 4.131 18 C 0.149 3.851 19 N -0.621 5.621 20 C 0.176 3.824 21 C -0.259 4.259 22 H 0.072 0.928 23 C -0.056 4.056 24 N -0.940 5.940 25 Si 0.965 3.035 26 H -0.265 1.265 27 H -0.293 1.293 28 H -0.294 1.294 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.424 0.576 33 H 0.203 0.797 34 H 0.172 0.828 35 H 0.295 0.705 36 H 0.414 0.586 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.066 0.934 41 H 0.051 0.949 42 H 0.043 0.957 43 H 0.002 0.998 44 H 0.013 0.987 45 H 0.035 0.965 46 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.195 -7.982 -28.220 29.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.023 3.977 3 H 0.128 0.872 4 N -0.350 5.350 5 C 0.289 3.711 6 O -0.441 6.441 7 C -0.027 4.027 8 N -0.102 5.102 9 C -0.113 4.113 10 N -0.196 5.196 11 N -0.114 5.114 12 N -0.082 5.082 13 C 0.300 3.700 14 O -0.447 6.447 15 N -0.363 5.363 16 C 0.009 3.991 17 C -0.171 4.171 18 C 0.023 3.977 19 N -0.344 5.344 20 C 0.031 3.969 21 C -0.389 4.389 22 H 0.090 0.910 23 C -0.251 4.251 24 N -0.588 5.588 25 Si 0.794 3.206 26 H -0.190 1.190 27 H -0.220 1.220 28 H -0.221 1.221 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.105 0.895 32 H 0.263 0.737 33 H 0.220 0.780 34 H 0.190 0.810 35 H 0.310 0.690 36 H 0.251 0.749 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.070 0.930 42 H 0.062 0.938 43 H 0.020 0.980 44 H 0.032 0.968 45 H 0.053 0.947 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 1.514 -6.980 -28.759 29.633 hybrid contribution 0.584 0.323 1.697 1.824 sum 2.097 -6.658 -27.062 27.948 Atomic orbital electron populations 1.22112 0.91294 1.03843 1.04164 1.20710 0.96656 0.97564 0.82733 0.87185 1.45493 1.66633 1.15420 1.07488 1.20804 0.77903 0.87146 0.85250 1.90872 1.50479 1.17656 1.85061 1.22510 1.11659 0.89469 0.79086 1.48418 1.07481 1.29766 1.24501 1.28798 0.97896 0.96197 0.88432 1.74899 1.05360 1.15420 1.23896 1.78656 1.04972 1.18121 1.09677 1.78912 1.16058 1.04742 1.08459 1.20705 0.79790 0.84325 0.85212 1.90688 1.39336 1.27629 1.87032 1.45952 1.52960 1.32311 1.05108 1.21213 0.98905 0.96262 0.82724 1.22180 1.01281 1.00057 0.93605 1.20796 0.97299 0.94253 0.85374 1.44155 1.20113 1.40373 1.29780 1.20536 0.85475 0.97017 0.93905 1.19553 1.18037 1.08955 0.92356 0.91001 1.25785 1.01266 1.01634 0.96371 1.70236 1.46726 1.37203 1.04586 0.85225 0.77405 0.79840 0.78106 1.18966 1.21950 1.22128 0.91523 0.90856 0.89471 0.73661 0.78047 0.81027 0.69044 0.74920 0.91156 0.92097 0.92421 0.91513 0.93041 0.93828 0.97964 0.96842 0.94690 0.94372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 9.38 71.98 0.67 -1.03 16 2 C 0.13 1.71 2.98 44.25 0.13 1.84 16 3 H 0.11 1.64 7.58 -2.39 -0.02 1.62 16 4 N -0.70 -6.31 4.95 -446.09 -2.21 -8.52 16 5 C 0.50 5.45 7.81 87.66 0.68 6.13 16 6 O -0.56 -12.51 15.37 -3.03 -0.05 -12.56 16 7 C 0.10 0.08 6.97 85.64 0.60 0.67 16 8 N -0.30 -3.29 3.19 -355.55 -1.13 -4.43 16 9 C 0.18 1.59 12.79 180.26 2.31 3.90 16 10 N -0.35 -7.07 12.36 -60.29 -0.74 -7.82 16 11 N -0.12 -3.12 13.43 37.01 0.50 -2.62 16 12 N -0.09 -2.08 12.30 37.02 0.46 -1.63 16 13 C 0.51 8.86 7.22 87.66 0.63 9.50 16 14 O -0.57 -12.82 15.84 -3.02 -0.05 -12.87 16 15 N -0.71 -12.22 5.45 -463.06 -2.52 -14.74 16 16 C 0.13 2.92 5.67 86.38 0.49 3.41 16 17 C -0.13 -3.58 5.65 30.59 0.17 -3.41 16 18 C 0.15 5.39 5.64 86.38 0.49 5.87 16 19 N -0.62 -29.54 2.92 -726.91 -2.12 -31.66 16 20 C 0.18 8.33 8.98 127.77 1.15 9.48 16 21 C -0.26 -13.69 9.65 84.03 0.81 -12.88 16 22 H 0.07 3.67 7.86 -2.91 -0.02 3.65 16 23 C -0.06 -3.07 5.10 84.86 0.43 -2.63 16 24 N -0.94 -55.03 10.71 21.65 0.23 -54.80 16 25 Si 0.97 44.23 29.57 68.60 2.03 46.25 16 26 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 27 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 28 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 29 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 31 H 0.09 0.77 7.56 -2.39 -0.02 0.75 16 32 H 0.42 2.19 7.79 -92.71 -0.72 1.47 16 33 H 0.20 -2.07 8.08 -2.39 -0.02 -2.09 16 34 H 0.17 -0.92 8.14 -2.39 -0.02 -0.94 16 35 H 0.29 -1.66 8.06 -2.91 -0.02 -1.69 16 36 H 0.41 5.50 7.89 -92.71 -0.73 4.77 16 37 H 0.07 1.54 8.14 -2.39 -0.02 1.53 16 38 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.07 1.77 8.14 -2.39 -0.02 1.76 16 41 H 0.05 1.72 8.07 -2.39 -0.02 1.70 16 42 H 0.04 1.61 8.04 -2.38 -0.02 1.59 16 43 H 0.00 0.11 7.34 -2.39 -0.02 0.09 16 44 H 0.01 0.67 7.34 -2.38 -0.02 0.65 16 45 H 0.03 1.36 8.03 -2.38 -0.02 1.34 16 46 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 Total: -1.00 -89.16 394.22 2.52 -86.64 By element: Atomic # 1 Polarization: -1.69 SS G_CDS: -0.43 Total: -2.12 kcal Atomic # 6 Polarization: 12.30 SS G_CDS: 8.57 Total: 20.87 kcal Atomic # 7 Polarization: -118.67 SS G_CDS: -7.55 Total: -126.22 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: -0.09 Total: -25.43 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Total: -89.16 2.52 -86.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316858529.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.333 kcal (2) G-P(sol) polarization free energy of solvation -89.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds