Wall clock time and date at job start Tue Mar 31 2020 22:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.47062 * 2 1 4 4 C 1.36941 * 119.99810 * 275.31085 * 3 2 1 5 5 H 1.08004 * 119.99649 * 37.57145 * 4 3 2 6 6 C 1.38810 * 120.00336 * 217.57889 * 4 3 2 7 7 N 1.31626 * 119.99803 * 21.42681 * 6 4 3 8 8 Si 1.86794 * 120.00219 * 201.43418 * 6 4 3 9 9 H 1.48500 * 109.47281 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47511 * 119.99596 * 8 6 4 11 11 H 1.48508 * 109.46825 * 239.99586 * 8 6 4 12 12 C 1.46494 * 120.00422 * 95.30964 * 3 2 1 13 13 C 1.52999 * 109.47048 * 270.00094 * 12 3 2 14 14 C 1.53009 * 109.47114 * 179.97438 * 13 12 3 15 15 N 1.46501 * 109.46989 * 180.02562 * 14 13 12 16 16 C 1.34776 * 119.99330 * 180.27800 * 15 14 13 17 17 O 1.21632 * 120.00554 * 359.72077 * 16 15 14 18 18 C 1.47273 * 119.99550 * 179.72192 * 16 15 14 19 19 C 1.35202 * 123.13978 * 179.70544 * 18 16 15 20 20 S 1.70942 * 108.82520 * 179.90589 * 19 18 16 21 21 C 1.70767 * 91.12987 * 0.30349 * 20 19 18 22 22 C 1.50705 * 124.71980 * 179.82208 * 21 20 19 23 23 C 1.52993 * 109.47027 * 269.99880 * 22 21 20 24 24 C 1.53000 * 109.47407 * 65.00155 * 23 22 21 25 25 C 1.52999 * 109.46969 * 185.00232 * 23 22 21 26 26 N 1.28645 * 110.55678 * 359.82029 * 21 20 19 27 27 H 1.09005 * 109.46877 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46781 * 299.99763 * 1 2 3 29 29 H 1.08992 * 109.47086 * 60.00411 * 1 2 3 30 30 H 1.08998 * 109.47228 * 239.99608 * 2 1 3 31 31 H 1.09005 * 109.47285 * 119.99761 * 2 1 3 32 32 H 0.96991 * 119.99936 * 180.02562 * 7 6 4 33 33 H 1.09004 * 109.47549 * 150.00013 * 12 3 2 34 34 H 1.09007 * 109.47059 * 29.99918 * 12 3 2 35 35 H 1.09001 * 109.47294 * 60.00296 * 13 12 3 36 36 H 1.08992 * 109.47402 * 299.99547 * 13 12 3 37 37 H 1.09001 * 109.46608 * 60.00109 * 14 13 12 38 38 H 1.08997 * 109.47092 * 300.00510 * 14 13 12 39 39 H 0.96996 * 119.99758 * 359.97438 * 15 14 13 40 40 H 1.08000 * 125.58691 * 0.02562 * 19 18 16 41 41 H 1.08998 * 109.46702 * 30.00258 * 22 21 20 42 42 H 1.09001 * 109.46714 * 149.99382 * 22 21 20 43 43 H 1.09002 * 109.46936 * 304.99952 * 23 22 21 44 44 H 1.08999 * 109.47490 * 179.97438 * 24 23 22 45 45 H 1.08997 * 109.46564 * 300.00033 * 24 23 22 46 46 H 1.09003 * 109.46614 * 59.99554 * 24 23 22 47 47 H 1.09001 * 109.47170 * 59.99531 * 25 23 22 48 48 H 1.09003 * 109.47478 * 180.02562 * 25 23 22 49 49 H 1.09002 * 109.47063 * 299.99642 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1431 2.0633 -1.1809 5 1 1.4105 1.9277 -1.9628 6 6 3.2111 2.9289 -1.3730 7 7 4.3027 2.7981 -0.6493 8 14 3.0991 4.2796 -2.6585 9 1 1.7773 4.2135 -3.3321 10 1 3.2548 5.6023 -2.0017 11 1 4.1765 4.0963 -3.6641 12 6 2.3732 2.0328 1.2632 13 6 1.1426 2.7383 1.8364 14 6 1.5130 3.4183 3.1561 15 7 0.3345 4.0934 3.7053 16 6 0.4256 4.7686 4.8681 17 8 1.4849 4.8132 5.4642 18 6 -0.7576 5.4524 5.4171 19 6 -0.7394 6.1422 6.5798 20 16 -2.2980 6.7840 6.8647 21 6 -2.8858 6.0873 5.4207 22 6 -4.3034 6.2091 4.9240 23 6 -5.1390 5.0535 5.4781 24 6 -5.2317 5.1753 7.0004 25 6 -6.5445 5.1058 4.8757 26 7 -1.9501 5.4442 4.8159 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 5.0488 3.4031 -0.7832 33 1 3.1617 2.7642 1.0859 34 1 2.7255 1.2834 1.9721 35 1 0.3541 2.0069 2.0139 36 1 0.7903 3.4876 1.1276 37 1 2.3016 4.1497 2.9790 38 1 1.8652 2.6687 3.8647 39 1 -0.5102 4.0580 3.2297 40 1 0.1195 6.2687 7.2222 41 1 -4.7257 7.1564 5.2593 42 1 -4.3109 6.1734 3.8346 43 1 -4.6670 4.1062 5.2174 44 1 -5.8274 4.3522 7.3952 45 1 -4.2304 5.1380 7.4294 46 1 -5.7037 6.1226 7.2610 47 1 -6.4784 5.0191 3.7912 48 1 -7.1400 4.2827 5.2708 49 1 -7.0165 6.0531 5.1364 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316910603.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:32 Heat of formation + Delta-G solvation = -1.530253 kcal Electronic energy + Delta-G solvation = -26783.856838 eV Core-core repulsion = 23065.466661 eV Total energy + Delta-G solvation = -3718.390177 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.60562 -38.79981 -36.77147 -36.38118 -34.75794 -31.83329 -31.56517 -31.05771 -28.55685 -28.06461 -27.60521 -26.13203 -24.53112 -23.34562 -21.91204 -20.97915 -20.46904 -20.09062 -19.76355 -18.64431 -16.79946 -16.52099 -15.89044 -15.73332 -15.40211 -15.24406 -14.98798 -14.78277 -14.18460 -13.99786 -13.81951 -13.60267 -13.42154 -13.14350 -13.01903 -12.63298 -12.55574 -12.34986 -12.27762 -12.18241 -11.57896 -11.56394 -11.40147 -11.34046 -11.12101 -11.11077 -10.99952 -10.74237 -10.55632 -10.41934 -10.15239 -10.06262 -9.90853 -9.85663 -9.61703 -9.49806 -9.15324 -8.75023 -8.44690 -6.53528 -5.75660 -3.34802 0.28795 0.95157 1.34771 1.83619 3.33258 3.37267 3.37981 3.45711 3.47928 3.73687 4.39001 4.43112 4.49879 4.51665 4.81831 4.98991 5.04906 5.09603 5.20552 5.22680 5.28798 5.37846 5.43019 5.44123 5.53332 5.63134 5.69920 5.76332 5.85052 5.88672 5.92710 6.02416 6.12489 6.31995 6.39028 6.46615 6.51013 6.62208 6.78913 6.80881 6.94584 7.13020 7.18956 7.21487 7.71021 7.73313 7.85590 8.30754 8.55551 9.22756 9.85185 10.44085 11.23733 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012025 B = 0.002422 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.919748 B =11560.264101 C =12231.402596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.140 3.860 3 N -0.585 5.585 4 C -0.258 4.258 5 H 0.059 0.941 6 C 0.012 3.988 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.290 1.290 12 C 0.151 3.849 13 C -0.146 4.146 14 C 0.119 3.881 15 N -0.704 5.704 16 C 0.586 3.414 17 O -0.540 6.540 18 C 0.016 3.984 19 C -0.230 4.230 20 S 0.201 5.799 21 C 0.032 3.968 22 C -0.040 4.040 23 C -0.092 4.092 24 C -0.157 4.157 25 C -0.146 4.146 26 N -0.440 5.440 27 H 0.034 0.966 28 H 0.043 0.957 29 H 0.048 0.952 30 H 0.043 0.957 31 H 0.033 0.967 32 H 0.254 0.746 33 H 0.095 0.905 34 H 0.025 0.975 35 H 0.052 0.948 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.408 0.592 40 H 0.189 0.811 41 H 0.087 0.913 42 H 0.098 0.902 43 H 0.079 0.921 44 H 0.060 0.940 45 H 0.055 0.945 46 H 0.058 0.942 47 H 0.059 0.941 48 H 0.059 0.941 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.327 7.541 16.868 27.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.014 3.986 3 N -0.305 5.305 4 C -0.388 4.388 5 H 0.077 0.923 6 C -0.188 4.188 7 N -0.529 5.529 8 Si 0.723 3.277 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.217 1.217 12 C 0.024 3.976 13 C -0.187 4.187 14 C -0.004 4.004 15 N -0.354 5.354 16 C 0.369 3.631 17 O -0.417 6.417 18 C -0.119 4.119 19 C -0.372 4.372 20 S 0.458 5.542 21 C -0.248 4.248 22 C -0.080 4.080 23 C -0.112 4.112 24 C -0.214 4.214 25 C -0.203 4.203 26 N -0.155 5.155 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.113 0.887 34 H 0.044 0.956 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.243 0.757 40 H 0.206 0.794 41 H 0.105 0.895 42 H 0.116 0.884 43 H 0.097 0.903 44 H 0.079 0.921 45 H 0.074 0.926 46 H 0.077 0.923 47 H 0.078 0.922 48 H 0.078 0.922 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.893 7.946 17.504 27.664 hybrid contribution 0.441 0.328 -1.202 1.321 sum -19.452 8.274 16.303 26.695 Atomic orbital electron populations 1.22370 1.00171 0.98860 1.01147 1.20846 0.91670 0.87389 0.98696 1.43750 1.76039 1.08205 1.02503 1.19013 1.04576 1.21104 0.94109 0.92317 1.25188 0.94239 1.01333 0.98079 1.70009 1.03215 1.37242 1.42400 0.86373 0.77650 0.82365 0.81276 1.20094 1.21434 1.21651 1.20795 0.94404 0.96641 0.85756 1.22539 1.02387 0.99928 0.93796 1.21564 0.86875 0.96184 0.95781 1.46020 1.15056 1.51861 1.22471 1.17100 0.85878 0.78740 0.81382 1.90813 1.28457 1.62172 1.60289 1.20535 0.93095 1.03807 0.94441 1.26607 1.04145 1.04245 1.02190 1.82800 0.99807 1.48280 1.23296 1.27094 1.00630 1.00297 0.96757 1.20421 0.85307 0.99866 1.02453 1.21116 0.95895 0.98489 0.95736 1.22017 1.02071 1.02235 0.95126 1.21819 0.95360 1.02069 1.01091 1.66915 0.98855 1.18147 1.31624 0.94659 0.93783 0.93265 0.93898 0.94849 0.93584 0.88728 0.95647 0.92983 0.91649 0.91276 0.91760 0.75681 0.79401 0.89461 0.88361 0.90291 0.92097 0.92599 0.92291 0.92186 0.92238 0.92472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.04 10.21 37.16 0.38 -2.66 16 2 C 0.14 2.99 6.44 -4.04 -0.03 2.97 16 3 N -0.58 -14.46 2.43 -173.23 -0.42 -14.88 16 4 C -0.26 -7.02 9.45 -15.06 -0.14 -7.16 16 5 H 0.06 1.61 7.92 -52.48 -0.42 1.19 16 6 C 0.01 0.33 4.95 -17.43 -0.09 0.24 16 7 N -0.89 -25.58 11.47 55.49 0.64 -24.94 16 8 Si 0.89 21.64 29.60 -169.99 -5.03 16.60 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 C 0.15 3.49 5.33 -4.05 -0.02 3.47 16 13 C -0.15 -2.82 5.65 -26.73 -0.15 -2.97 16 14 C 0.12 2.13 5.67 -4.04 -0.02 2.11 16 15 N -0.70 -11.44 5.55 -61.42 -0.34 -11.78 16 16 C 0.59 9.83 7.80 -12.59 -0.10 9.74 16 17 O -0.54 -10.52 16.71 5.25 0.09 -10.43 16 18 C 0.02 0.22 6.70 -84.53 -0.57 -0.34 16 19 C -0.23 -2.59 10.62 29.65 0.31 -2.28 16 20 S 0.20 1.59 21.37 -107.50 -2.30 -0.71 16 21 C 0.03 0.30 5.97 -13.61 -0.08 0.22 16 22 C -0.04 -0.27 5.26 -27.88 -0.15 -0.41 16 23 C -0.09 -0.58 2.91 -90.62 -0.26 -0.84 16 24 C -0.16 -0.88 8.89 37.16 0.33 -0.55 16 25 C -0.15 -0.74 9.19 37.16 0.34 -0.40 16 26 N -0.44 -5.53 10.12 -8.51 -0.09 -5.62 16 27 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.04 0.79 6.64 -51.93 -0.34 0.44 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.04 0.94 8.08 -51.93 -0.42 0.52 16 31 H 0.03 0.67 7.83 -51.93 -0.41 0.26 16 32 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 33 H 0.10 2.49 5.52 -51.93 -0.29 2.21 16 34 H 0.03 0.56 7.86 -51.92 -0.41 0.15 16 35 H 0.05 0.95 6.64 -51.93 -0.34 0.61 16 36 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 37 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.41 6.10 7.99 -40.82 -0.33 5.77 16 40 H 0.19 1.95 8.03 -52.49 -0.42 1.53 16 41 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.06 0.36 6.13 -51.93 -0.32 0.04 16 46 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 47 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 48 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 49 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 LS Contribution 410.43 15.07 6.19 6.19 Total: -1.00 -31.58 410.43 -9.83 -41.41 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -8.32 Total: 3.04 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: -0.24 Total: 1.13 kcal Atomic # 7 Polarization: -57.02 SS G_CDS: -0.21 Total: -57.23 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.09 Total: -10.43 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.60 kcal Atomic # 16 Polarization: 1.59 SS G_CDS: -2.30 Total: -0.71 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -31.58 -9.83 -41.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316910603.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.882 kcal (2) G-P(sol) polarization free energy of solvation -31.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds