Wall clock time and date at job start Tue Mar 31 2020 22:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.47062 * 2 1 4 4 C 1.36941 * 119.99810 * 275.31085 * 3 2 1 5 5 H 1.08004 * 119.99649 * 37.57145 * 4 3 2 6 6 C 1.38810 * 120.00336 * 217.57889 * 4 3 2 7 7 N 1.31626 * 119.99803 * 21.42681 * 6 4 3 8 8 Si 1.86794 * 120.00219 * 201.43418 * 6 4 3 9 9 H 1.48500 * 109.47281 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47511 * 119.99596 * 8 6 4 11 11 H 1.48508 * 109.46825 * 239.99586 * 8 6 4 12 12 C 1.46494 * 120.00422 * 95.30964 * 3 2 1 13 13 C 1.52999 * 109.47048 * 270.00094 * 12 3 2 14 14 C 1.53009 * 109.47114 * 179.97438 * 13 12 3 15 15 N 1.46501 * 109.46989 * 180.02562 * 14 13 12 16 16 C 1.34776 * 119.99330 * 180.27800 * 15 14 13 17 17 O 1.21632 * 120.00554 * 359.72077 * 16 15 14 18 18 C 1.47273 * 119.99550 * 179.72192 * 16 15 14 19 19 C 1.35202 * 123.13978 * 179.70544 * 18 16 15 20 20 S 1.70942 * 108.82520 * 179.90589 * 19 18 16 21 21 C 1.70767 * 91.12987 * 0.30349 * 20 19 18 22 22 C 1.50705 * 124.71980 * 179.82208 * 21 20 19 23 23 C 1.52993 * 109.47027 * 269.99880 * 22 21 20 24 24 C 1.53000 * 109.47407 * 65.00155 * 23 22 21 25 25 C 1.52999 * 109.46969 * 185.00232 * 23 22 21 26 26 N 1.28645 * 110.55678 * 359.82029 * 21 20 19 27 27 H 1.09005 * 109.46877 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46781 * 299.99763 * 1 2 3 29 29 H 1.08992 * 109.47086 * 60.00411 * 1 2 3 30 30 H 1.08998 * 109.47228 * 239.99608 * 2 1 3 31 31 H 1.09005 * 109.47285 * 119.99761 * 2 1 3 32 32 H 0.96991 * 119.99936 * 180.02562 * 7 6 4 33 33 H 1.09004 * 109.47549 * 150.00013 * 12 3 2 34 34 H 1.09007 * 109.47059 * 29.99918 * 12 3 2 35 35 H 1.09001 * 109.47294 * 60.00296 * 13 12 3 36 36 H 1.08992 * 109.47402 * 299.99547 * 13 12 3 37 37 H 1.09001 * 109.46608 * 60.00109 * 14 13 12 38 38 H 1.08997 * 109.47092 * 300.00510 * 14 13 12 39 39 H 0.96996 * 119.99758 * 359.97438 * 15 14 13 40 40 H 1.08000 * 125.58691 * 0.02562 * 19 18 16 41 41 H 1.08998 * 109.46702 * 30.00258 * 22 21 20 42 42 H 1.09001 * 109.46714 * 149.99382 * 22 21 20 43 43 H 1.09002 * 109.46936 * 304.99952 * 23 22 21 44 44 H 1.08999 * 109.47490 * 179.97438 * 24 23 22 45 45 H 1.08997 * 109.46564 * 300.00033 * 24 23 22 46 46 H 1.09003 * 109.46614 * 59.99554 * 24 23 22 47 47 H 1.09001 * 109.47170 * 59.99531 * 25 23 22 48 48 H 1.09003 * 109.47478 * 180.02562 * 25 23 22 49 49 H 1.09002 * 109.47063 * 299.99642 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1431 2.0633 -1.1809 5 1 1.4105 1.9277 -1.9628 6 6 3.2111 2.9289 -1.3730 7 7 4.3027 2.7981 -0.6493 8 14 3.0991 4.2796 -2.6585 9 1 1.7773 4.2135 -3.3321 10 1 3.2548 5.6023 -2.0017 11 1 4.1765 4.0963 -3.6641 12 6 2.3732 2.0328 1.2632 13 6 1.1426 2.7383 1.8364 14 6 1.5130 3.4183 3.1561 15 7 0.3345 4.0934 3.7053 16 6 0.4256 4.7686 4.8681 17 8 1.4849 4.8132 5.4642 18 6 -0.7576 5.4524 5.4171 19 6 -0.7394 6.1422 6.5798 20 16 -2.2980 6.7840 6.8647 21 6 -2.8858 6.0873 5.4207 22 6 -4.3034 6.2091 4.9240 23 6 -5.1390 5.0535 5.4781 24 6 -5.2317 5.1753 7.0004 25 6 -6.5445 5.1058 4.8757 26 7 -1.9501 5.4442 4.8159 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 5.0488 3.4031 -0.7832 33 1 3.1617 2.7642 1.0859 34 1 2.7255 1.2834 1.9721 35 1 0.3541 2.0069 2.0139 36 1 0.7903 3.4876 1.1276 37 1 2.3016 4.1497 2.9790 38 1 1.8652 2.6687 3.8647 39 1 -0.5102 4.0580 3.2297 40 1 0.1195 6.2687 7.2222 41 1 -4.7257 7.1564 5.2593 42 1 -4.3109 6.1734 3.8346 43 1 -4.6670 4.1062 5.2174 44 1 -5.8274 4.3522 7.3952 45 1 -4.2304 5.1380 7.4294 46 1 -5.7037 6.1226 7.2610 47 1 -6.4784 5.0191 3.7912 48 1 -7.1400 4.2827 5.2708 49 1 -7.0165 6.0531 5.1364 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316910603.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:31 Heat of formation + Delta-G solvation = -20.381306 kcal Electronic energy + Delta-G solvation = -26784.674281 eV Core-core repulsion = 23065.466661 eV Total energy + Delta-G solvation = -3719.207620 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.61862 -39.94421 -38.21012 -37.28510 -36.27917 -33.82532 -32.88101 -32.09639 -30.29112 -28.74638 -28.00575 -27.62947 -26.10694 -24.77898 -22.87309 -22.53858 -22.01639 -21.15504 -20.56686 -19.69648 -18.63901 -17.66526 -17.15466 -16.93425 -16.76783 -16.19425 -16.10240 -15.92132 -15.62297 -15.50323 -15.00366 -14.85903 -14.48461 -14.31012 -14.13058 -14.07784 -13.52639 -13.26837 -13.21125 -13.06812 -12.99834 -12.79857 -12.75579 -12.69418 -12.60113 -12.34015 -12.15673 -12.08495 -11.94639 -11.81695 -11.57367 -11.50051 -11.34873 -11.24821 -10.85524 -10.62227 -10.51131 -10.28592 -9.81126 -8.55926 -7.81798 -5.45874 -0.55556 0.21671 0.54751 0.84321 1.42820 1.46664 1.56196 2.12046 2.21782 2.50168 2.89258 3.23609 3.64431 3.65965 3.95503 3.99222 4.05945 4.11067 4.15900 4.27053 4.37114 4.42984 4.51370 4.54169 4.70460 4.72867 4.75195 4.81109 4.87159 4.88180 4.94724 4.95934 5.01259 5.04524 5.10337 5.13943 5.31197 5.32439 5.33112 5.42536 5.44470 5.48924 5.59474 5.68969 5.82104 6.23666 6.47737 6.56026 7.02522 7.18028 7.87689 8.40410 9.13210 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012025 B = 0.002422 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.919748 B =11560.264101 C =12231.402596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.134 3.866 3 N -0.602 5.602 4 C -0.262 4.262 5 H 0.055 0.945 6 C -0.037 4.037 7 N -0.918 5.918 8 Si 0.953 3.047 9 H -0.266 1.266 10 H -0.291 1.291 11 H -0.290 1.290 12 C 0.152 3.848 13 C -0.122 4.122 14 C 0.132 3.868 15 N -0.700 5.700 16 C 0.583 3.417 17 O -0.576 6.576 18 C -0.013 4.013 19 C -0.243 4.243 20 S 0.297 5.703 21 C 0.021 3.979 22 C -0.040 4.040 23 C -0.090 4.090 24 C -0.157 4.157 25 C -0.143 4.143 26 N -0.467 5.467 27 H 0.066 0.934 28 H 0.048 0.952 29 H 0.036 0.964 30 H 0.031 0.969 31 H 0.045 0.955 32 H 0.251 0.749 33 H 0.061 0.939 34 H 0.030 0.970 35 H 0.068 0.932 36 H 0.050 0.950 37 H 0.049 0.951 38 H 0.066 0.934 39 H 0.415 0.585 40 H 0.192 0.808 41 H 0.115 0.885 42 H 0.094 0.906 43 H 0.056 0.944 44 H 0.062 0.938 45 H 0.046 0.954 46 H 0.076 0.924 47 H 0.055 0.945 48 H 0.060 0.940 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.417 8.549 18.019 30.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.009 3.991 3 N -0.323 5.323 4 C -0.392 4.392 5 H 0.073 0.927 6 C -0.234 4.234 7 N -0.562 5.562 8 Si 0.782 3.218 9 H -0.190 1.190 10 H -0.218 1.218 11 H -0.217 1.217 12 C 0.025 3.975 13 C -0.162 4.162 14 C 0.008 3.992 15 N -0.350 5.350 16 C 0.368 3.632 17 O -0.457 6.457 18 C -0.148 4.148 19 C -0.386 4.386 20 S 0.556 5.444 21 C -0.258 4.258 22 C -0.081 4.081 23 C -0.110 4.110 24 C -0.215 4.215 25 C -0.201 4.201 26 N -0.183 5.183 27 H 0.085 0.915 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.049 0.951 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.079 0.921 34 H 0.048 0.952 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.252 0.748 40 H 0.209 0.791 41 H 0.133 0.867 42 H 0.112 0.888 43 H 0.075 0.925 44 H 0.081 0.919 45 H 0.065 0.935 46 H 0.095 0.905 47 H 0.074 0.926 48 H 0.079 0.921 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -23.044 8.945 18.655 30.968 hybrid contribution 1.319 -0.005 -1.460 1.968 sum -21.725 8.940 17.195 29.113 Atomic orbital electron populations 1.22173 0.97377 1.00787 1.00724 1.21000 0.93746 0.85652 0.98713 1.43994 1.76435 1.09619 1.02258 1.19203 1.04044 1.21229 0.94768 0.92743 1.25855 0.94040 1.03336 1.00193 1.70134 1.03814 1.38056 1.44189 0.85437 0.77808 0.79528 0.79068 1.19043 1.21818 1.21718 1.20684 0.95026 0.96151 0.85624 1.22175 1.00857 0.99459 0.93730 1.21256 0.87092 0.95698 0.95186 1.45878 1.14663 1.51797 1.22651 1.17547 0.86550 0.78196 0.80869 1.90777 1.30131 1.63542 1.61207 1.20154 0.92868 1.05881 0.95899 1.26902 1.06631 1.03636 1.01384 1.82438 0.95994 1.45336 1.20618 1.27626 1.01188 0.99432 0.97572 1.20598 0.83793 1.01336 1.02375 1.21074 0.96295 0.97224 0.96419 1.22031 1.01730 1.03389 0.94332 1.21797 0.94571 1.02945 1.00746 1.66882 0.98880 1.19749 1.32810 0.91539 0.93303 0.94502 0.95079 0.93657 0.93997 0.92107 0.95158 0.91377 0.93167 0.93258 0.91566 0.74847 0.79086 0.86671 0.88764 0.92541 0.91874 0.93521 0.90484 0.92604 0.92111 0.91004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.25 10.21 71.98 0.73 -4.52 16 2 C 0.13 5.64 6.44 86.38 0.56 6.19 16 3 N -0.60 -30.00 2.43 -701.99 -1.71 -31.71 16 4 C -0.26 -14.39 9.45 84.03 0.79 -13.60 16 5 H 0.05 2.99 7.92 -2.91 -0.02 2.97 16 6 C -0.04 -2.07 4.95 84.86 0.42 -1.65 16 7 N -0.92 -54.45 11.47 21.65 0.25 -54.21 16 8 Si 0.95 45.20 29.60 68.60 2.03 47.23 16 9 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 10 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 11 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 12 C 0.15 7.17 5.33 86.38 0.46 7.63 16 13 C -0.12 -4.76 5.65 30.60 0.17 -4.58 16 14 C 0.13 4.84 5.67 86.38 0.49 5.33 16 15 N -0.70 -23.19 5.55 -466.49 -2.59 -25.78 16 16 C 0.58 20.05 7.80 86.62 0.68 20.73 16 17 O -0.58 -23.22 16.71 -4.13 -0.07 -23.28 16 18 C -0.01 -0.36 6.70 40.56 0.27 -0.09 16 19 C -0.24 -5.23 10.62 67.12 0.71 -4.51 16 20 S 0.30 3.87 21.37 -56.49 -1.21 2.67 16 21 C 0.02 0.36 5.97 88.58 0.53 0.89 16 22 C -0.04 -0.45 5.26 29.85 0.16 -0.29 16 23 C -0.09 -0.95 2.91 -10.80 -0.03 -0.98 16 24 C -0.16 -1.34 8.89 71.98 0.64 -0.70 16 25 C -0.14 -1.13 9.19 71.98 0.66 -0.47 16 26 N -0.47 -11.44 10.12 -180.83 -1.83 -13.27 16 27 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 28 H 0.05 1.64 6.64 -2.39 -0.02 1.62 16 29 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.03 1.35 8.08 -2.39 -0.02 1.33 16 31 H 0.05 1.77 7.83 -2.38 -0.02 1.75 16 32 H 0.25 14.41 8.31 -92.72 -0.77 13.64 16 33 H 0.06 3.34 5.52 -2.38 -0.01 3.32 16 34 H 0.03 1.36 7.86 -2.38 -0.02 1.34 16 35 H 0.07 2.44 6.64 -2.39 -0.02 2.42 16 36 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 39 H 0.41 12.51 7.99 -92.71 -0.74 11.77 16 40 H 0.19 3.86 8.03 -2.91 -0.02 3.83 16 41 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.06 0.85 8.14 -2.39 -0.02 0.84 16 44 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 45 H 0.05 0.47 6.13 -2.39 -0.01 0.46 16 46 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 47 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 48 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 49 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 Total: -1.00 -69.95 410.43 2.31 -67.63 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: 0.19 Total: 21.35 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: 7.24 Total: 9.37 kcal Atomic # 7 Polarization: -119.08 SS G_CDS: -5.88 Total: -124.96 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: -0.07 Total: -23.28 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Atomic # 16 Polarization: 3.87 SS G_CDS: -1.21 Total: 2.67 kcal Total: -69.95 2.31 -67.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316910603.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.253 kcal (2) G-P(sol) polarization free energy of solvation -69.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds