Wall clock time and date at job start Tue Mar 31 2020 23:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47168 * 10.26207 * 3 2 1 5 5 N 1.46896 * 109.47114 * 179.97438 * 4 3 2 6 6 C 1.46956 * 111.00264 * 293.80085 * 5 4 3 7 7 C 1.53048 * 109.36563 * 176.81245 * 6 5 4 8 8 N 1.46963 * 109.36781 * 58.39854 * 7 6 5 9 9 C 1.46896 * 110.99868 * 176.81328 * 8 7 6 10 10 C 1.53005 * 109.46888 * 293.79536 * 9 8 7 11 11 N 1.46506 * 109.46712 * 180.02562 * 10 9 8 12 12 C 1.46502 * 120.00214 * 270.00066 * 11 10 9 13 13 C 1.34775 * 119.99574 * 90.00672 * 11 10 9 14 14 O 1.21280 * 120.00473 * 359.97438 * 13 11 10 15 15 C 1.50706 * 119.99862 * 180.02562 * 13 11 10 16 16 S 1.80996 * 109.47315 * 179.97438 * 15 13 11 17 17 C 1.76201 * 100.00110 * 179.97438 * 16 15 13 18 18 H 1.07999 * 119.99729 * 0.02562 * 17 16 15 19 19 C 1.38793 * 119.99979 * 180.02562 * 17 16 15 20 20 N 1.31632 * 120.00017 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00108 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46842 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47342 * 119.99761 * 21 19 17 24 24 H 1.48501 * 109.47253 * 239.99755 * 21 19 17 25 25 C 1.46957 * 110.87713 * 300.68055 * 8 7 6 26 26 C 1.46963 * 111.00169 * 169.99835 * 5 4 3 27 27 H 4.44645 * 5.63342 * 179.97438 * 4 1 2 28 28 H 1.09001 * 109.47046 * 130.25833 * 3 2 1 29 29 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 30 30 H 1.09001 * 109.47289 * 300.00032 * 4 3 2 31 31 H 1.09004 * 109.47261 * 59.99776 * 4 3 2 32 32 H 1.09006 * 109.48298 * 296.77713 * 6 5 4 33 33 H 1.09000 * 109.49028 * 56.84339 * 6 5 4 34 34 H 1.08998 * 109.49036 * 298.43023 * 7 6 5 35 35 H 1.09001 * 109.49100 * 178.36836 * 7 6 5 36 36 H 1.08997 * 109.47364 * 53.79771 * 9 8 7 37 37 H 1.09005 * 109.46879 * 173.79995 * 9 8 7 38 38 H 1.08997 * 109.47309 * 300.00268 * 10 9 8 39 39 H 1.08995 * 109.46860 * 60.01065 * 10 9 8 40 40 H 1.09003 * 109.46492 * 90.00076 * 12 11 10 41 41 H 1.08998 * 109.47261 * 209.99988 * 12 11 10 42 42 H 1.08997 * 109.47002 * 330.00674 * 12 11 10 43 43 H 1.09001 * 109.46873 * 299.99831 * 15 13 11 44 44 H 1.09004 * 109.47209 * 59.99414 * 15 13 11 45 45 H 0.97003 * 119.99733 * 179.97438 * 20 19 17 46 46 H 1.08997 * 109.48761 * 299.34899 * 25 8 7 47 47 H 1.09000 * 109.48710 * 179.28489 * 25 8 7 48 48 H 1.09002 * 109.48412 * 303.15760 * 26 5 4 49 49 H 1.08998 * 109.48746 * 63.21928 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.4185 -0.2570 5 7 4.6256 -1.4177 -0.2576 6 6 5.1514 -0.6492 -1.3945 7 6 6.6792 -0.6059 -1.3146 8 7 7.2066 -1.9776 -1.3208 9 6 8.6756 -1.9768 -1.3214 10 6 9.1847 -1.3886 -2.6389 11 7 10.6498 -1.3883 -2.6397 12 6 11.3824 -0.2297 -2.1228 13 6 11.3235 -2.4540 -3.1159 14 8 10.7171 -3.4133 -3.5435 15 6 12.8306 -2.4540 -3.1162 16 16 13.4338 -4.0123 -3.8118 17 6 15.1718 -3.7472 -3.6946 18 1 15.5506 -2.8237 -3.2824 19 6 16.0540 -4.7253 -4.1321 20 7 15.5923 -5.8512 -4.6341 21 14 17.8966 -4.4446 -4.0073 22 1 18.1545 -3.1093 -3.4111 23 1 18.5004 -5.4954 -3.1490 24 1 18.4996 -4.5059 -5.3629 25 6 6.6808 -2.7461 -0.1839 26 6 5.1530 -2.7894 -0.2638 27 1 -1.0498 -0.0004 0.0001 28 1 3.0090 0.6649 -0.7843 29 1 3.0092 0.3479 0.9672 30 1 2.7936 -2.0829 0.5272 31 1 2.7934 -1.7658 -1.2243 32 1 4.8494 -1.1265 -2.3268 33 1 4.7566 0.3662 -1.3607 34 1 6.9812 -0.1044 -0.3952 35 1 7.0729 -0.0610 -2.1726 36 1 9.0389 -1.3733 -0.4896 37 1 9.0395 -2.9987 -1.2150 38 1 8.8214 -1.9921 -3.4707 39 1 8.8209 -0.3667 -2.7452 40 1 11.5646 -0.3614 -1.0562 41 1 12.3345 -0.1391 -2.6456 42 1 10.7930 0.6733 -2.2819 43 1 13.1938 -1.6218 -3.7193 44 1 13.1941 -2.3479 -2.0941 45 1 16.2089 -6.5346 -4.9401 46 1 6.9828 -2.2689 0.7484 47 1 7.0756 -3.7615 -0.2176 48 1 4.7593 -3.3343 0.5942 49 1 4.8510 -3.2910 -1.1832 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317812659.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:43 Heat of formation + Delta-G solvation = 36.102323 kcal Electronic energy + Delta-G solvation = -26262.285470 eV Core-core repulsion = 22545.527164 eV Total energy + Delta-G solvation = -3716.758306 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.93922 -39.27458 -36.83463 -35.30638 -34.18000 -32.42563 -31.55165 -31.05971 -29.94941 -28.33223 -26.76762 -25.64242 -25.26992 -24.21212 -22.73175 -21.93150 -20.08267 -19.14751 -18.52483 -17.66372 -16.91413 -16.52951 -16.03283 -15.74059 -15.56978 -15.19852 -15.11145 -14.80500 -14.77173 -14.58204 -14.27029 -13.85088 -13.51414 -13.43052 -13.19538 -12.98104 -12.78067 -12.56051 -12.46904 -12.29147 -12.15120 -12.01862 -11.76301 -11.57400 -11.32885 -11.19079 -11.06996 -11.01296 -10.80897 -10.72743 -10.59081 -10.43328 -9.79209 -9.35479 -9.07102 -8.82692 -8.63310 -8.44791 -8.21335 -6.49534 -6.21411 -3.91840 2.36046 2.43368 2.88507 3.06649 3.21538 3.25172 3.30778 3.40665 3.53875 3.83662 4.08541 4.20514 4.49248 4.52978 4.68966 4.71544 4.79768 4.92475 5.01383 5.04990 5.07634 5.11005 5.13894 5.15437 5.16910 5.21079 5.37365 5.42721 5.43914 5.49160 5.53262 5.57416 5.57680 5.59964 5.67643 5.68952 5.73675 5.85853 5.91105 6.01798 6.13870 6.51847 6.58211 6.63949 6.83639 6.88494 7.20335 7.53410 7.60242 8.35674 8.57253 9.24041 10.86071 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.038518 B = 0.001614 C = 0.001582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.751449 B =17345.051922 C =17697.314671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.186 4.186 3 C -0.010 4.010 4 C 0.061 3.939 5 N -0.541 5.541 6 C 0.053 3.947 7 C 0.054 3.946 8 N -0.537 5.537 9 C 0.043 3.957 10 C 0.123 3.877 11 N -0.626 5.626 12 C 0.081 3.919 13 C 0.532 3.468 14 O -0.511 6.511 15 C -0.150 4.150 16 S -0.062 6.062 17 C -0.534 4.534 18 H 0.073 0.927 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.918 3.082 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.059 3.941 26 C 0.059 3.941 27 H 0.217 0.783 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.039 0.961 32 H 0.045 0.955 33 H 0.081 0.919 34 H 0.042 0.958 35 H 0.082 0.918 36 H 0.035 0.965 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.071 0.929 40 H 0.052 0.948 41 H 0.076 0.924 42 H 0.066 0.934 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.268 0.732 46 H 0.042 0.958 47 H 0.083 0.917 48 H 0.080 0.920 49 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.314 14.961 10.769 30.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.186 4.186 3 C -0.047 4.047 4 C -0.067 4.067 5 N -0.266 5.266 6 C -0.075 4.075 7 C -0.075 4.075 8 N -0.262 5.262 9 C -0.085 4.085 10 C -0.001 4.001 11 N -0.362 5.362 12 C -0.062 4.062 13 C 0.320 3.680 14 O -0.385 6.385 15 C -0.301 4.301 16 S 0.165 5.835 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.069 4.069 26 C -0.069 4.069 27 H 0.233 0.767 28 H 0.105 0.895 29 H 0.113 0.887 30 H 0.097 0.903 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.099 0.901 34 H 0.061 0.939 35 H 0.100 0.900 36 H 0.053 0.947 37 H 0.101 0.899 38 H 0.110 0.890 39 H 0.089 0.911 40 H 0.071 0.929 41 H 0.094 0.906 42 H 0.085 0.915 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.078 0.922 46 H 0.061 0.939 47 H 0.101 0.899 48 H 0.098 0.902 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -25.141 13.351 10.049 30.188 hybrid contribution 1.705 1.387 0.685 2.303 sum -23.436 14.738 10.734 29.693 Atomic orbital electron populations 1.24929 0.96004 1.00386 1.01361 1.23070 0.94493 1.00765 1.00304 1.18704 0.84265 0.97809 1.03941 1.21991 0.87259 0.96274 1.01132 1.62140 1.06860 1.14290 1.43320 1.22249 0.94678 0.98524 0.92088 1.22227 0.94142 0.89913 1.01188 1.62050 1.07612 1.13375 1.43156 1.22465 0.86317 1.02364 0.97396 1.21326 0.79378 1.01069 0.98287 1.47849 1.06011 1.18074 1.64292 1.21772 0.97586 0.87742 0.99135 1.20360 0.89654 0.81632 0.76360 1.90707 1.69822 1.33233 1.44736 1.23564 0.93561 1.07639 1.05319 1.85409 1.04035 1.13881 1.80210 1.22899 0.91049 1.06029 1.48279 0.90912 1.24987 0.99591 0.94448 0.94534 1.70032 1.35218 1.06183 1.38830 0.86125 0.83073 0.78350 0.77993 1.19618 1.20574 1.20571 1.22140 0.93978 0.98895 0.91906 1.22160 0.94620 0.88803 1.01342 0.76651 0.89505 0.88683 0.90295 0.94223 0.93633 0.90105 0.93940 0.90008 0.94723 0.89945 0.89014 0.91099 0.92913 0.90555 0.91495 0.89262 0.89315 0.92247 0.93940 0.89872 0.90157 0.93597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.40 19.25 29.55 0.57 -0.83 16 2 C -0.19 -1.40 13.34 -37.12 -0.50 -1.90 16 3 C -0.01 -0.06 5.64 -29.52 -0.17 -0.23 16 4 C 0.06 0.41 4.91 -3.83 -0.02 0.39 16 5 N -0.54 -4.16 4.71 -234.46 -1.10 -5.26 16 6 C 0.05 0.39 5.41 -3.77 -0.02 0.37 16 7 C 0.05 0.44 5.41 -3.76 -0.02 0.42 16 8 N -0.54 -5.52 4.71 -234.46 -1.10 -6.63 16 9 C 0.04 0.50 5.28 -3.82 -0.02 0.48 16 10 C 0.12 1.50 5.38 -4.04 -0.02 1.47 16 11 N -0.63 -8.75 2.87 -181.56 -0.52 -9.27 16 12 C 0.08 0.83 10.29 59.85 0.62 1.44 16 13 C 0.53 10.11 7.69 -10.98 -0.08 10.03 16 14 O -0.51 -11.70 15.44 5.56 0.09 -11.62 16 15 C -0.15 -3.05 4.71 36.01 0.17 -2.88 16 16 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 17 C -0.53 -15.20 9.50 30.94 0.29 -14.91 16 18 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 20 N -0.87 -26.16 13.22 55.49 0.73 -25.43 16 21 Si 0.92 21.36 29.55 -169.99 -5.02 16.34 16 22 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 C 0.06 0.55 5.61 -3.77 -0.02 0.53 16 26 C 0.06 0.48 5.61 -3.76 -0.02 0.46 16 27 H 0.22 0.74 7.80 -54.10 -0.42 0.32 16 28 H 0.09 0.48 6.49 -51.93 -0.34 0.14 16 29 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.52 8.03 -51.93 -0.42 0.10 16 31 H 0.04 0.29 8.12 -51.93 -0.42 -0.13 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.48 6.34 -51.93 -0.33 0.15 16 34 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.08 0.61 6.34 -51.93 -0.33 0.28 16 36 H 0.03 0.38 8.12 -51.93 -0.42 -0.05 16 37 H 0.08 1.16 8.03 -51.93 -0.42 0.74 16 38 H 0.09 1.35 7.42 -51.93 -0.39 0.96 16 39 H 0.07 0.67 6.25 -51.93 -0.32 0.35 16 40 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.79 6.44 -51.93 -0.33 0.46 16 42 H 0.07 0.51 7.89 -51.93 -0.41 0.10 16 43 H 0.09 1.67 7.40 -51.92 -0.38 1.29 16 44 H 0.09 1.67 8.11 -51.91 -0.42 1.25 16 45 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 46 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.08 0.80 8.07 -51.93 -0.42 0.38 16 48 H 0.08 0.56 8.07 -51.93 -0.42 0.14 16 49 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 409.81 15.07 6.18 6.18 Total: -1.00 -34.63 409.81 -10.58 -45.21 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -8.27 Total: -2.47 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: 0.66 Total: -3.15 kcal Atomic # 7 Polarization: -44.59 SS G_CDS: -2.00 Total: -46.59 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.09 Total: -11.62 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -34.63 -10.58 -45.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317812659.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.312 kcal (2) G-P(sol) polarization free energy of solvation -34.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds