Wall clock time and date at job start Tue Mar 31 2020 23:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47168 * 10.26207 * 3 2 1 5 5 N 1.46896 * 109.47114 * 179.97438 * 4 3 2 6 6 C 1.46956 * 111.00264 * 293.80085 * 5 4 3 7 7 C 1.53048 * 109.36563 * 176.81245 * 6 5 4 8 8 N 1.46963 * 109.36781 * 58.39854 * 7 6 5 9 9 C 1.46896 * 110.99868 * 176.81328 * 8 7 6 10 10 C 1.53005 * 109.46888 * 293.79536 * 9 8 7 11 11 N 1.46506 * 109.46712 * 180.02562 * 10 9 8 12 12 C 1.46502 * 120.00214 * 270.00066 * 11 10 9 13 13 C 1.34775 * 119.99574 * 90.00672 * 11 10 9 14 14 O 1.21280 * 120.00473 * 359.97438 * 13 11 10 15 15 C 1.50706 * 119.99862 * 180.02562 * 13 11 10 16 16 S 1.80996 * 109.47315 * 179.97438 * 15 13 11 17 17 C 1.76201 * 100.00110 * 179.97438 * 16 15 13 18 18 H 1.07999 * 119.99729 * 0.02562 * 17 16 15 19 19 C 1.38793 * 119.99979 * 180.02562 * 17 16 15 20 20 N 1.31632 * 120.00017 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00108 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46842 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47342 * 119.99761 * 21 19 17 24 24 H 1.48501 * 109.47253 * 239.99755 * 21 19 17 25 25 C 1.46957 * 110.87713 * 300.68055 * 8 7 6 26 26 C 1.46963 * 111.00169 * 169.99835 * 5 4 3 27 27 H 4.44645 * 5.63342 * 179.97438 * 4 1 2 28 28 H 1.09001 * 109.47046 * 130.25833 * 3 2 1 29 29 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 30 30 H 1.09001 * 109.47289 * 300.00032 * 4 3 2 31 31 H 1.09004 * 109.47261 * 59.99776 * 4 3 2 32 32 H 1.09006 * 109.48298 * 296.77713 * 6 5 4 33 33 H 1.09000 * 109.49028 * 56.84339 * 6 5 4 34 34 H 1.08998 * 109.49036 * 298.43023 * 7 6 5 35 35 H 1.09001 * 109.49100 * 178.36836 * 7 6 5 36 36 H 1.08997 * 109.47364 * 53.79771 * 9 8 7 37 37 H 1.09005 * 109.46879 * 173.79995 * 9 8 7 38 38 H 1.08997 * 109.47309 * 300.00268 * 10 9 8 39 39 H 1.08995 * 109.46860 * 60.01065 * 10 9 8 40 40 H 1.09003 * 109.46492 * 90.00076 * 12 11 10 41 41 H 1.08998 * 109.47261 * 209.99988 * 12 11 10 42 42 H 1.08997 * 109.47002 * 330.00674 * 12 11 10 43 43 H 1.09001 * 109.46873 * 299.99831 * 15 13 11 44 44 H 1.09004 * 109.47209 * 59.99414 * 15 13 11 45 45 H 0.97003 * 119.99733 * 179.97438 * 20 19 17 46 46 H 1.08997 * 109.48761 * 299.34899 * 25 8 7 47 47 H 1.09000 * 109.48710 * 179.28489 * 25 8 7 48 48 H 1.09002 * 109.48412 * 303.15760 * 26 5 4 49 49 H 1.08998 * 109.48746 * 63.21928 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.4185 -0.2570 5 7 4.6256 -1.4177 -0.2576 6 6 5.1514 -0.6492 -1.3945 7 6 6.6792 -0.6059 -1.3146 8 7 7.2066 -1.9776 -1.3208 9 6 8.6756 -1.9768 -1.3214 10 6 9.1847 -1.3886 -2.6389 11 7 10.6498 -1.3883 -2.6397 12 6 11.3824 -0.2297 -2.1228 13 6 11.3235 -2.4540 -3.1159 14 8 10.7171 -3.4133 -3.5435 15 6 12.8306 -2.4540 -3.1162 16 16 13.4338 -4.0123 -3.8118 17 6 15.1718 -3.7472 -3.6946 18 1 15.5506 -2.8237 -3.2824 19 6 16.0540 -4.7253 -4.1321 20 7 15.5923 -5.8512 -4.6341 21 14 17.8966 -4.4446 -4.0073 22 1 18.1545 -3.1093 -3.4111 23 1 18.5004 -5.4954 -3.1490 24 1 18.4996 -4.5059 -5.3629 25 6 6.6808 -2.7461 -0.1839 26 6 5.1530 -2.7894 -0.2638 27 1 -1.0498 -0.0004 0.0001 28 1 3.0090 0.6649 -0.7843 29 1 3.0092 0.3479 0.9672 30 1 2.7936 -2.0829 0.5272 31 1 2.7934 -1.7658 -1.2243 32 1 4.8494 -1.1265 -2.3268 33 1 4.7566 0.3662 -1.3607 34 1 6.9812 -0.1044 -0.3952 35 1 7.0729 -0.0610 -2.1726 36 1 9.0389 -1.3733 -0.4896 37 1 9.0395 -2.9987 -1.2150 38 1 8.8214 -1.9921 -3.4707 39 1 8.8209 -0.3667 -2.7452 40 1 11.5646 -0.3614 -1.0562 41 1 12.3345 -0.1391 -2.6456 42 1 10.7930 0.6733 -2.2819 43 1 13.1938 -1.6218 -3.7193 44 1 13.1941 -2.3479 -2.0941 45 1 16.2089 -6.5346 -4.9401 46 1 6.9828 -2.2689 0.7484 47 1 7.0756 -3.7615 -0.2176 48 1 4.7593 -3.3343 0.5942 49 1 4.8510 -3.2910 -1.1832 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317812659.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:42 Heat of formation + Delta-G solvation = 12.118879 kcal Electronic energy + Delta-G solvation = -26263.325470 eV Core-core repulsion = 22545.527164 eV Total energy + Delta-G solvation = -3717.798306 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.99060 -40.28863 -37.65579 -36.42898 -34.81398 -34.58107 -32.39922 -31.84161 -30.90653 -29.42598 -27.69392 -27.62216 -26.31894 -24.88960 -23.48067 -22.76925 -20.77129 -20.59059 -19.52338 -18.98977 -18.08905 -17.60648 -17.02870 -16.87588 -16.73616 -16.45394 -16.05610 -15.90135 -15.71562 -15.58262 -15.18747 -15.04773 -14.58102 -14.39689 -14.32602 -14.06286 -13.90049 -13.57117 -13.49128 -13.19836 -13.13921 -13.08767 -12.91528 -12.83838 -12.64596 -12.54227 -12.25235 -12.09420 -11.90381 -11.70360 -11.57786 -11.15484 -11.11888 -10.94472 -10.88689 -10.25538 -9.76859 -9.44988 -9.27065 -8.67035 -8.34284 -6.12640 1.26243 1.41786 1.46346 1.56855 1.58796 1.84009 1.92242 2.07658 2.27712 2.82413 2.95763 3.00077 3.28091 3.63448 3.69577 3.87260 3.89038 3.98184 4.06154 4.17264 4.20639 4.22272 4.32653 4.38912 4.41272 4.46405 4.46665 4.48572 4.52671 4.62157 4.69704 4.80610 4.83870 4.89088 4.92478 4.94580 4.96497 4.99484 5.03005 5.11655 5.20552 5.42407 5.54408 5.89315 5.92658 6.10540 6.12823 6.20375 6.27817 6.71036 7.07088 7.15577 8.75276 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.038518 B = 0.001614 C = 0.001582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.751449 B =17345.051922 C =17697.314671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.217 4.217 3 C -0.005 4.005 4 C 0.066 3.934 5 N -0.542 5.542 6 C 0.054 3.946 7 C 0.055 3.945 8 N -0.550 5.550 9 C 0.055 3.945 10 C 0.125 3.875 11 N -0.611 5.611 12 C 0.071 3.929 13 C 0.529 3.471 14 O -0.563 6.563 15 C -0.123 4.123 16 S -0.155 6.155 17 C -0.544 4.544 18 H 0.083 0.917 19 C 0.014 3.986 20 N -0.912 5.912 21 Si 0.999 3.001 22 H -0.255 1.255 23 H -0.274 1.274 24 H -0.274 1.274 25 C 0.060 3.940 26 C 0.063 3.937 27 H 0.241 0.759 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.079 0.921 31 H 0.032 0.968 32 H 0.033 0.967 33 H 0.101 0.899 34 H 0.047 0.953 35 H 0.093 0.907 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.062 0.938 39 H 0.110 0.890 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.103 0.897 43 H 0.109 0.891 44 H 0.107 0.893 45 H 0.271 0.729 46 H 0.044 0.956 47 H 0.072 0.928 48 H 0.092 0.908 49 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.313 18.170 12.100 32.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.218 4.218 3 C -0.042 4.042 4 C -0.062 4.062 5 N -0.267 5.267 6 C -0.074 4.074 7 C -0.073 4.073 8 N -0.276 5.276 9 C -0.074 4.074 10 C 0.002 3.998 11 N -0.346 5.346 12 C -0.071 4.071 13 C 0.317 3.683 14 O -0.441 6.441 15 C -0.274 4.274 16 S 0.072 5.928 17 C -0.692 4.692 18 H 0.101 0.899 19 C -0.191 4.191 20 N -0.549 5.549 21 Si 0.821 3.179 22 H -0.179 1.179 23 H -0.200 1.200 24 H -0.200 1.200 25 C -0.068 4.068 26 C -0.065 4.065 27 H 0.258 0.742 28 H 0.113 0.887 29 H 0.117 0.883 30 H 0.098 0.902 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.119 0.881 34 H 0.065 0.935 35 H 0.111 0.889 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.128 0.872 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.121 0.879 43 H 0.127 0.873 44 H 0.125 0.875 45 H 0.080 0.920 46 H 0.062 0.938 47 H 0.090 0.910 48 H 0.110 0.890 49 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -25.165 16.623 11.410 32.245 hybrid contribution 1.544 0.486 0.321 1.650 sum -23.621 17.109 11.730 31.437 Atomic orbital electron populations 1.25699 0.96970 0.99431 1.00517 1.23539 0.95354 1.01689 1.01171 1.18669 0.83787 0.97323 1.04375 1.21949 0.86582 0.96881 1.00742 1.62172 1.07400 1.13746 1.43352 1.22286 0.94263 0.99446 0.91430 1.22301 0.94553 0.88608 1.01849 1.62036 1.06766 1.14988 1.43789 1.22231 0.87321 1.00460 0.97365 1.21432 0.78038 1.02743 0.97545 1.47838 1.06920 1.17486 1.62323 1.22123 0.97862 0.87267 0.99810 1.20181 0.89110 0.82360 0.76659 1.90691 1.70393 1.35528 1.47490 1.23381 0.94664 1.03556 1.05823 1.85616 1.05439 1.20061 1.81685 1.23223 0.91052 1.06568 1.48333 0.89865 1.26128 1.05296 0.93918 0.93767 1.70198 1.37275 1.07388 1.39992 0.84903 0.75833 0.78959 0.78238 1.17887 1.19981 1.19954 1.22117 0.94721 0.98274 0.91663 1.22111 0.93797 0.89371 1.01266 0.74243 0.88738 0.88329 0.90245 0.94963 0.94825 0.88064 0.93461 0.88888 0.93342 0.93369 0.91975 0.87208 0.91372 0.90580 0.87854 0.87292 0.87527 0.92021 0.93761 0.90978 0.88971 0.94852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.49 19.25 74.32 1.43 -1.06 16 2 C -0.22 -3.02 13.34 31.13 0.42 -2.60 16 3 C 0.00 -0.05 5.64 28.79 0.16 0.11 16 4 C 0.07 0.83 4.91 86.30 0.42 1.25 16 5 N -0.54 -7.63 4.71 -895.71 -4.22 -11.85 16 6 C 0.05 0.71 5.41 86.31 0.47 1.17 16 7 C 0.05 0.78 5.41 86.31 0.47 1.25 16 8 N -0.55 -10.95 4.71 -895.71 -4.22 -15.17 16 9 C 0.06 1.24 5.28 86.31 0.46 1.69 16 10 C 0.13 2.88 5.38 86.38 0.47 3.34 16 11 N -0.61 -16.08 2.87 -846.74 -2.43 -18.51 16 12 C 0.07 1.18 10.29 127.77 1.31 2.50 16 13 C 0.53 20.18 7.69 87.66 0.67 20.86 16 14 O -0.56 -26.92 15.44 -3.03 -0.05 -26.97 16 15 C -0.12 -4.96 4.71 71.24 0.34 -4.62 16 16 S -0.16 -8.73 20.57 -56.49 -1.16 -9.89 16 17 C -0.54 -31.13 9.50 67.95 0.65 -30.49 16 18 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 19 C 0.01 0.77 5.49 84.86 0.47 1.24 16 20 N -0.91 -56.33 13.22 21.65 0.29 -56.04 16 21 Si 1.00 43.57 29.55 68.60 2.03 45.60 16 22 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 23 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 24 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 25 C 0.06 1.12 5.61 86.31 0.48 1.60 16 26 C 0.06 1.00 5.61 86.31 0.48 1.48 16 27 H 0.24 1.17 7.80 -4.43 -0.03 1.14 16 28 H 0.09 0.86 6.49 -2.39 -0.02 0.84 16 29 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.08 0.98 8.03 -2.39 -0.02 0.96 16 31 H 0.03 0.45 8.12 -2.38 -0.02 0.43 16 32 H 0.03 0.53 8.14 -2.38 -0.02 0.51 16 33 H 0.10 0.93 6.34 -2.39 -0.02 0.92 16 34 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.09 1.11 6.34 -2.39 -0.02 1.09 16 36 H 0.05 0.95 8.12 -2.39 -0.02 0.93 16 37 H 0.05 1.41 8.03 -2.38 -0.02 1.39 16 38 H 0.06 1.85 7.42 -2.39 -0.02 1.83 16 39 H 0.11 1.69 6.25 -2.39 -0.01 1.67 16 40 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.08 1.32 6.44 -2.39 -0.02 1.30 16 42 H 0.10 1.04 7.89 -2.39 -0.02 1.02 16 43 H 0.11 3.94 7.40 -2.39 -0.02 3.92 16 44 H 0.11 3.89 8.11 -2.39 -0.02 3.87 16 45 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 46 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.07 1.46 8.07 -2.39 -0.02 1.44 16 48 H 0.09 1.23 8.07 -2.39 -0.02 1.21 16 49 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -78.88 409.81 -0.16 -79.04 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: 0.91 Total: 16.07 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: 8.69 Total: -2.28 kcal Atomic # 7 Polarization: -90.99 SS G_CDS: -10.58 Total: -101.57 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -0.05 Total: -26.97 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: -8.73 SS G_CDS: -1.16 Total: -9.89 kcal Total: -78.88 -0.16 -79.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317812659.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.158 kcal (2) G-P(sol) polarization free energy of solvation -78.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds