Wall clock time and date at job start Tue Mar 31 2020 23:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47310 * 2 1 4 4 C 1.46504 * 120.00207 * 275.98447 * 3 2 1 5 5 C 1.52996 * 109.46992 * 269.99971 * 4 3 2 6 6 N 1.46504 * 109.46867 * 179.97438 * 5 4 3 7 7 C 1.36941 * 119.99987 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99764 * 0.02562 * 7 6 5 9 9 C 1.38806 * 120.00232 * 180.02562 * 7 6 5 10 10 N 1.31618 * 120.00484 * 180.02562 * 9 7 6 11 11 Si 1.86806 * 119.99728 * 0.02562 * 9 7 6 12 12 H 1.48492 * 109.47074 * 90.00167 * 11 9 7 13 13 H 1.48503 * 109.46997 * 210.00152 * 11 9 7 14 14 H 1.48500 * 109.47020 * 329.99618 * 11 9 7 15 15 C 1.34776 * 119.99987 * 95.98597 * 3 2 1 16 16 O 1.21284 * 120.00096 * 186.45256 * 15 3 2 17 17 C 1.50696 * 119.99758 * 6.44401 * 15 3 2 18 18 H 1.08996 * 109.47502 * 48.75074 * 17 15 3 19 19 C 1.53003 * 109.47490 * 288.74430 * 17 15 3 20 20 N 1.46502 * 109.47158 * 168.74530 * 17 15 3 21 21 C 1.34776 * 120.00208 * 205.00450 * 20 17 15 22 22 O 1.21279 * 120.00122 * 359.97438 * 21 20 17 23 23 C 1.50700 * 120.00075 * 179.97438 * 21 20 17 24 24 N 1.46496 * 109.47557 * 179.97438 * 23 21 20 25 25 C 1.34603 * 126.43781 * 124.99535 * 24 23 21 26 26 N 1.31076 * 106.67851 * 180.02562 * 25 24 23 27 27 N 1.28847 * 107.98774 * 0.02562 * 26 25 24 28 28 N 1.28738 * 109.39964 * 359.73206 * 27 26 25 29 29 H 1.09004 * 109.47246 * 188.26027 * 1 2 3 30 30 H 1.08997 * 109.47045 * 308.26021 * 1 2 3 31 31 H 1.09004 * 109.47061 * 68.26267 * 1 2 3 32 32 H 1.09006 * 109.46831 * 240.00045 * 2 1 3 33 33 H 1.08998 * 109.47299 * 120.00401 * 2 1 3 34 34 H 1.09006 * 109.46711 * 29.99691 * 4 3 2 35 35 H 1.08998 * 109.47258 * 149.99870 * 4 3 2 36 36 H 1.08996 * 109.47173 * 299.99647 * 5 4 3 37 37 H 1.08997 * 109.47577 * 60.00253 * 5 4 3 38 38 H 0.96999 * 119.99915 * 0.02562 * 6 5 4 39 39 H 0.96993 * 120.00574 * 179.97438 * 10 9 7 40 40 H 1.08992 * 109.47042 * 306.15207 * 19 17 15 41 41 H 1.09000 * 109.46936 * 186.15168 * 19 17 15 42 42 H 1.08994 * 109.46650 * 66.15313 * 19 17 15 43 43 H 0.97007 * 119.99903 * 24.99454 * 20 17 15 44 44 H 1.09007 * 109.47338 * 300.00309 * 23 21 20 45 45 H 1.09008 * 109.46974 * 59.99874 * 23 21 20 46 46 H 1.07993 * 126.66209 * 359.97187 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1379 2.1159 -1.2618 5 6 3.5320 1.8934 -1.8514 6 7 3.6513 2.6277 -3.1136 7 6 4.8193 2.5783 -3.8267 8 1 5.6524 1.9976 -3.4589 9 6 4.9325 3.2744 -5.0223 10 7 6.0549 3.2265 -5.7080 11 14 3.4918 4.2792 -5.6580 12 1 3.5831 5.6642 -5.1303 13 1 3.5275 4.3117 -7.1422 14 1 2.2194 3.6605 -5.2070 15 6 2.3578 1.9759 1.1608 16 8 2.6498 3.1530 1.1765 17 6 2.3742 1.1784 2.4394 18 1 2.9260 0.2517 2.2825 19 6 0.9384 0.8529 2.8560 20 7 3.0233 1.9605 3.4945 21 6 3.6049 1.3343 4.5366 22 8 3.5905 0.1233 4.6012 23 6 4.2731 2.1388 5.6216 24 7 4.8238 1.2329 6.6327 25 6 6.0994 1.1927 7.0603 26 7 6.1642 0.2436 7.9620 27 7 4.9896 -0.2725 8.0815 28 7 4.1762 0.3264 7.2835 29 1 -0.3634 -1.0170 0.1476 30 1 -0.3633 0.6363 0.8069 31 1 -0.3633 0.3806 -0.9546 32 1 1.8933 -0.5139 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.3850 1.7572 -1.9638 35 1 1.9864 3.1797 -1.0786 36 1 4.2848 2.2521 -1.1495 37 1 3.6836 0.8297 -2.0347 38 1 2.9032 3.1495 -3.4436 39 1 6.1339 3.7126 -6.5436 40 1 0.3573 1.7735 2.9068 41 1 0.9441 0.3723 3.8343 42 1 0.4912 0.1808 2.1236 43 1 3.0347 2.9292 3.4429 44 1 5.0778 2.7339 5.1896 45 1 3.5417 2.8000 6.0865 46 1 6.9120 1.8199 6.7249 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320888957.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:22 Heat of formation + Delta-G solvation = 86.305244 kcal Electronic energy + Delta-G solvation = -29364.193300 eV Core-core repulsion = 25135.611493 eV Total energy + Delta-G solvation = -4228.581807 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.51103 -41.03972 -39.81209 -36.70837 -36.06714 -35.49893 -34.84411 -32.81992 -32.30216 -31.39572 -30.76720 -29.26498 -28.24132 -25.16101 -24.20011 -24.01375 -23.78466 -23.00103 -21.58064 -21.07281 -19.67091 -18.55895 -18.26055 -17.67596 -17.32292 -17.01257 -16.51999 -16.36019 -16.19571 -15.73419 -15.16494 -14.71972 -14.63620 -14.23437 -14.12669 -13.99459 -13.85339 -13.66857 -13.17886 -13.00030 -12.93268 -12.71622 -12.64693 -12.46497 -12.10153 -11.91450 -11.68833 -11.58068 -11.47884 -11.36796 -11.26091 -11.17427 -10.83275 -10.80164 -10.45558 -10.24473 -10.10942 -9.71393 -9.66508 -8.97605 -8.84292 -7.33016 -5.83075 -3.20256 0.84529 1.35690 1.82973 1.95598 2.22712 2.34716 2.84462 3.31481 3.35006 3.40479 3.62474 3.83308 3.89881 3.99642 4.13453 4.38914 4.52838 4.53976 4.59828 4.69367 4.86014 5.03414 5.04272 5.10494 5.24001 5.29494 5.31509 5.33796 5.41769 5.49630 5.53901 5.61031 5.62690 5.63625 5.72648 5.82742 5.94991 6.23124 6.49263 6.63604 6.78753 7.13641 7.47313 7.83681 7.91820 8.27446 8.34815 9.12754 9.84775 10.03390 11.35044 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.015020 B = 0.002238 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.766856 B =12507.835969 C =13690.501830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.094 3.906 3 N -0.598 5.598 4 C 0.103 3.897 5 C 0.147 3.853 6 N -0.753 5.753 7 C -0.246 4.246 8 H 0.090 0.910 9 C 0.005 3.995 10 N -0.932 5.932 11 Si 0.887 3.113 12 H -0.283 1.283 13 H -0.290 1.290 14 H -0.277 1.277 15 C 0.512 3.488 16 O -0.531 6.531 17 C 0.128 3.872 18 H 0.115 0.885 19 C -0.175 4.175 20 N -0.704 5.704 21 C 0.506 3.494 22 O -0.509 6.509 23 C 0.097 3.903 24 N -0.302 5.302 25 C 0.163 3.837 26 N -0.306 5.306 27 N -0.078 5.078 28 N -0.065 5.065 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.029 0.971 37 H 0.027 0.973 38 H 0.361 0.639 39 H 0.260 0.740 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.090 0.910 43 H 0.414 0.586 44 H 0.148 0.852 45 H 0.139 0.861 46 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.548 -2.069 22.810 25.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.029 4.029 3 N -0.331 5.331 4 C -0.019 4.019 5 C 0.019 3.981 6 N -0.399 5.399 7 C -0.376 4.376 8 H 0.107 0.893 9 C -0.191 4.191 10 N -0.580 5.580 11 Si 0.717 3.283 12 H -0.210 1.210 13 H -0.216 1.216 14 H -0.204 1.204 15 C 0.299 3.701 16 O -0.408 6.408 17 C 0.020 3.980 18 H 0.133 0.867 19 C -0.233 4.233 20 N -0.360 5.360 21 C 0.289 3.711 22 O -0.383 6.383 23 C -0.029 4.029 24 N -0.104 5.104 25 C -0.136 4.136 26 N -0.153 5.153 27 N -0.072 5.072 28 N -0.051 5.051 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.106 0.894 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.047 0.953 37 H 0.045 0.955 38 H 0.194 0.806 39 H 0.070 0.930 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.108 0.892 43 H 0.252 0.748 44 H 0.166 0.834 45 H 0.156 0.844 46 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -10.685 -3.434 23.585 26.120 hybrid contribution -0.559 2.024 -1.496 2.578 sum -11.244 -1.409 22.090 24.827 Atomic orbital electron populations 1.22412 0.95486 1.02739 1.03131 1.21793 0.94744 0.82227 1.04162 1.47797 1.64298 1.14466 1.06526 1.21782 0.99036 0.97837 0.83275 1.20875 0.93363 0.95692 0.88196 1.42541 1.15210 1.59290 1.22850 1.19007 0.91057 1.25975 1.01537 0.89259 1.24682 0.96867 1.00190 0.97329 1.69696 1.25049 1.46585 1.16670 0.86521 0.82751 0.80789 0.78269 1.20958 1.21626 1.20369 1.20408 0.77070 0.87713 0.84934 1.90719 1.48419 1.15624 1.86026 1.20814 0.96231 0.95433 0.85542 0.86696 1.22512 0.93692 1.03170 1.03919 1.45583 1.56941 1.11568 1.21871 1.20101 0.79440 0.88720 0.82866 1.90866 1.57842 1.13251 1.76335 1.21964 1.02972 0.90555 0.87370 1.48143 1.08276 1.25586 1.28413 1.27803 0.88677 1.00696 0.96379 1.75019 1.16066 1.07972 1.16267 1.78687 0.94571 1.18871 1.15074 1.79005 1.22133 0.99695 1.04264 0.91033 0.91556 0.91767 0.89355 0.89869 0.90216 0.89476 0.95321 0.95482 0.80624 0.92950 0.91578 0.90661 0.89154 0.74795 0.83414 0.84361 0.74711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.16 9.16 37.16 0.34 -0.82 16 2 C 0.09 0.76 5.60 -4.04 -0.02 0.73 16 3 N -0.60 -6.74 2.47 -173.69 -0.43 -7.17 16 4 C 0.10 1.47 5.59 -4.04 -0.02 1.45 16 5 C 0.15 2.76 6.58 -4.04 -0.03 2.73 16 6 N -0.75 -17.57 5.41 -59.91 -0.32 -17.90 16 7 C -0.25 -6.93 10.47 -15.06 -0.16 -7.09 16 8 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 9 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 10 N -0.93 -29.06 13.97 55.49 0.78 -28.28 16 11 Si 0.89 21.69 27.74 -169.99 -4.71 16.98 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 14 H -0.28 -6.28 6.52 56.52 0.37 -5.91 16 15 C 0.51 5.92 7.03 -10.99 -0.08 5.84 16 16 O -0.53 -7.77 15.39 5.55 0.09 -7.68 16 17 C 0.13 1.11 2.14 -69.08 -0.15 0.96 16 18 H 0.12 1.07 6.51 -51.93 -0.34 0.73 16 19 C -0.17 -1.21 8.59 37.16 0.32 -0.89 16 20 N -0.70 -5.08 5.01 -54.93 -0.28 -5.35 16 21 C 0.51 3.88 7.81 -10.99 -0.09 3.79 16 22 O -0.51 -6.22 15.37 5.56 0.09 -6.14 16 23 C 0.10 0.35 6.96 -5.20 -0.04 0.31 16 24 N -0.30 -2.31 3.19 -63.73 -0.20 -2.52 16 25 C 0.16 1.10 12.79 -90.38 -1.16 -0.05 16 26 N -0.31 -3.45 12.36 29.59 0.37 -3.09 16 27 N -0.08 -1.04 13.43 60.35 0.81 -0.23 16 28 N -0.06 -0.76 12.30 60.35 0.74 -0.02 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.42 6.00 -51.93 -0.31 0.11 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.73 8.12 -51.93 -0.42 0.31 16 33 H 0.08 0.55 5.35 -51.93 -0.28 0.27 16 34 H 0.08 1.02 8.07 -51.93 -0.42 0.61 16 35 H 0.09 1.36 7.34 -51.93 -0.38 0.98 16 36 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.36 8.11 5.53 -40.82 -0.23 7.89 16 39 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.09 0.53 3.61 -51.93 -0.19 0.34 16 43 H 0.41 2.43 7.72 -40.82 -0.31 2.12 16 44 H 0.15 -0.08 8.08 -51.92 -0.42 -0.50 16 45 H 0.14 0.10 8.14 -51.92 -0.42 -0.33 16 46 H 0.24 0.25 8.06 -52.49 -0.42 -0.17 16 LS Contribution 383.34 15.07 5.78 5.78 Total: -1.00 -40.64 383.34 -4.74 -45.38 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -6.27 Total: 3.21 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: -1.17 Total: 7.03 kcal Atomic # 7 Polarization: -66.02 SS G_CDS: 1.46 Total: -64.56 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: 0.17 Total: -13.82 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.71 Total: 16.98 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -40.64 -4.74 -45.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320888957.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.689 kcal (2) G-P(sol) polarization free energy of solvation -40.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds