Wall clock time and date at job start Tue Mar 31 2020 23:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47310 * 2 1 4 4 C 1.46504 * 120.00207 * 275.98447 * 3 2 1 5 5 C 1.52996 * 109.46992 * 269.99971 * 4 3 2 6 6 N 1.46504 * 109.46867 * 179.97438 * 5 4 3 7 7 C 1.36941 * 119.99987 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99764 * 0.02562 * 7 6 5 9 9 C 1.38806 * 120.00232 * 180.02562 * 7 6 5 10 10 N 1.31618 * 120.00484 * 180.02562 * 9 7 6 11 11 Si 1.86806 * 119.99728 * 0.02562 * 9 7 6 12 12 H 1.48492 * 109.47074 * 90.00167 * 11 9 7 13 13 H 1.48503 * 109.46997 * 210.00152 * 11 9 7 14 14 H 1.48500 * 109.47020 * 329.99618 * 11 9 7 15 15 C 1.34776 * 119.99987 * 95.98597 * 3 2 1 16 16 O 1.21284 * 120.00096 * 186.45256 * 15 3 2 17 17 C 1.50696 * 119.99758 * 6.44401 * 15 3 2 18 18 H 1.08996 * 109.47502 * 48.75074 * 17 15 3 19 19 C 1.53003 * 109.47490 * 288.74430 * 17 15 3 20 20 N 1.46502 * 109.47158 * 168.74530 * 17 15 3 21 21 C 1.34776 * 120.00208 * 205.00450 * 20 17 15 22 22 O 1.21279 * 120.00122 * 359.97438 * 21 20 17 23 23 C 1.50700 * 120.00075 * 179.97438 * 21 20 17 24 24 N 1.46496 * 109.47557 * 179.97438 * 23 21 20 25 25 C 1.34603 * 126.43781 * 124.99535 * 24 23 21 26 26 N 1.31076 * 106.67851 * 180.02562 * 25 24 23 27 27 N 1.28847 * 107.98774 * 0.02562 * 26 25 24 28 28 N 1.28738 * 109.39964 * 359.73206 * 27 26 25 29 29 H 1.09004 * 109.47246 * 188.26027 * 1 2 3 30 30 H 1.08997 * 109.47045 * 308.26021 * 1 2 3 31 31 H 1.09004 * 109.47061 * 68.26267 * 1 2 3 32 32 H 1.09006 * 109.46831 * 240.00045 * 2 1 3 33 33 H 1.08998 * 109.47299 * 120.00401 * 2 1 3 34 34 H 1.09006 * 109.46711 * 29.99691 * 4 3 2 35 35 H 1.08998 * 109.47258 * 149.99870 * 4 3 2 36 36 H 1.08996 * 109.47173 * 299.99647 * 5 4 3 37 37 H 1.08997 * 109.47577 * 60.00253 * 5 4 3 38 38 H 0.96999 * 119.99915 * 0.02562 * 6 5 4 39 39 H 0.96993 * 120.00574 * 179.97438 * 10 9 7 40 40 H 1.08992 * 109.47042 * 306.15207 * 19 17 15 41 41 H 1.09000 * 109.46936 * 186.15168 * 19 17 15 42 42 H 1.08994 * 109.46650 * 66.15313 * 19 17 15 43 43 H 0.97007 * 119.99903 * 24.99454 * 20 17 15 44 44 H 1.09007 * 109.47338 * 300.00309 * 23 21 20 45 45 H 1.09008 * 109.46974 * 59.99874 * 23 21 20 46 46 H 1.07993 * 126.66209 * 359.97187 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1379 2.1159 -1.2618 5 6 3.5320 1.8934 -1.8514 6 7 3.6513 2.6277 -3.1136 7 6 4.8193 2.5783 -3.8267 8 1 5.6524 1.9976 -3.4589 9 6 4.9325 3.2744 -5.0223 10 7 6.0549 3.2265 -5.7080 11 14 3.4918 4.2792 -5.6580 12 1 3.5831 5.6642 -5.1303 13 1 3.5275 4.3117 -7.1422 14 1 2.2194 3.6605 -5.2070 15 6 2.3578 1.9759 1.1608 16 8 2.6498 3.1530 1.1765 17 6 2.3742 1.1784 2.4394 18 1 2.9260 0.2517 2.2825 19 6 0.9384 0.8529 2.8560 20 7 3.0233 1.9605 3.4945 21 6 3.6049 1.3343 4.5366 22 8 3.5905 0.1233 4.6012 23 6 4.2731 2.1388 5.6216 24 7 4.8238 1.2329 6.6327 25 6 6.0994 1.1927 7.0603 26 7 6.1642 0.2436 7.9620 27 7 4.9896 -0.2725 8.0815 28 7 4.1762 0.3264 7.2835 29 1 -0.3634 -1.0170 0.1476 30 1 -0.3633 0.6363 0.8069 31 1 -0.3633 0.3806 -0.9546 32 1 1.8933 -0.5139 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.3850 1.7572 -1.9638 35 1 1.9864 3.1797 -1.0786 36 1 4.2848 2.2521 -1.1495 37 1 3.6836 0.8297 -2.0347 38 1 2.9032 3.1495 -3.4436 39 1 6.1339 3.7126 -6.5436 40 1 0.3573 1.7735 2.9068 41 1 0.9441 0.3723 3.8343 42 1 0.4912 0.1808 2.1236 43 1 3.0347 2.9292 3.4429 44 1 5.0778 2.7339 5.1896 45 1 3.5417 2.8000 6.0865 46 1 6.9120 1.8199 6.7249 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320888957.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:21 Heat of formation + Delta-G solvation = 53.476428 kcal Electronic energy + Delta-G solvation = -29365.616864 eV Core-core repulsion = 25135.611493 eV Total energy + Delta-G solvation = -4230.005371 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.17199 -41.82612 -40.58110 -37.79544 -36.79793 -36.52542 -36.06474 -33.90165 -33.47929 -32.54889 -31.64457 -29.90461 -29.48645 -26.22252 -25.15985 -24.82132 -24.47003 -24.05668 -23.11590 -21.76421 -20.56824 -19.72137 -19.13103 -18.78701 -18.08048 -17.83687 -17.23512 -17.14868 -16.90125 -16.52452 -16.32921 -15.94198 -15.64849 -15.44221 -15.23033 -15.10970 -14.74513 -14.56703 -14.48646 -13.89694 -13.65946 -13.60245 -13.46244 -13.31714 -13.13768 -13.00704 -12.87135 -12.69258 -12.53722 -12.27385 -12.22875 -12.14999 -12.10450 -11.94158 -11.84799 -11.50314 -11.11250 -11.03541 -10.98186 -10.40264 -9.82959 -9.38376 -8.06320 -5.42547 0.24792 0.90998 1.24816 1.25522 1.36994 1.39989 1.42268 1.49131 1.61011 2.10589 2.46436 3.15292 3.22164 3.25095 3.47447 3.53939 3.69296 3.90350 3.92963 4.00564 4.01049 4.04062 4.10157 4.12271 4.35518 4.39079 4.50163 4.52639 4.57877 4.69939 4.72121 4.82549 4.88234 4.99682 5.04456 5.11260 5.12523 5.18332 5.41634 5.43994 5.69687 6.16152 6.23910 6.24154 6.89802 6.94723 7.02678 7.57230 7.75300 7.96245 9.14854 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.015020 B = 0.002238 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.766856 B =12507.835969 C =13690.501830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.088 3.912 3 N -0.598 5.598 4 C 0.118 3.882 5 C 0.149 3.851 6 N -0.754 5.754 7 C -0.241 4.241 8 H 0.051 0.949 9 C -0.063 4.063 10 N -0.983 5.983 11 Si 0.960 3.040 12 H -0.279 1.279 13 H -0.294 1.294 14 H -0.244 1.244 15 C 0.511 3.489 16 O -0.565 6.565 17 C 0.133 3.867 18 H 0.109 0.891 19 C -0.166 4.166 20 N -0.699 5.699 21 C 0.505 3.495 22 O -0.560 6.560 23 C 0.095 3.905 24 N -0.299 5.299 25 C 0.184 3.816 26 N -0.347 5.347 27 N -0.118 5.118 28 N -0.092 5.092 29 H 0.091 0.909 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.076 0.924 36 H 0.007 0.993 37 H 0.030 0.970 38 H 0.369 0.631 39 H 0.260 0.740 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.102 0.898 43 H 0.423 0.577 44 H 0.199 0.801 45 H 0.173 0.827 46 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.578 -0.760 23.222 26.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.034 4.034 3 N -0.329 5.329 4 C -0.006 4.006 5 C 0.021 3.979 6 N -0.400 5.400 7 C -0.372 4.372 8 H 0.070 0.930 9 C -0.255 4.255 10 N -0.632 5.632 11 Si 0.786 3.214 12 H -0.205 1.205 13 H -0.220 1.220 14 H -0.168 1.168 15 C 0.299 3.701 16 O -0.443 6.443 17 C 0.024 3.976 18 H 0.127 0.873 19 C -0.224 4.224 20 N -0.354 5.354 21 C 0.290 3.710 22 O -0.437 6.437 23 C -0.028 4.028 24 N -0.102 5.102 25 C -0.114 4.114 26 N -0.194 5.194 27 N -0.113 5.113 28 N -0.080 5.080 29 H 0.109 0.891 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.105 0.895 33 H 0.116 0.884 34 H 0.119 0.881 35 H 0.095 0.905 36 H 0.025 0.975 37 H 0.048 0.952 38 H 0.203 0.797 39 H 0.069 0.931 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.120 0.880 43 H 0.262 0.738 44 H 0.216 0.784 45 H 0.191 0.809 46 H 0.307 0.693 Dipole moment (debyes) X Y Z Total from point charges -12.768 -2.135 24.039 27.303 hybrid contribution 0.182 1.607 -1.634 2.299 sum -12.587 -0.528 22.405 25.704 Atomic orbital electron populations 1.22377 0.93814 1.04065 1.02988 1.22049 0.96079 0.80375 1.04894 1.47859 1.64130 1.15516 1.05431 1.21440 0.96369 0.97887 0.84883 1.20961 0.95896 0.94920 0.86086 1.42483 1.13832 1.59850 1.23856 1.18953 0.91699 1.24724 1.01835 0.93045 1.25594 1.00174 1.02004 0.97731 1.69888 1.27839 1.48200 1.17314 0.85344 0.80085 0.78895 0.77069 1.20475 1.22014 1.16826 1.20893 0.76044 0.87476 0.85724 1.90699 1.49835 1.17167 1.86633 1.20741 0.97466 0.94699 0.84649 0.87330 1.22459 0.92447 1.03570 1.03883 1.45576 1.56531 1.11897 1.21398 1.20763 0.78626 0.88382 0.83231 1.90856 1.59794 1.15598 1.77497 1.22490 1.05388 0.89377 0.85540 1.48396 1.08491 1.24997 1.28269 1.28772 0.89232 0.99237 0.94170 1.74908 1.15926 1.09955 1.18632 1.78645 0.95577 1.20459 1.16580 1.78903 1.23047 1.01044 1.04967 0.89068 0.91207 0.92293 0.89485 0.88402 0.88062 0.90538 0.97513 0.95222 0.79739 0.93140 0.91121 0.91157 0.87976 0.73807 0.78429 0.80937 0.69291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.76 9.16 71.98 0.66 -1.10 16 2 C 0.09 1.22 5.60 86.38 0.48 1.71 16 3 N -0.60 -12.48 2.47 -821.81 -2.03 -14.51 16 4 C 0.12 3.16 5.59 86.38 0.48 3.65 16 5 C 0.15 5.51 6.58 86.38 0.57 6.08 16 6 N -0.75 -34.58 5.41 -343.46 -1.86 -36.44 16 7 C -0.24 -13.78 10.47 84.03 0.88 -12.90 16 8 H 0.05 3.25 8.06 -2.91 -0.02 3.23 16 9 C -0.06 -3.71 5.50 84.86 0.47 -3.24 16 10 N -0.98 -62.62 13.97 21.65 0.30 -62.32 16 11 Si 0.96 44.18 27.74 68.60 1.90 46.09 16 12 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 13 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 14 H -0.24 -9.80 6.52 99.48 0.65 -9.15 16 15 C 0.51 11.10 7.03 87.66 0.62 11.72 16 16 O -0.56 -15.88 15.39 -3.04 -0.05 -15.93 16 17 C 0.13 2.12 2.14 44.24 0.09 2.21 16 18 H 0.11 1.91 6.51 -2.39 -0.02 1.90 16 19 C -0.17 -1.98 8.59 71.98 0.62 -1.36 16 20 N -0.70 -8.79 5.01 -446.10 -2.24 -11.03 16 21 C 0.50 6.83 7.81 87.66 0.68 7.51 16 22 O -0.56 -13.41 15.37 -3.03 -0.05 -13.46 16 23 C 0.10 0.36 6.96 85.63 0.60 0.95 16 24 N -0.30 -3.97 3.19 -355.55 -1.13 -5.10 16 25 C 0.18 2.04 12.79 180.26 2.31 4.35 16 26 N -0.35 -7.68 12.36 -60.29 -0.75 -8.42 16 27 N -0.12 -3.23 13.43 37.01 0.50 -2.73 16 28 N -0.09 -2.17 12.30 37.02 0.46 -1.71 16 29 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.07 0.67 6.00 -2.39 -0.01 0.66 16 31 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 32 H 0.09 1.27 8.12 -2.38 -0.02 1.25 16 33 H 0.10 1.10 5.35 -2.39 -0.01 1.09 16 34 H 0.10 2.31 8.07 -2.38 -0.02 2.29 16 35 H 0.08 2.27 7.34 -2.39 -0.02 2.25 16 36 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 37 H 0.03 1.09 8.14 -2.39 -0.02 1.08 16 38 H 0.37 15.73 5.53 -92.71 -0.51 15.21 16 39 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 40 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.10 0.95 3.61 -2.39 -0.01 0.94 16 43 H 0.42 4.01 7.72 -92.70 -0.72 3.29 16 44 H 0.20 -1.25 8.08 -2.38 -0.02 -1.27 16 45 H 0.17 -0.47 8.14 -2.38 -0.02 -0.49 16 46 H 0.29 -0.73 8.06 -2.91 -0.02 -0.75 16 Total: -1.00 -94.42 383.34 3.27 -91.15 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -0.25 Total: 14.84 kcal Atomic # 6 Polarization: 11.12 SS G_CDS: 8.46 Total: 19.58 kcal Atomic # 7 Polarization: -135.52 SS G_CDS: -6.75 Total: -142.27 kcal Atomic # 8 Polarization: -29.29 SS G_CDS: -0.09 Total: -29.38 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.90 Total: 46.09 kcal Total: -94.42 3.27 -91.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320888957.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.625 kcal (2) G-P(sol) polarization free energy of solvation -94.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds