Wall clock time and date at job start Tue Mar 31 2020 22:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.53004 * 109.47236 * 184.99998 * 4 2 1 6 6 C 1.52997 * 109.47236 * 180.02562 * 5 4 2 7 7 N 1.46502 * 109.47004 * 180.02562 * 6 5 4 8 8 C 1.36938 * 119.99817 * 180.02562 * 7 6 5 9 9 H 1.08000 * 120.00298 * 359.97438 * 8 7 6 10 10 C 1.38817 * 119.99790 * 179.97438 * 8 7 6 11 11 N 1.31620 * 119.99855 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99753 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.46894 * 90.00929 * 12 10 8 14 14 H 1.48499 * 109.46787 * 210.00436 * 12 10 8 15 15 H 1.48493 * 109.47410 * 330.00842 * 12 10 8 16 16 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 17 17 C 1.34769 * 119.99686 * 84.99974 * 16 2 1 18 18 O 1.21628 * 120.00667 * 359.97438 * 17 16 2 19 19 C 1.47272 * 119.99495 * 180.02562 * 17 16 2 20 20 C 1.35215 * 123.13648 * 180.02562 * 19 17 16 21 21 S 1.70950 * 108.82160 * 179.97438 * 20 19 17 22 22 C 1.70764 * 91.12838 * 0.02562 * 21 20 19 23 23 C 1.50703 * 124.71514 * 180.02562 * 22 21 20 24 24 C 1.53004 * 109.47051 * 239.97135 * 23 22 21 25 25 C 1.52995 * 109.47393 * 359.97335 * 23 22 21 26 26 C 1.52999 * 109.47175 * 119.97965 * 23 22 21 27 27 N 1.28644 * 110.56395 * 359.76501 * 22 21 20 28 28 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 29 29 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 30 30 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47630 * 305.00128 * 4 2 1 32 32 H 1.09004 * 109.47346 * 65.00258 * 4 2 1 33 33 H 1.09001 * 109.46917 * 300.00567 * 5 4 2 34 34 H 1.09004 * 109.46741 * 59.99889 * 5 4 2 35 35 H 1.08993 * 109.47322 * 300.00158 * 6 5 4 36 36 H 1.09004 * 109.46881 * 60.00519 * 6 5 4 37 37 H 0.97000 * 119.99888 * 359.97438 * 7 6 5 38 38 H 0.97002 * 119.99337 * 179.97438 * 11 10 8 39 39 H 0.97000 * 119.99634 * 265.00306 * 16 2 1 40 40 H 1.07993 * 125.58789 * 0.02562 * 20 19 17 41 41 H 1.09007 * 109.46833 * 60.00361 * 24 23 22 42 42 H 1.08999 * 109.47220 * 180.02562 * 24 23 22 43 43 H 1.08995 * 109.47319 * 300.00851 * 24 23 22 44 44 H 1.08997 * 109.46885 * 60.00388 * 25 23 22 45 45 H 1.08999 * 109.47263 * 180.02562 * 25 23 22 46 46 H 1.09007 * 109.47262 * 300.00111 * 25 23 22 47 47 H 1.09002 * 109.47640 * 59.99329 * 26 23 22 48 48 H 1.09005 * 109.47468 * 180.02562 * 26 23 22 49 49 H 1.09008 * 109.46521 * 299.99456 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3138 6 6 4.0748 -1.3351 2.5627 7 7 5.5348 -1.2312 2.6248 8 6 6.2186 -1.8062 3.6626 9 1 5.6816 -2.3359 4.4355 10 6 7.6020 -1.7082 3.7211 11 7 8.2564 -1.0622 2.7794 12 14 8.5348 -2.4920 5.1371 13 1 8.8972 -3.8870 4.7792 14 1 9.7701 -1.7135 5.4073 15 1 7.6786 -2.4988 6.3504 16 7 2.0184 -0.6906 -1.1962 17 6 2.1472 -0.0183 -2.3570 18 8 1.8574 1.1617 -2.4119 19 6 2.6376 -0.7127 -3.5596 20 6 2.7914 -0.1007 -4.7555 21 16 3.3782 -1.2401 -5.8867 22 6 3.3836 -2.4670 -4.6990 23 6 3.8120 -3.8919 -4.9388 24 6 2.6447 -4.8333 -4.6353 25 6 4.2349 -4.0583 -6.3997 26 6 4.9911 -4.2306 -4.0246 27 7 2.9762 -2.0046 -3.5698 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6053 -0.2617 2.1370 32 1 1.7516 -1.7715 1.2056 33 1 3.9994 -1.0728 0.4261 34 1 3.8531 0.4370 1.3574 35 1 3.6402 -0.8760 3.4506 36 1 3.7864 -2.3853 2.5186 37 1 6.0171 -0.7557 1.9304 38 1 9.2231 -0.9935 2.8206 39 1 2.2491 -1.6318 -1.1525 40 1 2.5793 0.9379 -4.9618 41 1 1.8045 -4.5920 -5.2866 42 1 2.9546 -5.8639 -4.8083 43 1 2.3433 -4.7147 -3.5946 44 1 5.0665 -3.3877 -6.6158 45 1 4.5443 -5.0889 -6.5732 46 1 3.3948 -3.8170 -7.0510 47 1 4.6898 -4.1120 -2.9838 48 1 5.3013 -5.2610 -4.1983 49 1 5.8228 -3.5599 -4.2408 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330939653.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:52 Heat of formation + Delta-G solvation = -13.310669 kcal Electronic energy + Delta-G solvation = -27083.353005 eV Core-core repulsion = 23364.451991 eV Total energy + Delta-G solvation = -3718.901014 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.74532 -39.22867 -37.07526 -36.52172 -34.79563 -32.53003 -31.14960 -30.25276 -29.33240 -27.80519 -27.53063 -26.16930 -25.54831 -23.62806 -22.75628 -20.87308 -20.65118 -20.18426 -19.67713 -18.52020 -16.98451 -16.72511 -16.27850 -15.72907 -15.56414 -14.77050 -14.63741 -14.49424 -14.48968 -14.13845 -13.90098 -13.64269 -13.54447 -13.38482 -12.96628 -12.66796 -12.65258 -12.46472 -12.23438 -12.06424 -12.02484 -11.99318 -11.87191 -11.37266 -11.29169 -11.26961 -11.11634 -10.82943 -10.75762 -10.44080 -10.35404 -10.13295 -9.99928 -9.96031 -9.84421 -9.64646 -9.22606 -8.96576 -8.82378 -6.86870 -5.71946 -3.00412 0.31223 0.98086 1.39046 1.82044 3.16447 3.30223 3.45951 3.50598 3.52806 3.62477 4.32518 4.53210 4.54680 4.60612 4.78005 4.87853 4.98324 5.06394 5.10893 5.18048 5.21695 5.28001 5.43407 5.47520 5.50531 5.54114 5.60598 5.61531 5.62473 5.67131 5.67708 5.79371 5.84516 5.96977 6.01203 6.09483 6.10903 6.18010 6.26582 6.41222 6.47026 6.52361 6.92754 6.96046 7.17147 7.57067 7.73533 8.16232 8.47113 9.57754 10.17487 10.51930 11.51118 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009114 B = 0.002824 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3071.291949 B = 9912.999827 C =11835.093984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.140 3.860 3 H 0.090 0.910 4 C -0.122 4.122 5 C -0.126 4.126 6 C 0.154 3.846 7 N -0.735 5.735 8 C -0.238 4.238 9 H 0.070 0.930 10 C -0.016 4.016 11 N -0.934 5.934 12 Si 0.907 3.093 13 H -0.290 1.290 14 H -0.291 1.291 15 H -0.282 1.282 16 N -0.701 5.701 17 C 0.595 3.405 18 O -0.539 6.539 19 C 0.014 3.986 20 C -0.234 4.234 21 S 0.207 5.793 22 C 0.041 3.959 23 C 0.011 3.989 24 C -0.135 4.135 25 C -0.155 4.155 26 C -0.138 4.138 27 N -0.438 5.438 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.017 0.983 36 H 0.016 0.984 37 H 0.383 0.617 38 H 0.254 0.746 39 H 0.410 0.590 40 H 0.188 0.812 41 H 0.055 0.945 42 H 0.066 0.934 43 H 0.068 0.932 44 H 0.064 0.936 45 H 0.077 0.923 46 H 0.062 0.938 47 H 0.071 0.929 48 H 0.067 0.933 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.178 -4.757 -22.098 27.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.036 3.964 3 H 0.108 0.892 4 C -0.160 4.160 5 C -0.164 4.164 6 C 0.026 3.974 7 N -0.378 5.378 8 C -0.369 4.369 9 H 0.088 0.912 10 C -0.212 4.212 11 N -0.583 5.583 12 Si 0.738 3.262 13 H -0.217 1.217 14 H -0.218 1.218 15 H -0.208 1.208 16 N -0.352 5.352 17 C 0.379 3.621 18 O -0.417 6.417 19 C -0.121 4.121 20 C -0.376 4.376 21 S 0.466 5.534 22 C -0.239 4.239 23 C 0.008 3.992 24 C -0.193 4.193 25 C -0.214 4.214 26 C -0.196 4.196 27 N -0.152 5.152 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.098 0.902 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.035 0.965 36 H 0.034 0.966 37 H 0.217 0.783 38 H 0.064 0.936 39 H 0.246 0.754 40 H 0.205 0.795 41 H 0.074 0.926 42 H 0.085 0.915 43 H 0.087 0.913 44 H 0.083 0.917 45 H 0.096 0.904 46 H 0.081 0.919 47 H 0.090 0.910 48 H 0.086 0.914 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.129 -4.265 -22.512 27.457 hybrid contribution 0.575 -0.107 1.400 1.518 sum -14.554 -4.372 -21.112 26.012 Atomic orbital electron populations 1.22170 0.95328 1.02071 1.02411 1.21111 0.93699 0.97824 0.83796 0.89213 1.21845 0.96929 1.00828 0.96440 1.21736 0.93646 1.01407 0.99615 1.20638 0.86157 0.96432 0.94157 1.42387 1.00236 1.66150 1.29069 1.19250 0.89457 1.26945 1.01290 0.91231 1.24752 0.96446 1.01288 0.98676 1.69673 1.07135 1.46987 1.34501 0.86185 0.79512 0.78643 0.81850 1.21740 1.21778 1.20774 1.45914 1.65670 1.14684 1.08916 1.17053 0.77396 0.85672 0.82014 1.90802 1.51134 1.14949 1.84804 1.20432 1.06667 0.89619 0.95416 1.26646 1.06707 1.07044 0.97173 1.82806 1.57072 0.99124 1.14408 1.27206 1.03216 1.01546 0.91944 1.19263 0.97140 0.86011 0.96822 1.21851 0.96321 0.98234 1.02924 1.22047 1.01934 1.03581 0.93788 1.21880 0.96007 1.01753 0.99994 1.66796 1.12613 1.10813 1.25016 0.91413 0.92363 0.92473 0.90175 0.91356 0.91995 0.91999 0.96518 0.96568 0.78348 0.93573 0.75411 0.79523 0.92602 0.91455 0.91270 0.91699 0.90437 0.91872 0.91008 0.91433 0.92281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 9.48 37.16 0.35 -1.39 16 2 C 0.14 1.77 2.57 -67.93 -0.17 1.60 16 3 H 0.09 1.29 7.58 -51.93 -0.39 0.90 16 4 C -0.12 -1.57 4.75 -26.73 -0.13 -1.69 16 5 C -0.13 -2.14 5.22 -26.73 -0.14 -2.27 16 6 C 0.15 3.21 6.26 -4.04 -0.03 3.19 16 7 N -0.73 -19.56 5.60 -59.91 -0.34 -19.90 16 8 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 9 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 10 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 11 N -0.93 -29.11 13.06 55.49 0.72 -28.39 16 12 Si 0.91 22.90 29.55 -169.99 -5.02 17.87 16 13 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 14 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 15 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 16 N -0.70 -9.29 4.53 -54.93 -0.25 -9.54 16 17 C 0.60 8.81 7.76 -12.59 -0.10 8.72 16 18 O -0.54 -9.28 16.37 5.25 0.09 -9.20 16 19 C 0.01 0.18 6.70 -84.52 -0.57 -0.39 16 20 C -0.23 -2.58 10.62 29.66 0.31 -2.26 16 21 S 0.21 1.70 21.28 -107.50 -2.29 -0.58 16 22 C 0.04 0.41 5.74 -13.61 -0.08 0.33 16 23 C 0.01 0.09 0.99 -155.66 -0.15 -0.07 16 24 C -0.13 -0.97 8.45 37.16 0.31 -0.65 16 25 C -0.16 -0.86 7.53 37.15 0.28 -0.58 16 26 C -0.14 -1.21 8.44 37.16 0.31 -0.90 16 27 N -0.44 -5.36 10.09 -8.51 -0.09 -5.45 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.06 1.10 7.75 -51.93 -0.40 0.69 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.38 10.78 7.67 -40.82 -0.31 10.46 16 38 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 39 H 0.41 5.16 8.12 -40.82 -0.33 4.83 16 40 H 0.19 1.88 8.03 -52.49 -0.42 1.45 16 41 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.06 0.35 7.91 -51.93 -0.41 -0.06 16 45 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.06 0.30 7.91 -51.93 -0.41 -0.11 16 47 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 LS Contribution 415.07 15.07 6.25 6.25 Total: -1.00 -34.14 415.07 -9.52 -43.66 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -8.57 Total: 9.28 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -0.04 Total: -4.01 kcal Atomic # 7 Polarization: -63.33 SS G_CDS: 0.05 Total: -63.27 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: 0.09 Total: -9.20 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.87 kcal Atomic # 16 Polarization: 1.70 SS G_CDS: -2.29 Total: -0.58 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -34.14 -9.52 -43.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330939653.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.351 kcal (2) G-P(sol) polarization free energy of solvation -34.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds