Wall clock time and date at job start Tue Mar 31 2020 22:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.53004 * 109.47236 * 184.99998 * 4 2 1 6 6 C 1.52997 * 109.47236 * 180.02562 * 5 4 2 7 7 N 1.46502 * 109.47004 * 180.02562 * 6 5 4 8 8 C 1.36938 * 119.99817 * 180.02562 * 7 6 5 9 9 H 1.08000 * 120.00298 * 359.97438 * 8 7 6 10 10 C 1.38817 * 119.99790 * 179.97438 * 8 7 6 11 11 N 1.31620 * 119.99855 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99753 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.46894 * 90.00929 * 12 10 8 14 14 H 1.48499 * 109.46787 * 210.00436 * 12 10 8 15 15 H 1.48493 * 109.47410 * 330.00842 * 12 10 8 16 16 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 17 17 C 1.34769 * 119.99686 * 84.99974 * 16 2 1 18 18 O 1.21628 * 120.00667 * 359.97438 * 17 16 2 19 19 C 1.47272 * 119.99495 * 180.02562 * 17 16 2 20 20 C 1.35215 * 123.13648 * 180.02562 * 19 17 16 21 21 S 1.70950 * 108.82160 * 179.97438 * 20 19 17 22 22 C 1.70764 * 91.12838 * 0.02562 * 21 20 19 23 23 C 1.50703 * 124.71514 * 180.02562 * 22 21 20 24 24 C 1.53004 * 109.47051 * 239.97135 * 23 22 21 25 25 C 1.52995 * 109.47393 * 359.97335 * 23 22 21 26 26 C 1.52999 * 109.47175 * 119.97965 * 23 22 21 27 27 N 1.28644 * 110.56395 * 359.76501 * 22 21 20 28 28 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 29 29 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 30 30 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47630 * 305.00128 * 4 2 1 32 32 H 1.09004 * 109.47346 * 65.00258 * 4 2 1 33 33 H 1.09001 * 109.46917 * 300.00567 * 5 4 2 34 34 H 1.09004 * 109.46741 * 59.99889 * 5 4 2 35 35 H 1.08993 * 109.47322 * 300.00158 * 6 5 4 36 36 H 1.09004 * 109.46881 * 60.00519 * 6 5 4 37 37 H 0.97000 * 119.99888 * 359.97438 * 7 6 5 38 38 H 0.97002 * 119.99337 * 179.97438 * 11 10 8 39 39 H 0.97000 * 119.99634 * 265.00306 * 16 2 1 40 40 H 1.07993 * 125.58789 * 0.02562 * 20 19 17 41 41 H 1.09007 * 109.46833 * 60.00361 * 24 23 22 42 42 H 1.08999 * 109.47220 * 180.02562 * 24 23 22 43 43 H 1.08995 * 109.47319 * 300.00851 * 24 23 22 44 44 H 1.08997 * 109.46885 * 60.00388 * 25 23 22 45 45 H 1.08999 * 109.47263 * 180.02562 * 25 23 22 46 46 H 1.09007 * 109.47262 * 300.00111 * 25 23 22 47 47 H 1.09002 * 109.47640 * 59.99329 * 26 23 22 48 48 H 1.09005 * 109.47468 * 180.02562 * 26 23 22 49 49 H 1.09008 * 109.46521 * 299.99456 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3138 6 6 4.0748 -1.3351 2.5627 7 7 5.5348 -1.2312 2.6248 8 6 6.2186 -1.8062 3.6626 9 1 5.6816 -2.3359 4.4355 10 6 7.6020 -1.7082 3.7211 11 7 8.2564 -1.0622 2.7794 12 14 8.5348 -2.4920 5.1371 13 1 8.8972 -3.8870 4.7792 14 1 9.7701 -1.7135 5.4073 15 1 7.6786 -2.4988 6.3504 16 7 2.0184 -0.6906 -1.1962 17 6 2.1472 -0.0183 -2.3570 18 8 1.8574 1.1617 -2.4119 19 6 2.6376 -0.7127 -3.5596 20 6 2.7914 -0.1007 -4.7555 21 16 3.3782 -1.2401 -5.8867 22 6 3.3836 -2.4670 -4.6990 23 6 3.8120 -3.8919 -4.9388 24 6 2.6447 -4.8333 -4.6353 25 6 4.2349 -4.0583 -6.3997 26 6 4.9911 -4.2306 -4.0246 27 7 2.9762 -2.0046 -3.5698 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6053 -0.2617 2.1370 32 1 1.7516 -1.7715 1.2056 33 1 3.9994 -1.0728 0.4261 34 1 3.8531 0.4370 1.3574 35 1 3.6402 -0.8760 3.4506 36 1 3.7864 -2.3853 2.5186 37 1 6.0171 -0.7557 1.9304 38 1 9.2231 -0.9935 2.8206 39 1 2.2491 -1.6318 -1.1525 40 1 2.5793 0.9379 -4.9618 41 1 1.8045 -4.5920 -5.2866 42 1 2.9546 -5.8639 -4.8083 43 1 2.3433 -4.7147 -3.5946 44 1 5.0665 -3.3877 -6.6158 45 1 4.5443 -5.0889 -6.5732 46 1 3.3948 -3.8170 -7.0510 47 1 4.6898 -4.1120 -2.9838 48 1 5.3013 -5.2610 -4.1983 49 1 5.8228 -3.5599 -4.2408 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330939653.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:51 Heat of formation + Delta-G solvation = -35.613827 kcal Electronic energy + Delta-G solvation = -27084.320143 eV Core-core repulsion = 23364.451991 eV Total energy + Delta-G solvation = -3719.868151 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.68512 -40.20405 -38.09166 -37.47478 -36.54381 -34.21571 -32.62885 -31.23174 -30.77279 -28.30904 -28.16456 -27.32059 -26.89632 -24.95208 -24.19160 -22.42574 -21.76804 -21.14700 -20.44155 -19.37610 -19.13439 -17.70552 -17.27888 -16.71234 -16.57484 -16.43068 -15.85707 -15.63143 -15.39289 -15.34690 -15.16083 -15.03920 -14.59781 -14.38666 -14.33843 -13.86123 -13.48964 -13.25740 -13.17016 -13.08563 -13.04632 -12.80688 -12.78265 -12.58638 -12.53235 -12.43058 -12.27155 -12.10977 -11.97457 -11.90934 -11.88819 -11.76634 -11.54068 -11.24302 -10.95141 -10.78159 -10.62727 -10.24776 -9.85024 -9.03086 -7.97023 -5.27053 -0.53079 0.23369 0.58746 0.87994 1.45588 1.48368 1.56948 2.15748 2.26870 2.54635 2.84938 3.36434 3.54248 3.63185 3.90782 3.94237 3.96702 4.05514 4.07687 4.18723 4.24910 4.31379 4.35924 4.54503 4.63558 4.68522 4.76388 4.77264 4.79315 4.82179 4.86555 4.87622 4.95930 4.98840 4.99910 5.06357 5.07512 5.26974 5.27937 5.32080 5.37805 5.38878 5.41207 5.47758 5.50654 6.24920 6.26301 6.57841 7.07406 7.30175 8.06529 8.29467 9.26934 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009114 B = 0.002824 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3071.291949 B = 9912.999827 C =11835.093984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.141 3.859 3 H 0.069 0.931 4 C -0.108 4.108 5 C -0.113 4.113 6 C 0.152 3.848 7 N -0.751 5.751 8 C -0.248 4.248 9 H 0.078 0.922 10 C -0.079 4.079 11 N -0.972 5.972 12 Si 0.978 3.022 13 H -0.284 1.284 14 H -0.295 1.295 15 H -0.268 1.268 16 N -0.697 5.697 17 C 0.589 3.411 18 O -0.574 6.574 19 C -0.015 4.015 20 C -0.248 4.248 21 S 0.290 5.710 22 C 0.023 3.977 23 C 0.011 3.989 24 C -0.132 4.132 25 C -0.155 4.155 26 C -0.137 4.137 27 N -0.460 5.460 28 H 0.085 0.915 29 H 0.044 0.956 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.049 0.951 34 H 0.047 0.953 35 H 0.023 0.977 36 H 0.024 0.976 37 H 0.370 0.630 38 H 0.251 0.749 39 H 0.413 0.587 40 H 0.192 0.808 41 H 0.061 0.939 42 H 0.084 0.916 43 H 0.048 0.952 44 H 0.066 0.934 45 H 0.094 0.906 46 H 0.074 0.926 47 H 0.044 0.956 48 H 0.085 0.915 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.999 -6.393 -22.809 28.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.037 3.963 3 H 0.087 0.913 4 C -0.146 4.146 5 C -0.151 4.151 6 C 0.026 3.974 7 N -0.393 5.393 8 C -0.380 4.380 9 H 0.096 0.904 10 C -0.271 4.271 11 N -0.623 5.623 12 Si 0.806 3.194 13 H -0.211 1.211 14 H -0.221 1.221 15 H -0.192 1.192 16 N -0.347 5.347 17 C 0.374 3.626 18 O -0.454 6.454 19 C -0.150 4.150 20 C -0.391 4.391 21 S 0.550 5.450 22 C -0.256 4.256 23 C 0.007 3.993 24 C -0.191 4.191 25 C -0.213 4.213 26 C -0.196 4.196 27 N -0.175 5.175 28 H 0.104 0.896 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.116 0.884 32 H 0.103 0.897 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.041 0.959 36 H 0.042 0.958 37 H 0.202 0.798 38 H 0.060 0.940 39 H 0.249 0.751 40 H 0.209 0.791 41 H 0.080 0.920 42 H 0.103 0.897 43 H 0.068 0.932 44 H 0.085 0.915 45 H 0.113 0.887 46 H 0.093 0.907 47 H 0.064 0.936 48 H 0.104 0.896 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.995 -5.938 -23.214 28.810 hybrid contribution 0.818 0.388 1.545 1.791 sum -15.177 -5.550 -21.669 27.031 Atomic orbital electron populations 1.22089 0.93359 1.02996 1.02625 1.21109 0.95145 0.96616 0.83480 0.91275 1.21754 0.93553 1.02125 0.97214 1.21582 0.96553 0.99718 0.97212 1.20831 0.83241 0.97279 0.96064 1.42661 1.02522 1.65892 1.28273 1.19690 0.90087 1.26435 1.01796 0.90441 1.25659 0.97492 1.02375 1.01552 1.69846 1.07079 1.48762 1.36628 0.85075 0.77811 0.77520 0.78974 1.21105 1.22118 1.19231 1.45948 1.65165 1.14742 1.08847 1.17387 0.76951 0.85436 0.82851 1.90763 1.52895 1.16279 1.85473 1.20323 1.08764 0.90457 0.95465 1.26949 1.06236 1.08137 0.97752 1.82437 1.54635 0.96327 1.11585 1.27732 1.02605 1.03073 0.92234 1.19397 0.96830 0.84876 0.98174 1.21834 0.96316 0.99094 1.01820 1.22078 1.02440 1.04850 0.91899 1.21869 0.96227 1.02749 0.98739 1.66781 1.13653 1.10526 1.26533 0.89631 0.93704 0.91139 0.88391 0.89699 0.93238 0.93409 0.95872 0.95818 0.79835 0.93987 0.75055 0.79125 0.91960 0.89693 0.93238 0.91497 0.88745 0.90709 0.93632 0.89587 0.93055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 9.48 71.98 0.68 -2.45 16 2 C 0.14 3.55 2.57 44.99 0.12 3.67 16 3 H 0.07 2.05 7.58 -2.39 -0.02 2.04 16 4 C -0.11 -2.65 4.75 30.59 0.15 -2.51 16 5 C -0.11 -3.84 5.22 30.59 0.16 -3.68 16 6 C 0.15 6.30 6.26 86.38 0.54 6.84 16 7 N -0.75 -40.56 5.60 -343.45 -1.92 -42.48 16 8 C -0.25 -14.45 9.99 84.03 0.84 -13.61 16 9 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 10 C -0.08 -4.68 5.50 84.86 0.47 -4.22 16 11 N -0.97 -61.70 13.06 21.65 0.28 -61.42 16 12 Si 0.98 47.13 29.55 68.60 2.03 49.15 16 13 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 14 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 15 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 16 N -0.70 -18.99 4.53 -445.94 -2.02 -21.01 16 17 C 0.59 18.23 7.76 86.62 0.67 18.90 16 18 O -0.57 -20.72 16.37 -4.12 -0.07 -20.78 16 19 C -0.01 -0.40 6.70 40.56 0.27 -0.13 16 20 C -0.25 -5.47 10.62 67.12 0.71 -4.75 16 21 S 0.29 4.32 21.28 -56.49 -1.20 3.12 16 22 C 0.02 0.44 5.74 88.58 0.51 0.95 16 23 C 0.01 0.16 0.99 -52.93 -0.05 0.10 16 24 C -0.13 -1.72 8.45 71.98 0.61 -1.11 16 25 C -0.15 -1.30 7.53 71.98 0.54 -0.76 16 26 C -0.14 -2.36 8.44 71.98 0.61 -1.75 16 27 N -0.46 -11.48 10.09 -180.83 -1.83 -13.30 16 28 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.05 1.80 7.75 -2.39 -0.02 1.78 16 34 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.02 0.96 8.14 -2.38 -0.02 0.94 16 37 H 0.37 21.50 7.67 -92.71 -0.71 20.78 16 38 H 0.25 15.37 8.31 -92.71 -0.77 14.60 16 39 H 0.41 10.67 8.12 -92.71 -0.75 9.91 16 40 H 0.19 3.89 8.03 -2.91 -0.02 3.87 16 41 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 42 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.07 0.55 7.91 -2.39 -0.02 0.53 16 45 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 46 H 0.07 0.47 7.91 -2.38 -0.02 0.45 16 47 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 48 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 49 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 Total: -1.00 -75.12 415.07 1.57 -73.55 By element: Atomic # 1 Polarization: 38.21 SS G_CDS: -0.53 Total: 37.69 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: 6.82 Total: -4.51 kcal Atomic # 7 Polarization: -132.73 SS G_CDS: -5.49 Total: -138.21 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -0.07 Total: -20.78 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.03 Total: 49.15 kcal Atomic # 16 Polarization: 4.32 SS G_CDS: -1.20 Total: 3.12 kcal Total: -75.12 1.57 -73.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330939653.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.940 kcal (2) G-P(sol) polarization free energy of solvation -75.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds