Wall clock time and date at job start Tue Mar 31 2020 23:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34223 * 117.00361 * 2 1 4 4 O 1.20820 * 120.00371 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00135 * 180.02562 * 3 2 1 6 6 C 1.52995 * 112.85220 * 185.78457 * 5 3 2 7 7 O 1.42895 * 109.46507 * 177.68475 * 6 5 3 8 8 C 1.53040 * 109.46108 * 297.65800 * 6 5 3 9 9 C 1.53191 * 109.31743 * 181.38365 * 8 6 5 10 10 N 1.46927 * 108.77324 * 305.36598 * 9 8 6 11 11 C 1.34780 * 120.62658 * 233.57933 * 10 9 8 12 12 O 1.21281 * 120.00127 * 0.02562 * 11 10 9 13 13 C 1.50705 * 119.99653 * 180.02562 * 11 10 9 14 14 C 1.52995 * 109.47123 * 180.02562 * 13 11 10 15 15 C 1.50695 * 109.47490 * 180.02562 * 14 13 11 16 16 H 1.08003 * 119.99812 * 359.97438 * 15 14 13 17 17 C 1.37870 * 120.00309 * 179.72138 * 15 14 13 18 18 N 1.31516 * 120.00137 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00173 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47122 * 60.00200 * 19 17 15 21 21 H 1.48502 * 109.47349 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47423 * 300.00193 * 19 17 15 23 23 C 1.46926 * 118.73772 * 53.85894 * 10 9 8 24 24 C 1.53046 * 109.46103 * 57.72461 * 6 5 3 25 25 C 1.53784 * 113.61301 * 316.97701 * 5 3 2 26 26 C 1.53951 * 87.01852 * 89.23093 * 25 5 3 27 27 C 1.53776 * 87.11257 * 25.36314 * 26 25 5 28 28 H 1.09004 * 109.47017 * 300.00248 * 1 2 3 29 29 H 1.09006 * 109.46744 * 60.00093 * 1 2 3 30 30 H 1.08998 * 109.47780 * 180.02562 * 1 2 3 31 31 H 0.96699 * 114.00859 * 179.97438 * 7 6 5 32 32 H 1.09007 * 109.49916 * 61.42820 * 8 6 5 33 33 H 1.09000 * 109.52244 * 301.35644 * 8 6 5 34 34 H 1.08996 * 109.59061 * 185.57762 * 9 8 6 35 35 H 1.08997 * 109.70394 * 65.21962 * 9 8 6 36 36 H 1.08993 * 109.47321 * 60.00383 * 13 11 10 37 37 H 1.09003 * 109.46993 * 300.00072 * 13 11 10 38 38 H 1.09006 * 109.47438 * 59.99822 * 14 13 11 39 39 H 1.09011 * 109.46963 * 300.00261 * 14 13 11 40 40 H 0.96999 * 120.00483 * 180.02562 * 18 17 15 41 41 H 1.09000 * 109.58586 * 65.93276 * 23 10 9 42 42 H 1.09002 * 109.58031 * 186.34939 * 23 10 9 43 43 H 1.08996 * 109.49353 * 298.56759 * 24 6 5 44 44 H 1.08994 * 109.49864 * 58.63078 * 24 6 5 45 45 H 1.08998 * 113.61815 * 203.74823 * 25 5 3 46 46 H 1.08998 * 113.61378 * 334.65426 * 25 5 3 47 47 H 1.09006 * 113.54057 * 270.81108 * 26 25 5 48 48 H 1.09003 * 113.66919 * 139.93421 * 26 25 5 49 49 H 1.09005 * 113.61666 * 220.08895 * 27 26 25 50 50 H 1.08999 * 113.61633 * 89.18773 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5663 1.2747 -0.0006 6 6 4.0864 2.7065 0.1416 7 8 5.5146 2.6921 0.1867 8 6 3.6226 3.5387 -1.0560 9 6 4.1738 4.9623 -0.9279 10 7 3.7752 5.5080 0.3768 11 6 3.1314 6.6892 0.4593 12 8 2.8754 7.3121 -0.5494 13 6 2.7296 7.2360 1.8050 14 6 2.0195 8.5783 1.6187 15 6 1.6183 9.1254 2.9643 16 1 1.8466 8.5708 3.8626 17 6 0.9644 10.3362 3.0491 18 7 0.6904 11.0136 1.9557 19 14 0.4665 11.0140 4.7171 20 1 1.6769 11.2003 5.5571 21 1 -0.2172 12.3198 4.5368 22 1 -0.4565 10.0604 5.3835 23 6 4.0973 4.7445 1.5901 24 6 3.5420 3.3208 1.4333 25 6 4.2357 0.2780 0.9603 26 6 4.2367 -0.7244 -0.2082 27 6 4.2238 0.4917 -1.1493 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 5.9142 3.5681 0.2759 32 1 2.5331 3.5709 -1.0767 33 1 3.9906 3.0876 -1.9775 34 1 3.7664 5.5850 -1.7243 35 1 5.2612 4.9431 -0.9991 36 1 3.6184 7.3770 2.4199 37 1 2.0557 6.5338 2.2959 38 1 1.1306 8.4369 1.0038 39 1 2.6931 9.2806 1.1275 40 1 0.2307 11.8657 2.0153 41 1 5.1787 4.7057 1.7210 42 1 3.6394 5.2237 2.4555 43 1 2.4534 3.3551 1.3892 44 1 3.8527 2.7142 2.2838 45 1 5.2339 0.5801 1.2772 46 1 3.5987 -0.0210 1.7927 47 1 3.3315 -1.3291 -0.2637 48 1 5.1484 -1.3182 -0.2745 49 1 3.5772 0.3651 -2.0176 50 1 5.2187 0.8525 -1.4103 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335355365.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:26:30 Heat of formation + Delta-G solvation = -149.473610 kcal Electronic energy + Delta-G solvation = -31576.663227 eV Core-core repulsion = 27376.812123 eV Total energy + Delta-G solvation = -4199.851104 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.85225 -40.02145 -38.89534 -37.45032 -36.70989 -34.99484 -33.50132 -31.93310 -31.37995 -30.54722 -28.51639 -27.34209 -26.25345 -25.64942 -23.99417 -23.24116 -22.39665 -21.52270 -20.26596 -19.83599 -18.55878 -17.64335 -17.43219 -16.68480 -16.56308 -16.39039 -15.91401 -15.59980 -15.38488 -15.04150 -14.91422 -14.77302 -14.40709 -14.03874 -13.80516 -13.65613 -13.09258 -13.06689 -12.71997 -12.58921 -12.48419 -12.31514 -12.16704 -12.04689 -11.97383 -11.82694 -11.48484 -11.37305 -11.12715 -11.09027 -10.89961 -10.88514 -10.85115 -10.59449 -10.53486 -10.11475 -9.93177 -9.92581 -9.56750 -9.15455 -8.96043 -8.41204 -8.28642 -5.93637 -3.98109 1.83484 2.23593 3.22629 3.28681 3.35672 3.40314 3.42233 3.83564 4.02092 4.16350 4.21718 4.45975 4.48591 4.57705 4.68687 4.78981 4.79951 4.89661 4.98555 5.03600 5.14745 5.17698 5.22307 5.35240 5.41029 5.42889 5.47223 5.52531 5.59159 5.61736 5.62857 5.67940 5.72759 5.78297 5.91920 6.02640 6.06553 6.11337 6.23283 6.24662 6.33705 6.74523 6.93023 7.31526 7.48234 7.75175 7.76821 7.89341 8.09920 8.40996 8.77294 9.10153 9.65132 11.17347 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.016795 B = 0.002710 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.810050 B =10327.827032 C =10950.492909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.352 6.352 3 C 0.484 3.516 4 O -0.486 6.486 5 C -0.076 4.076 6 C 0.169 3.831 7 O -0.554 6.554 8 C -0.167 4.167 9 C 0.110 3.890 10 N -0.625 5.625 11 C 0.515 3.485 12 O -0.533 6.533 13 C -0.128 4.128 14 C 0.038 3.962 15 C -0.527 4.527 16 H 0.055 0.945 17 C 0.058 3.942 18 N -0.890 5.890 19 Si 0.893 3.107 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C 0.108 3.892 24 C -0.170 4.170 25 C -0.111 4.111 26 C -0.142 4.142 27 C -0.111 4.111 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.102 0.898 31 H 0.382 0.618 32 H 0.096 0.904 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.060 0.940 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.023 0.977 39 H 0.023 0.977 40 H 0.261 0.739 41 H 0.065 0.935 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.078 0.922 45 H 0.105 0.895 46 H 0.070 0.930 47 H 0.090 0.910 48 H 0.073 0.927 49 H 0.068 0.932 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.489 -28.483 -4.025 29.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.269 6.269 3 C 0.327 3.673 4 O -0.373 6.373 5 C -0.077 4.077 6 C 0.129 3.871 7 O -0.363 6.363 8 C -0.205 4.205 9 C -0.013 4.013 10 N -0.362 5.362 11 C 0.305 3.695 12 O -0.408 6.408 13 C -0.168 4.168 14 C 0.000 4.000 15 C -0.565 4.565 16 H 0.073 0.927 17 C -0.144 4.144 18 N -0.529 5.529 19 Si 0.721 3.279 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.015 4.015 24 C -0.208 4.208 25 C -0.148 4.148 26 C -0.179 4.179 27 C -0.148 4.148 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.120 0.880 31 H 0.232 0.768 32 H 0.114 0.886 33 H 0.094 0.906 34 H 0.113 0.887 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.041 0.959 39 H 0.042 0.958 40 H 0.071 0.929 41 H 0.083 0.917 42 H 0.115 0.885 43 H 0.113 0.887 44 H 0.096 0.904 45 H 0.124 0.876 46 H 0.089 0.911 47 H 0.109 0.891 48 H 0.092 0.908 49 H 0.087 0.913 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 7.908 -28.279 -4.703 29.738 hybrid contribution -0.529 1.051 0.990 1.538 sum 7.379 -27.228 -3.713 28.453 Atomic orbital electron populations 1.23325 0.76029 1.03756 1.02937 1.86479 1.23444 1.32896 1.84080 1.22730 0.90501 0.81524 0.72586 1.90691 1.66774 1.35795 1.44000 1.21469 0.87458 0.95872 1.02890 1.20403 0.80898 0.91086 0.94746 1.86350 1.18227 1.35117 1.96586 1.22725 1.04325 0.95428 0.98026 1.21438 0.98514 0.93926 0.87442 1.48312 1.59961 1.21596 1.06299 1.21569 0.75546 0.79170 0.93182 1.90654 1.53714 1.58051 1.38389 1.21878 1.01509 1.01670 0.91762 1.18897 0.95696 0.88554 0.96845 1.21179 1.37826 1.04843 0.92671 0.92697 1.25022 0.95966 0.96946 0.96434 1.69989 1.41096 1.14498 1.27273 0.86655 0.78717 0.78215 0.84354 1.20247 1.21286 1.20262 1.21744 0.99800 0.91247 0.88738 1.22820 1.03921 0.96412 0.97664 1.22892 1.01726 0.93955 0.96248 1.22965 1.02907 0.96471 0.95559 1.22859 1.01672 0.95066 0.95196 0.91633 0.91722 0.87990 0.76842 0.88559 0.90633 0.88655 0.92169 0.90320 0.90315 0.95877 0.95840 0.92905 0.91667 0.88468 0.88662 0.90374 0.87640 0.91089 0.89102 0.90845 0.91278 0.87653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.56 101.05 1.07 1.30 16 2 O -0.35 -3.22 8.67 -39.24 -0.34 -3.56 16 3 C 0.48 5.27 6.60 36.01 0.24 5.51 16 4 O -0.49 -6.76 11.84 -18.75 -0.22 -6.98 16 5 C -0.08 -0.69 0.46 -154.85 -0.07 -0.76 16 6 C 0.17 1.69 0.34 -90.58 -0.03 1.66 16 7 O -0.55 -4.78 10.94 -35.23 -0.39 -5.17 16 8 C -0.17 -1.94 4.77 -26.61 -0.13 -2.07 16 9 C 0.11 1.44 6.00 -3.71 -0.02 1.41 16 10 N -0.63 -9.44 2.97 -172.50 -0.51 -9.95 16 11 C 0.51 10.46 7.70 -10.98 -0.08 10.37 16 12 O -0.53 -13.06 15.40 5.56 0.09 -12.98 16 13 C -0.13 -2.71 3.98 -27.88 -0.11 -2.82 16 14 C 0.04 1.04 4.26 -27.89 -0.12 0.92 16 15 C -0.53 -15.21 9.11 -34.45 -0.31 -15.53 16 16 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -27.87 13.29 55.43 0.74 -27.13 16 19 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 C 0.11 1.26 5.94 -3.49 -0.02 1.23 16 24 C -0.17 -1.86 4.75 -26.39 -0.13 -1.98 16 25 C -0.11 -0.84 6.65 -25.83 -0.17 -1.01 16 26 C -0.14 -0.95 7.64 -25.83 -0.20 -1.15 16 27 C -0.11 -0.85 6.51 -25.92 -0.17 -1.02 16 28 H 0.06 0.50 8.13 -51.93 -0.42 0.07 16 29 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 30 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.38 2.79 5.83 45.56 0.27 3.05 16 32 H 0.10 1.40 5.85 -51.92 -0.30 1.09 16 33 H 0.08 0.77 7.70 -51.93 -0.40 0.37 16 34 H 0.10 1.48 7.00 -51.93 -0.36 1.12 16 35 H 0.06 0.64 7.03 -51.93 -0.37 0.27 16 36 H 0.08 1.50 7.93 -51.93 -0.41 1.09 16 37 H 0.08 1.56 7.70 -51.93 -0.40 1.16 16 38 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 39 H 0.02 0.70 8.10 -51.92 -0.42 0.28 16 40 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 41 H 0.07 0.60 7.02 -51.93 -0.36 0.23 16 42 H 0.10 1.17 5.93 -51.93 -0.31 0.87 16 43 H 0.09 1.29 5.88 -51.93 -0.31 0.99 16 44 H 0.08 0.73 7.87 -51.93 -0.41 0.32 16 45 H 0.11 0.80 7.27 -51.93 -0.38 0.42 16 46 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 47 H 0.09 0.62 6.86 -51.93 -0.36 0.26 16 48 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 49 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 50 H 0.11 0.81 7.44 -51.93 -0.39 0.42 16 LS Contribution 383.00 15.07 5.77 5.77 Total: -1.00 -35.81 383.00 -7.64 -43.45 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -7.40 Total: 1.94 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -0.36 Total: -2.32 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: 0.22 Total: -37.08 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: -0.86 Total: -28.69 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.81 -7.64 -43.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335355365.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.023 kcal (2) G-P(sol) polarization free energy of solvation -35.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds