Wall clock time and date at job start Tue Mar 31 2020 23:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34223 * 117.00361 * 2 1 4 4 O 1.20820 * 120.00371 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00135 * 180.02562 * 3 2 1 6 6 C 1.52995 * 112.85220 * 185.78457 * 5 3 2 7 7 O 1.42895 * 109.46507 * 177.68475 * 6 5 3 8 8 C 1.53040 * 109.46108 * 297.65800 * 6 5 3 9 9 C 1.53191 * 109.31743 * 181.38365 * 8 6 5 10 10 N 1.46927 * 108.77324 * 305.36598 * 9 8 6 11 11 C 1.34780 * 120.62658 * 233.57933 * 10 9 8 12 12 O 1.21281 * 120.00127 * 0.02562 * 11 10 9 13 13 C 1.50705 * 119.99653 * 180.02562 * 11 10 9 14 14 C 1.52995 * 109.47123 * 180.02562 * 13 11 10 15 15 C 1.50695 * 109.47490 * 180.02562 * 14 13 11 16 16 H 1.08003 * 119.99812 * 359.97438 * 15 14 13 17 17 C 1.37870 * 120.00309 * 179.72138 * 15 14 13 18 18 N 1.31516 * 120.00137 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00173 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47122 * 60.00200 * 19 17 15 21 21 H 1.48502 * 109.47349 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47423 * 300.00193 * 19 17 15 23 23 C 1.46926 * 118.73772 * 53.85894 * 10 9 8 24 24 C 1.53046 * 109.46103 * 57.72461 * 6 5 3 25 25 C 1.53784 * 113.61301 * 316.97701 * 5 3 2 26 26 C 1.53951 * 87.01852 * 89.23093 * 25 5 3 27 27 C 1.53776 * 87.11257 * 25.36314 * 26 25 5 28 28 H 1.09004 * 109.47017 * 300.00248 * 1 2 3 29 29 H 1.09006 * 109.46744 * 60.00093 * 1 2 3 30 30 H 1.08998 * 109.47780 * 180.02562 * 1 2 3 31 31 H 0.96699 * 114.00859 * 179.97438 * 7 6 5 32 32 H 1.09007 * 109.49916 * 61.42820 * 8 6 5 33 33 H 1.09000 * 109.52244 * 301.35644 * 8 6 5 34 34 H 1.08996 * 109.59061 * 185.57762 * 9 8 6 35 35 H 1.08997 * 109.70394 * 65.21962 * 9 8 6 36 36 H 1.08993 * 109.47321 * 60.00383 * 13 11 10 37 37 H 1.09003 * 109.46993 * 300.00072 * 13 11 10 38 38 H 1.09006 * 109.47438 * 59.99822 * 14 13 11 39 39 H 1.09011 * 109.46963 * 300.00261 * 14 13 11 40 40 H 0.96999 * 120.00483 * 180.02562 * 18 17 15 41 41 H 1.09000 * 109.58586 * 65.93276 * 23 10 9 42 42 H 1.09002 * 109.58031 * 186.34939 * 23 10 9 43 43 H 1.08996 * 109.49353 * 298.56759 * 24 6 5 44 44 H 1.08994 * 109.49864 * 58.63078 * 24 6 5 45 45 H 1.08998 * 113.61815 * 203.74823 * 25 5 3 46 46 H 1.08998 * 113.61378 * 334.65426 * 25 5 3 47 47 H 1.09006 * 113.54057 * 270.81108 * 26 25 5 48 48 H 1.09003 * 113.66919 * 139.93421 * 26 25 5 49 49 H 1.09005 * 113.61666 * 220.08895 * 27 26 25 50 50 H 1.08999 * 113.61633 * 89.18773 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5663 1.2747 -0.0006 6 6 4.0864 2.7065 0.1416 7 8 5.5146 2.6921 0.1867 8 6 3.6226 3.5387 -1.0560 9 6 4.1738 4.9623 -0.9279 10 7 3.7752 5.5080 0.3768 11 6 3.1314 6.6892 0.4593 12 8 2.8754 7.3121 -0.5494 13 6 2.7296 7.2360 1.8050 14 6 2.0195 8.5783 1.6187 15 6 1.6183 9.1254 2.9643 16 1 1.8466 8.5708 3.8626 17 6 0.9644 10.3362 3.0491 18 7 0.6904 11.0136 1.9557 19 14 0.4665 11.0140 4.7171 20 1 1.6769 11.2003 5.5571 21 1 -0.2172 12.3198 4.5368 22 1 -0.4565 10.0604 5.3835 23 6 4.0973 4.7445 1.5901 24 6 3.5420 3.3208 1.4333 25 6 4.2357 0.2780 0.9603 26 6 4.2367 -0.7244 -0.2082 27 6 4.2238 0.4917 -1.1493 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 5.9142 3.5681 0.2759 32 1 2.5331 3.5709 -1.0767 33 1 3.9906 3.0876 -1.9775 34 1 3.7664 5.5850 -1.7243 35 1 5.2612 4.9431 -0.9991 36 1 3.6184 7.3770 2.4199 37 1 2.0557 6.5338 2.2959 38 1 1.1306 8.4369 1.0038 39 1 2.6931 9.2806 1.1275 40 1 0.2307 11.8657 2.0153 41 1 5.1787 4.7057 1.7210 42 1 3.6394 5.2237 2.4555 43 1 2.4534 3.3551 1.3892 44 1 3.8527 2.7142 2.2838 45 1 5.2339 0.5801 1.2772 46 1 3.5987 -0.0210 1.7927 47 1 3.3315 -1.3291 -0.2637 48 1 5.1484 -1.3182 -0.2745 49 1 3.5772 0.3651 -2.0176 50 1 5.2187 0.8525 -1.4103 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335355365.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:26:30 Heat of formation + Delta-G solvation = -174.093380 kcal Electronic energy + Delta-G solvation = -31577.730820 eV Core-core repulsion = 27376.812123 eV Total energy + Delta-G solvation = -4200.918698 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.65218 -41.18398 -39.95925 -38.39106 -37.55359 -36.05948 -35.63568 -33.41670 -32.45129 -32.06435 -29.23632 -28.43346 -27.45586 -26.78634 -25.06672 -24.35835 -23.50596 -22.85683 -21.40422 -20.58463 -19.81475 -18.98583 -18.42029 -18.09445 -17.47626 -17.27705 -17.06507 -16.76766 -16.64533 -16.41679 -16.27832 -15.82255 -15.42497 -15.20943 -14.78831 -14.46603 -14.40571 -14.29530 -14.21606 -13.59217 -13.56692 -13.27883 -13.25403 -13.21490 -13.06925 -12.83455 -12.78316 -12.65909 -12.48901 -12.30134 -12.22257 -11.96214 -11.83023 -11.71691 -11.62422 -11.45472 -11.35285 -11.31582 -10.89592 -10.79236 -10.59386 -10.58115 -9.65668 -8.19556 -6.34384 1.02797 1.40220 1.45414 1.53102 1.54059 1.64320 1.99699 2.41776 3.12999 3.13635 3.30590 3.41090 3.56861 3.62081 3.77626 3.90344 3.90982 4.01523 4.06735 4.23336 4.26006 4.28484 4.31287 4.41513 4.44807 4.49136 4.51225 4.67105 4.73969 4.74723 4.77413 4.85069 4.91152 4.93784 5.03042 5.05256 5.09062 5.12571 5.15622 5.20901 5.42374 5.44922 5.58435 5.59304 5.61501 5.82108 6.14856 6.33635 6.62401 6.73946 6.83469 7.22542 7.35980 8.93192 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.016795 B = 0.002710 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.810050 B =10327.827032 C =10950.492909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.349 6.349 3 C 0.483 3.517 4 O -0.525 6.525 5 C -0.084 4.084 6 C 0.179 3.821 7 O -0.545 6.545 8 C -0.159 4.159 9 C 0.107 3.893 10 N -0.611 5.611 11 C 0.510 3.490 12 O -0.591 6.591 13 C -0.115 4.115 14 C 0.045 3.955 15 C -0.544 4.544 16 H 0.076 0.924 17 C -0.008 4.008 18 N -0.939 5.939 19 Si 0.976 3.024 20 H -0.259 1.259 21 H -0.287 1.287 22 H -0.263 1.263 23 C 0.100 3.900 24 C -0.165 4.165 25 C -0.104 4.104 26 C -0.133 4.133 27 C -0.108 4.108 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.136 0.864 31 H 0.390 0.610 32 H 0.063 0.937 33 H 0.091 0.909 34 H 0.063 0.937 35 H 0.098 0.902 36 H 0.107 0.893 37 H 0.095 0.905 38 H -0.024 1.024 39 H -0.017 1.017 40 H 0.263 0.737 41 H 0.106 0.894 42 H 0.095 0.905 43 H 0.065 0.935 44 H 0.101 0.899 45 H 0.113 0.887 46 H 0.072 0.928 47 H 0.089 0.911 48 H 0.089 0.911 49 H 0.065 0.935 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.550 -31.243 -1.683 33.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.265 6.265 3 C 0.327 3.673 4 O -0.414 6.414 5 C -0.085 4.085 6 C 0.138 3.862 7 O -0.354 6.354 8 C -0.198 4.198 9 C -0.015 4.015 10 N -0.345 5.345 11 C 0.300 3.700 12 O -0.471 6.471 13 C -0.155 4.155 14 C 0.007 3.993 15 C -0.582 4.582 16 H 0.094 0.906 17 C -0.205 4.205 18 N -0.578 5.578 19 Si 0.799 3.201 20 H -0.184 1.184 21 H -0.213 1.213 22 H -0.188 1.188 23 C -0.022 4.022 24 C -0.204 4.204 25 C -0.141 4.141 26 C -0.170 4.170 27 C -0.145 4.145 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.154 0.846 31 H 0.241 0.759 32 H 0.082 0.918 33 H 0.110 0.890 34 H 0.082 0.918 35 H 0.116 0.884 36 H 0.125 0.875 37 H 0.113 0.887 38 H -0.005 1.005 39 H 0.002 0.998 40 H 0.072 0.928 41 H 0.124 0.876 42 H 0.113 0.887 43 H 0.084 0.916 44 H 0.120 0.880 45 H 0.131 0.869 46 H 0.090 0.910 47 H 0.107 0.893 48 H 0.108 0.892 49 H 0.084 0.916 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 10.013 -31.129 -2.334 32.783 hybrid contribution -1.178 1.822 0.193 2.178 sum 8.835 -29.307 -2.141 30.684 Atomic orbital electron populations 1.23545 0.75053 1.05750 1.02219 1.86482 1.24426 1.32007 1.83560 1.23178 0.91329 0.81349 0.71492 1.90696 1.67753 1.37047 1.45877 1.21557 0.86370 0.95739 1.04825 1.20191 0.81644 0.91250 0.93120 1.86367 1.16836 1.35769 1.96414 1.22636 1.02286 0.94840 1.00018 1.21611 1.00522 0.93985 0.85377 1.48248 1.57718 1.19908 1.08601 1.21385 0.75990 0.80611 0.91981 1.90632 1.56443 1.60279 1.39733 1.21625 1.02279 0.98441 0.93132 1.18670 0.93578 0.91409 0.95647 1.21667 1.37694 1.05346 0.93504 0.90554 1.26173 0.95748 0.97381 1.01197 1.70180 1.42120 1.15076 1.30470 0.85347 0.78949 0.77302 0.78485 1.18386 1.21261 1.18769 1.22111 1.02294 0.90969 0.86795 1.22765 1.02153 0.96264 0.99184 1.22911 1.01711 0.93311 0.96207 1.22926 1.03636 0.96076 0.94398 1.22895 1.01594 0.95257 0.94787 0.92364 0.92512 0.84615 0.75887 0.91810 0.89016 0.91829 0.88402 0.87488 0.88709 1.00530 0.99826 0.92811 0.87634 0.88680 0.91595 0.88035 0.86885 0.90976 0.89281 0.89241 0.91576 0.87014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 113.37 1.20 1.57 16 2 O -0.35 -6.04 8.67 -51.35 -0.45 -6.49 16 3 C 0.48 10.27 6.60 71.24 0.47 10.74 16 4 O -0.52 -15.08 11.84 21.98 0.26 -14.82 16 5 C -0.08 -1.37 0.46 -52.40 -0.02 -1.39 16 6 C 0.18 3.18 0.34 -10.77 0.00 3.18 16 7 O -0.54 -7.23 10.94 -148.98 -1.63 -8.86 16 8 C -0.16 -3.62 4.77 30.67 0.15 -3.47 16 9 C 0.11 2.76 6.00 86.36 0.52 3.28 16 10 N -0.61 -18.17 2.97 -818.07 -2.43 -20.59 16 11 C 0.51 21.45 7.70 87.66 0.67 22.13 16 12 O -0.59 -31.03 15.40 -3.03 -0.05 -31.07 16 13 C -0.12 -4.94 3.98 29.85 0.12 -4.82 16 14 C 0.04 2.60 4.26 29.84 0.13 2.72 16 15 C -0.54 -31.88 9.11 25.60 0.23 -31.65 16 16 H 0.08 4.04 7.74 -2.91 -0.02 4.02 16 17 C -0.01 -0.45 5.46 84.65 0.46 0.01 16 18 N -0.94 -61.01 13.29 21.44 0.28 -60.73 16 19 Si 0.98 45.08 29.54 68.60 2.03 47.11 16 20 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 21 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 22 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 23 C 0.10 2.07 5.94 86.51 0.51 2.59 16 24 C -0.17 -3.28 4.75 30.82 0.15 -3.14 16 25 C -0.10 -1.26 6.65 31.18 0.21 -1.05 16 26 C -0.13 -1.38 7.64 31.18 0.24 -1.14 16 27 C -0.11 -1.39 6.51 31.12 0.20 -1.19 16 28 H 0.06 0.89 8.13 -2.39 -0.02 0.87 16 29 H 0.06 0.87 8.13 -2.38 -0.02 0.85 16 30 H 0.14 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.39 3.87 5.83 -74.06 -0.43 3.44 16 32 H 0.06 1.93 5.85 -2.38 -0.01 1.91 16 33 H 0.09 1.77 7.70 -2.39 -0.02 1.75 16 34 H 0.06 2.08 7.00 -2.39 -0.02 2.06 16 35 H 0.10 1.82 7.03 -2.39 -0.02 1.80 16 36 H 0.11 3.95 7.93 -2.39 -0.02 3.93 16 37 H 0.09 3.74 7.70 -2.39 -0.02 3.72 16 38 H -0.02 -1.58 8.10 -2.38 -0.02 -1.60 16 39 H -0.02 -1.09 8.10 -2.38 -0.02 -1.11 16 40 H 0.26 16.01 8.31 -92.71 -0.77 15.24 16 41 H 0.11 1.44 7.02 -2.39 -0.02 1.42 16 42 H 0.09 2.06 5.93 -2.39 -0.01 2.04 16 43 H 0.07 1.77 5.88 -2.39 -0.01 1.76 16 44 H 0.10 1.57 7.87 -2.39 -0.02 1.55 16 45 H 0.11 1.24 7.27 -2.39 -0.02 1.22 16 46 H 0.07 0.87 8.09 -2.39 -0.02 0.85 16 47 H 0.09 0.98 6.86 -2.38 -0.02 0.96 16 48 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 49 H 0.07 0.89 8.09 -2.38 -0.02 0.88 16 50 H 0.11 1.33 7.44 -2.39 -0.02 1.32 16 Total: -1.00 -84.16 383.00 3.77 -80.39 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: 0.52 Total: 16.70 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: 5.23 Total: -1.65 kcal Atomic # 7 Polarization: -79.18 SS G_CDS: -2.14 Total: -81.32 kcal Atomic # 8 Polarization: -59.38 SS G_CDS: -1.86 Total: -61.24 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -84.16 3.77 -80.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335355365.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.704 kcal (2) G-P(sol) polarization free energy of solvation -84.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds