Wall clock time and date at job start Tue Mar 31 2020 23:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34225 * 116.99726 * 2 1 4 4 O 1.20827 * 120.00481 * 0.02562 * 3 2 1 5 5 C 1.50706 * 119.99835 * 179.97438 * 3 2 1 6 6 C 1.53837 * 113.60645 * 279.17244 * 5 3 2 7 7 C 1.53595 * 86.91312 * 220.30087 * 6 5 3 8 8 C 1.53395 * 87.47678 * 25.16648 * 7 6 5 9 9 C 1.52807 * 113.36144 * 270.61413 * 7 6 5 10 10 C 1.53322 * 108.91234 * 282.91090 * 9 7 6 11 11 H 1.08991 * 109.55328 * 65.05741 * 10 9 7 12 12 N 1.46500 * 109.55378 * 185.26544 * 10 9 7 13 13 C 1.34772 * 119.99958 * 204.99793 * 12 10 9 14 14 O 1.21285 * 119.99967 * 0.02562 * 13 12 10 15 15 C 1.50696 * 120.00262 * 180.02562 * 13 12 10 16 16 C 1.53001 * 109.47376 * 180.02562 * 15 13 12 17 17 C 1.53003 * 109.47102 * 180.02562 * 16 15 13 18 18 C 1.50702 * 109.46979 * 180.02562 * 17 16 15 19 19 H 1.08004 * 119.99948 * 359.97438 * 18 17 16 20 20 C 1.37878 * 119.99855 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99997 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99644 * 179.97438 * 20 18 17 23 23 H 1.48490 * 109.47420 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46570 * 120.00103 * 22 20 18 25 25 H 1.48493 * 109.46949 * 239.99642 * 22 20 18 26 26 C 1.53161 * 108.96842 * 305.11262 * 10 9 7 27 27 C 1.53036 * 109.41551 * 58.61853 * 26 10 9 28 28 O 1.42576 * 113.60680 * 139.91251 * 7 6 5 29 29 H 1.09004 * 109.47272 * 59.99735 * 1 2 3 30 30 H 1.09005 * 109.47104 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47690 * 299.99670 * 1 2 3 32 32 H 1.09003 * 112.83568 * 50.33912 * 5 3 2 33 33 H 1.09001 * 113.63241 * 334.80002 * 6 5 3 34 34 H 1.09001 * 113.63448 * 105.75045 * 6 5 3 35 35 H 1.09002 * 113.62595 * 220.31416 * 8 7 6 36 36 H 1.09002 * 113.63135 * 89.36192 * 8 7 6 37 37 H 1.08994 * 109.56792 * 42.73909 * 9 7 6 38 38 H 1.09006 * 109.56333 * 162.96656 * 9 7 6 39 39 H 0.97002 * 119.99778 * 25.00232 * 12 10 9 40 40 H 1.09000 * 109.47486 * 300.00197 * 15 13 12 41 41 H 1.09005 * 109.47239 * 60.00073 * 15 13 12 42 42 H 1.09002 * 109.47126 * 299.99978 * 16 15 13 43 43 H 1.08999 * 109.47247 * 60.00063 * 16 15 13 44 44 H 1.09002 * 109.46981 * 299.99906 * 17 16 15 45 45 H 1.08999 * 109.47150 * 59.99842 * 17 16 15 46 46 H 0.96999 * 119.99913 * 180.02562 * 21 20 18 47 47 H 1.09000 * 109.47793 * 178.60649 * 26 10 9 48 48 H 1.09003 * 109.47856 * 298.63638 * 26 10 9 49 49 H 1.09006 * 109.47353 * 60.67057 * 27 26 10 50 50 H 1.08997 * 109.47789 * 180.68523 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.1927 1.0830 1.3925 7 6 5.1743 2.2019 1.0135 8 6 4.1077 2.7144 0.0375 9 6 6.4376 1.6912 0.3220 10 6 7.3733 1.0898 1.3772 11 1 6.9068 0.2096 1.8192 12 7 8.6410 0.7098 0.7490 13 6 9.4026 -0.2566 1.2990 14 8 9.0382 -0.8119 2.3138 15 6 10.7069 -0.6472 0.6531 16 6 11.3684 -1.7583 1.4709 17 6 12.6930 -2.1544 0.8154 18 6 13.3442 -3.2493 1.6206 19 1 12.8618 -3.6247 2.5110 20 6 14.5558 -3.7717 1.2205 21 7 15.1435 -3.3141 0.1365 22 14 15.3634 -5.1283 2.2190 23 1 14.5059 -5.4628 3.3842 24 1 15.5344 -6.3337 1.3686 25 1 16.6915 -4.6674 2.6971 26 6 7.6337 2.1355 2.4656 27 6 6.3037 2.5584 3.0934 28 8 5.4519 3.1041 2.0821 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 4.0226 0.6566 -0.7725 33 1 3.5247 1.3468 2.2124 34 1 4.6676 0.1113 1.5278 35 1 4.5142 3.0529 -0.9156 36 1 3.4162 3.4301 0.4823 37 1 6.1707 0.9265 -0.4074 38 1 6.9373 2.5183 -0.1826 39 1 8.9323 1.1537 -0.0628 40 1 10.5184 -1.0047 -0.3592 41 1 11.3675 0.2191 0.6154 42 1 11.5569 -1.4013 2.4833 43 1 10.7078 -2.6245 1.5082 44 1 12.5048 -2.5114 -0.1972 45 1 13.3534 -1.2881 0.7784 46 1 15.9957 -3.6819 -0.1451 47 1 8.2786 1.7082 3.2334 48 1 8.1205 3.0055 2.0247 49 1 5.8225 1.6905 3.5444 50 1 6.4867 3.3116 3.8598 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338273816.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:26:21 Heat of formation + Delta-G solvation = -168.640879 kcal Electronic energy + Delta-G solvation = -29368.511115 eV Core-core repulsion = 25167.828856 eV Total energy + Delta-G solvation = -4200.682259 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.69031 -40.43528 -39.36308 -37.31127 -36.43928 -35.43483 -34.16488 -32.23958 -31.51661 -30.32639 -28.45882 -27.82475 -26.45330 -25.53162 -24.55799 -23.62629 -22.09095 -20.87479 -20.57052 -19.85823 -19.00911 -18.37954 -17.42786 -16.97995 -16.80917 -16.57991 -16.15996 -15.97920 -15.55853 -15.39311 -15.21245 -14.85165 -14.42449 -14.24407 -13.86025 -13.81037 -13.47756 -13.39217 -13.13551 -12.87924 -12.67095 -12.30271 -12.28413 -12.00877 -11.84252 -11.78347 -11.74252 -11.37836 -11.34433 -11.25101 -11.11035 -10.85054 -10.82802 -10.62996 -10.54440 -10.51228 -9.98563 -9.69256 -9.65458 -9.26639 -9.09066 -9.00536 -8.33028 -5.98458 -3.99758 1.72293 2.23089 2.87077 3.13200 3.33051 3.33607 3.40430 3.46148 3.76902 3.88950 4.04508 4.20338 4.46682 4.48683 4.51106 4.59398 4.65223 4.67183 4.74296 4.81182 4.95329 5.05968 5.08495 5.14856 5.20756 5.23028 5.29843 5.37738 5.38840 5.45152 5.47914 5.64136 5.68663 5.70299 5.70849 5.79658 5.92857 5.94707 6.24574 6.43756 6.71388 6.85840 6.91931 7.15157 7.29360 7.55053 7.70472 7.82803 8.02290 8.41012 8.46410 9.07585 9.64298 11.13034 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.018751 B = 0.001780 C = 0.001699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.908508 B =15723.221859 C =16473.831314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.356 6.356 3 C 0.474 3.526 4 O -0.504 6.504 5 C -0.109 4.109 6 C -0.145 4.145 7 C 0.100 3.900 8 C -0.098 4.098 9 C -0.135 4.135 10 C 0.145 3.855 11 H 0.090 0.910 12 N -0.736 5.736 13 C 0.514 3.486 14 O -0.537 6.537 15 C -0.139 4.139 16 C -0.095 4.095 17 C 0.019 3.981 18 C -0.517 4.517 19 H 0.056 0.944 20 C 0.055 3.945 21 N -0.897 5.897 22 Si 0.892 3.108 23 H -0.272 1.272 24 H -0.284 1.284 25 H -0.284 1.284 26 C -0.168 4.168 27 C 0.063 3.937 28 O -0.361 6.361 29 H 0.063 0.937 30 H 0.102 0.898 31 H 0.063 0.937 32 H 0.130 0.870 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.108 0.892 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.400 0.600 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.016 0.984 45 H 0.016 0.984 46 H 0.259 0.741 47 H 0.082 0.918 48 H 0.074 0.926 49 H 0.055 0.945 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.477 13.871 -2.333 30.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.273 6.273 3 C 0.316 3.684 4 O -0.392 6.392 5 C -0.128 4.128 6 C -0.183 4.183 7 C 0.059 3.941 8 C -0.135 4.135 9 C -0.173 4.173 10 C 0.040 3.960 11 H 0.108 0.892 12 N -0.389 5.389 13 C 0.302 3.698 14 O -0.412 6.412 15 C -0.179 4.179 16 C -0.133 4.133 17 C -0.018 4.018 18 C -0.555 4.555 19 H 0.075 0.925 20 C -0.146 4.146 21 N -0.537 5.537 22 Si 0.720 3.280 23 H -0.197 1.197 24 H -0.211 1.211 25 H -0.210 1.210 26 C -0.207 4.207 27 C -0.014 4.014 28 O -0.279 6.279 29 H 0.082 0.918 30 H 0.121 0.879 31 H 0.082 0.918 32 H 0.148 0.852 33 H 0.115 0.885 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.127 0.873 37 H 0.104 0.896 38 H 0.103 0.897 39 H 0.234 0.766 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.034 0.966 45 H 0.034 0.966 46 H 0.069 0.931 47 H 0.101 0.899 48 H 0.093 0.907 49 H 0.073 0.927 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -27.886 13.898 -1.679 31.203 hybrid contribution 0.588 -0.750 0.016 0.953 sum -27.298 13.148 -1.663 30.345 Atomic orbital electron populations 1.23304 0.76177 1.03896 1.02594 1.86534 1.23549 1.33350 1.83844 1.23479 0.91567 0.81352 0.71968 1.90674 1.66970 1.36416 1.45113 1.22358 0.87597 1.01174 1.01714 1.23616 0.98545 1.01024 0.95089 1.22431 0.92560 0.90351 0.88731 1.23012 0.96342 0.94588 0.99573 1.22189 0.95044 1.01757 0.98284 1.20862 0.84658 0.97617 0.92868 0.89190 1.46188 1.22028 1.40441 1.30229 1.21293 0.86142 0.77906 0.84423 1.90675 1.72698 1.53273 1.24587 1.21855 0.92685 1.02061 1.01290 1.21442 0.98357 0.95141 0.98327 1.19144 0.90380 0.96363 0.95885 1.21311 1.04630 1.19270 1.10328 0.92529 1.25026 0.97283 0.97065 0.95196 1.69972 1.17142 1.42804 1.23791 0.86538 0.79293 0.81922 0.80294 1.19693 1.21053 1.21044 1.22603 0.98663 0.99658 0.99740 1.22577 0.89275 0.99382 0.90121 1.87972 1.68002 1.39371 1.32579 0.91824 0.87924 0.91828 0.85183 0.88468 0.89229 0.89294 0.87319 0.89572 0.89677 0.76621 0.89352 0.89353 0.92741 0.92720 0.96601 0.96600 0.93132 0.89894 0.90715 0.92682 0.88374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.56 101.05 1.07 1.26 16 2 O -0.36 -2.95 10.57 -39.24 -0.41 -3.36 16 3 C 0.47 4.19 7.48 36.01 0.27 4.46 16 4 O -0.50 -5.73 15.66 -18.75 -0.29 -6.02 16 5 C -0.11 -0.73 3.90 -90.90 -0.35 -1.08 16 6 C -0.15 -1.03 6.46 -25.99 -0.17 -1.20 16 7 C 0.10 0.74 1.16 -90.21 -0.10 0.64 16 8 C -0.10 -0.68 6.82 -26.09 -0.18 -0.86 16 9 C -0.13 -0.91 4.65 -26.66 -0.12 -1.04 16 10 C 0.15 1.37 2.46 -67.68 -0.17 1.20 16 11 H 0.09 1.01 7.05 -51.93 -0.37 0.65 16 12 N -0.74 -7.71 5.08 -53.57 -0.27 -7.98 16 13 C 0.51 7.70 7.80 -10.99 -0.09 7.61 16 14 O -0.54 -10.13 15.64 5.55 0.09 -10.04 16 15 C -0.14 -2.20 5.70 -27.88 -0.16 -2.36 16 16 C -0.09 -2.00 4.44 -26.73 -0.12 -2.12 16 17 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 18 C -0.52 -14.89 9.11 -34.44 -0.31 -15.20 16 19 H 0.06 1.61 7.74 -52.48 -0.41 1.21 16 20 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 21 N -0.90 -26.94 13.29 55.43 0.74 -26.21 16 22 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 23 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 25 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 26 C -0.17 -1.58 5.67 -26.63 -0.15 -1.73 16 27 C 0.06 0.53 6.74 37.18 0.25 0.78 16 28 O -0.36 -3.33 10.53 -35.23 -0.37 -3.70 16 29 H 0.06 0.35 8.13 -51.93 -0.42 -0.08 16 30 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.36 8.13 -51.93 -0.42 -0.06 16 32 H 0.13 0.63 7.62 -51.93 -0.40 0.23 16 33 H 0.10 0.74 8.09 -51.93 -0.42 0.32 16 34 H 0.09 0.61 7.56 -51.93 -0.39 0.22 16 35 H 0.09 0.48 8.09 -51.93 -0.42 0.06 16 36 H 0.11 0.92 7.45 -51.93 -0.39 0.54 16 37 H 0.09 0.49 7.31 -51.93 -0.38 0.11 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.40 3.10 8.61 -40.82 -0.35 2.74 16 40 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.05 1.20 8.10 -51.93 -0.42 0.78 16 43 H 0.05 1.21 8.10 -51.93 -0.42 0.78 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 47 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 48 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 49 H 0.05 0.45 7.84 -51.93 -0.41 0.04 16 50 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 406.40 15.07 6.12 6.12 Total: -1.00 -35.44 406.40 -8.55 -43.99 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -8.55 Total: -1.93 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: -0.57 Total: -7.78 kcal Atomic # 7 Polarization: -34.65 SS G_CDS: 0.46 Total: -34.19 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.99 Total: -23.12 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -35.44 -8.55 -43.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338273816.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.651 kcal (2) G-P(sol) polarization free energy of solvation -35.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds