Wall clock time and date at job start Tue Mar 31 2020 23:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34225 * 116.99726 * 2 1 4 4 O 1.20827 * 120.00481 * 0.02562 * 3 2 1 5 5 C 1.50706 * 119.99835 * 179.97438 * 3 2 1 6 6 C 1.53837 * 113.60645 * 279.17244 * 5 3 2 7 7 C 1.53595 * 86.91312 * 220.30087 * 6 5 3 8 8 C 1.53395 * 87.47678 * 25.16648 * 7 6 5 9 9 C 1.52807 * 113.36144 * 270.61413 * 7 6 5 10 10 C 1.53322 * 108.91234 * 282.91090 * 9 7 6 11 11 H 1.08991 * 109.55328 * 65.05741 * 10 9 7 12 12 N 1.46500 * 109.55378 * 185.26544 * 10 9 7 13 13 C 1.34772 * 119.99958 * 204.99793 * 12 10 9 14 14 O 1.21285 * 119.99967 * 0.02562 * 13 12 10 15 15 C 1.50696 * 120.00262 * 180.02562 * 13 12 10 16 16 C 1.53001 * 109.47376 * 180.02562 * 15 13 12 17 17 C 1.53003 * 109.47102 * 180.02562 * 16 15 13 18 18 C 1.50702 * 109.46979 * 180.02562 * 17 16 15 19 19 H 1.08004 * 119.99948 * 359.97438 * 18 17 16 20 20 C 1.37878 * 119.99855 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99997 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99644 * 179.97438 * 20 18 17 23 23 H 1.48490 * 109.47420 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46570 * 120.00103 * 22 20 18 25 25 H 1.48493 * 109.46949 * 239.99642 * 22 20 18 26 26 C 1.53161 * 108.96842 * 305.11262 * 10 9 7 27 27 C 1.53036 * 109.41551 * 58.61853 * 26 10 9 28 28 O 1.42576 * 113.60680 * 139.91251 * 7 6 5 29 29 H 1.09004 * 109.47272 * 59.99735 * 1 2 3 30 30 H 1.09005 * 109.47104 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47690 * 299.99670 * 1 2 3 32 32 H 1.09003 * 112.83568 * 50.33912 * 5 3 2 33 33 H 1.09001 * 113.63241 * 334.80002 * 6 5 3 34 34 H 1.09001 * 113.63448 * 105.75045 * 6 5 3 35 35 H 1.09002 * 113.62595 * 220.31416 * 8 7 6 36 36 H 1.09002 * 113.63135 * 89.36192 * 8 7 6 37 37 H 1.08994 * 109.56792 * 42.73909 * 9 7 6 38 38 H 1.09006 * 109.56333 * 162.96656 * 9 7 6 39 39 H 0.97002 * 119.99778 * 25.00232 * 12 10 9 40 40 H 1.09000 * 109.47486 * 300.00197 * 15 13 12 41 41 H 1.09005 * 109.47239 * 60.00073 * 15 13 12 42 42 H 1.09002 * 109.47126 * 299.99978 * 16 15 13 43 43 H 1.08999 * 109.47247 * 60.00063 * 16 15 13 44 44 H 1.09002 * 109.46981 * 299.99906 * 17 16 15 45 45 H 1.08999 * 109.47150 * 59.99842 * 17 16 15 46 46 H 0.96999 * 119.99913 * 180.02562 * 21 20 18 47 47 H 1.09000 * 109.47793 * 178.60649 * 26 10 9 48 48 H 1.09003 * 109.47856 * 298.63638 * 26 10 9 49 49 H 1.09006 * 109.47353 * 60.67057 * 27 26 10 50 50 H 1.08997 * 109.47789 * 180.68523 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.1927 1.0830 1.3925 7 6 5.1743 2.2019 1.0135 8 6 4.1077 2.7144 0.0375 9 6 6.4376 1.6912 0.3220 10 6 7.3733 1.0898 1.3772 11 1 6.9068 0.2096 1.8192 12 7 8.6410 0.7098 0.7490 13 6 9.4026 -0.2566 1.2990 14 8 9.0382 -0.8119 2.3138 15 6 10.7069 -0.6472 0.6531 16 6 11.3684 -1.7583 1.4709 17 6 12.6930 -2.1544 0.8154 18 6 13.3442 -3.2493 1.6206 19 1 12.8618 -3.6247 2.5110 20 6 14.5558 -3.7717 1.2205 21 7 15.1435 -3.3141 0.1365 22 14 15.3634 -5.1283 2.2190 23 1 14.5059 -5.4628 3.3842 24 1 15.5344 -6.3337 1.3686 25 1 16.6915 -4.6674 2.6971 26 6 7.6337 2.1355 2.4656 27 6 6.3037 2.5584 3.0934 28 8 5.4519 3.1041 2.0821 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 4.0226 0.6566 -0.7725 33 1 3.5247 1.3468 2.2124 34 1 4.6676 0.1113 1.5278 35 1 4.5142 3.0529 -0.9156 36 1 3.4162 3.4301 0.4823 37 1 6.1707 0.9265 -0.4074 38 1 6.9373 2.5183 -0.1826 39 1 8.9323 1.1537 -0.0628 40 1 10.5184 -1.0047 -0.3592 41 1 11.3675 0.2191 0.6154 42 1 11.5569 -1.4013 2.4833 43 1 10.7078 -2.6245 1.5082 44 1 12.5048 -2.5114 -0.1972 45 1 13.3534 -1.2881 0.7784 46 1 15.9957 -3.6819 -0.1451 47 1 8.2786 1.7082 3.2334 48 1 8.1205 3.0055 2.0247 49 1 5.8225 1.6905 3.5444 50 1 6.4867 3.3116 3.8598 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338273816.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:26:20 Heat of formation + Delta-G solvation = -191.557810 kcal Electronic energy + Delta-G solvation = -29369.504868 eV Core-core repulsion = 25167.828856 eV Total energy + Delta-G solvation = -4201.676012 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.32397 -41.20140 -40.40586 -37.97976 -37.14929 -36.43253 -35.95874 -34.04159 -32.62037 -30.96312 -29.64667 -28.89672 -27.00403 -26.38096 -25.73529 -24.80716 -23.04100 -22.06841 -21.44339 -21.22958 -19.67722 -19.04495 -18.56577 -18.06718 -17.71783 -17.53869 -17.31045 -16.83126 -16.56845 -16.47454 -16.23856 -15.88810 -15.62657 -15.16995 -14.81174 -14.59036 -14.49380 -14.30473 -14.18855 -14.05929 -13.70760 -13.48463 -13.18122 -13.10596 -12.90702 -12.65403 -12.61911 -12.50849 -12.42184 -12.36517 -12.32930 -12.00523 -11.85046 -11.76124 -11.54649 -11.53284 -11.44890 -11.26990 -11.20825 -10.76905 -10.53752 -10.44789 -10.05731 -8.19617 -6.29184 1.05936 1.39683 1.40256 1.53805 1.68645 1.69608 2.17237 2.42500 2.72660 3.13414 3.21567 3.31506 3.46518 3.61890 3.80790 3.86025 3.92595 4.02364 4.06813 4.17003 4.25861 4.27026 4.29673 4.30632 4.39258 4.44089 4.59167 4.63369 4.68859 4.72029 4.78773 4.83342 4.84490 4.91843 5.00181 5.04518 5.05874 5.13753 5.14725 5.21066 5.23501 5.32949 5.51467 5.57317 5.77632 5.88707 6.22833 6.28857 6.60767 6.65083 6.86666 7.32556 7.39527 8.91922 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.018751 B = 0.001780 C = 0.001699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.908508 B =15723.221859 C =16473.831314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.364 6.364 3 C 0.472 3.528 4 O -0.536 6.536 5 C -0.103 4.103 6 C -0.145 4.145 7 C 0.098 3.902 8 C -0.095 4.095 9 C -0.125 4.125 10 C 0.143 3.857 11 H 0.072 0.928 12 N -0.713 5.713 13 C 0.518 3.482 14 O -0.582 6.582 15 C -0.131 4.131 16 C -0.082 4.082 17 C 0.024 3.976 18 C -0.546 4.546 19 H 0.050 0.950 20 C 0.003 3.997 21 N -0.928 5.928 22 Si 0.961 3.039 23 H -0.268 1.268 24 H -0.275 1.275 25 H -0.276 1.276 26 C -0.163 4.163 27 C 0.066 3.934 28 O -0.374 6.374 29 H 0.064 0.936 30 H 0.129 0.871 31 H 0.060 0.940 32 H 0.156 0.844 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.109 0.891 36 H 0.089 0.911 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.417 0.583 40 H 0.109 0.891 41 H 0.107 0.893 42 H 0.038 0.962 43 H 0.040 0.960 44 H 0.002 0.998 45 H 0.001 0.999 46 H 0.264 0.736 47 H 0.060 0.940 48 H 0.082 0.918 49 H 0.053 0.947 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.830 13.995 -3.297 31.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C 0.317 3.683 4 O -0.425 6.425 5 C -0.121 4.121 6 C -0.183 4.183 7 C 0.057 3.943 8 C -0.132 4.132 9 C -0.163 4.163 10 C 0.038 3.962 11 H 0.090 0.910 12 N -0.366 5.366 13 C 0.306 3.694 14 O -0.462 6.462 15 C -0.171 4.171 16 C -0.120 4.120 17 C -0.013 4.013 18 C -0.584 4.584 19 H 0.069 0.931 20 C -0.195 4.195 21 N -0.569 5.569 22 Si 0.786 3.214 23 H -0.193 1.193 24 H -0.201 1.201 25 H -0.201 1.201 26 C -0.202 4.202 27 C -0.011 4.011 28 O -0.293 6.293 29 H 0.083 0.917 30 H 0.147 0.853 31 H 0.079 0.921 32 H 0.174 0.826 33 H 0.105 0.895 34 H 0.111 0.889 35 H 0.128 0.872 36 H 0.108 0.892 37 H 0.124 0.876 38 H 0.120 0.880 39 H 0.255 0.745 40 H 0.127 0.873 41 H 0.125 0.875 42 H 0.057 0.943 43 H 0.059 0.941 44 H 0.020 0.980 45 H 0.019 0.981 46 H 0.073 0.927 47 H 0.078 0.922 48 H 0.100 0.900 49 H 0.071 0.929 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -28.258 14.051 -2.678 31.671 hybrid contribution 0.639 -0.770 0.313 1.049 sum -27.618 13.280 -2.365 30.737 Atomic orbital electron populations 1.23547 0.74956 1.05649 1.02520 1.86529 1.24902 1.33066 1.83486 1.23912 0.92396 0.81039 0.70966 1.90660 1.67826 1.37365 1.46688 1.22474 0.86211 1.01455 1.02005 1.23593 0.98424 1.01126 0.95183 1.22547 0.92963 0.90234 0.88519 1.22976 0.95676 0.94367 1.00173 1.22164 0.93918 1.02661 0.97560 1.20948 0.84286 0.97130 0.93803 0.90953 1.45933 1.21656 1.38748 1.30236 1.21015 0.86073 0.78469 0.83802 1.90668 1.73658 1.55243 1.26588 1.21683 0.93350 1.00861 1.01215 1.21152 0.96278 0.96593 0.98021 1.19040 0.92158 0.94980 0.95105 1.21727 1.05461 1.20510 1.10710 0.93123 1.25899 0.97839 0.99495 0.96304 1.70069 1.17649 1.44058 1.25098 0.85460 0.78297 0.78875 0.78802 1.19265 1.20090 1.20132 1.22535 0.98841 0.99656 0.99187 1.22574 0.88648 0.99667 0.90222 1.87965 1.68052 1.40107 1.33130 0.91721 0.85317 0.92142 0.82630 0.89513 0.88929 0.87242 0.89198 0.87631 0.88046 0.74532 0.87254 0.87506 0.94276 0.94107 0.97967 0.98073 0.92700 0.92160 0.89962 0.92875 0.87388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 113.37 1.20 1.47 16 2 O -0.36 -5.64 10.57 -51.37 -0.54 -6.18 16 3 C 0.47 7.97 7.48 71.24 0.53 8.50 16 4 O -0.54 -12.10 15.66 21.96 0.34 -11.75 16 5 C -0.10 -1.18 3.90 -10.97 -0.04 -1.22 16 6 C -0.15 -1.89 6.46 31.08 0.20 -1.69 16 7 C 0.10 1.27 1.16 -10.53 -0.01 1.25 16 8 C -0.09 -1.13 6.82 31.01 0.21 -0.92 16 9 C -0.13 -1.32 4.65 30.64 0.14 -1.18 16 10 C 0.14 2.45 2.46 45.15 0.11 2.56 16 11 H 0.07 1.56 7.05 -2.39 -0.02 1.54 16 12 N -0.71 -13.32 5.08 -441.78 -2.25 -15.57 16 13 C 0.52 14.93 7.80 87.66 0.68 15.62 16 14 O -0.58 -22.06 15.64 -3.05 -0.05 -22.11 16 15 C -0.13 -3.99 5.70 29.85 0.17 -3.82 16 16 C -0.08 -3.53 4.44 30.60 0.14 -3.39 16 17 C 0.02 1.27 4.97 29.85 0.15 1.42 16 18 C -0.55 -31.90 9.11 25.60 0.23 -31.67 16 19 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 20 C 0.00 0.15 5.46 84.65 0.46 0.61 16 21 N -0.93 -55.92 13.29 21.45 0.28 -55.63 16 22 Si 0.96 44.96 29.54 68.60 2.03 46.98 16 23 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 24 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 25 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 26 C -0.16 -2.90 5.67 30.66 0.17 -2.72 16 27 C 0.07 1.05 6.74 71.99 0.49 1.54 16 28 O -0.37 -6.41 10.53 -148.98 -1.57 -7.98 16 29 H 0.06 0.66 8.13 -2.39 -0.02 0.64 16 30 H 0.13 0.61 8.14 -2.38 -0.02 0.59 16 31 H 0.06 0.67 8.13 -2.39 -0.02 0.65 16 32 H 0.16 0.98 7.62 -2.39 -0.02 0.97 16 33 H 0.09 1.31 8.09 -2.39 -0.02 1.29 16 34 H 0.09 1.15 7.56 -2.39 -0.02 1.13 16 35 H 0.11 0.86 8.09 -2.39 -0.02 0.84 16 36 H 0.09 1.47 7.45 -2.39 -0.02 1.45 16 37 H 0.11 0.76 7.31 -2.39 -0.02 0.74 16 38 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 39 H 0.42 5.01 8.61 -92.71 -0.80 4.21 16 40 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 41 H 0.11 2.86 8.14 -2.38 -0.02 2.85 16 42 H 0.04 1.76 8.10 -2.39 -0.02 1.74 16 43 H 0.04 1.83 8.10 -2.39 -0.02 1.81 16 44 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 45 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 46 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 47 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 48 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 49 H 0.05 0.86 7.84 -2.38 -0.02 0.84 16 50 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -77.95 406.40 3.22 -74.73 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: 0.13 Total: 11.15 kcal Atomic # 6 Polarization: -18.47 SS G_CDS: 4.83 Total: -13.64 kcal Atomic # 7 Polarization: -69.24 SS G_CDS: -1.96 Total: -71.20 kcal Atomic # 8 Polarization: -46.21 SS G_CDS: -1.81 Total: -48.03 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.98 kcal Total: -77.95 3.22 -74.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338273816.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.824 kcal (2) G-P(sol) polarization free energy of solvation -77.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds