Wall clock time and date at job start Tue Mar 31 2020 22:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42900 * 114.00356 * 2 1 4 4 C 1.52994 * 109.47549 * 180.02562 * 3 2 1 5 5 C 1.50701 * 109.47105 * 180.02562 * 4 3 2 6 6 N 1.29028 * 124.91455 * 90.02655 * 5 4 3 7 7 C 1.31787 * 117.12538 * 179.97438 * 6 5 4 8 8 C 1.33642 * 114.49895 * 0.02562 * 7 6 5 9 9 C 1.50696 * 126.03804 * 180.02562 * 8 7 6 10 10 N 1.46900 * 109.47441 * 89.99176 * 9 8 7 11 11 C 1.46896 * 111.00125 * 294.30588 * 10 9 8 12 12 C 1.53236 * 109.33948 * 172.74668 * 11 10 9 13 13 H 1.09006 * 109.62608 * 294.11784 * 12 11 10 14 14 C 1.53008 * 109.62960 * 173.53676 * 12 11 10 15 15 N 1.47081 * 108.52625 * 53.82625 * 12 11 10 16 16 C 1.36941 * 120.88192 * 128.83328 * 15 12 11 17 17 H 1.07993 * 119.99886 * 331.85145 * 16 15 12 18 18 C 1.38810 * 119.99612 * 151.84741 * 16 15 12 19 19 N 1.31621 * 120.00365 * 342.75574 * 18 16 15 20 20 Si 1.86800 * 119.99913 * 162.75864 * 18 16 15 21 21 H 1.48501 * 109.47030 * 59.99845 * 20 18 16 22 22 H 1.48502 * 109.47171 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47054 * 299.99818 * 20 18 16 24 24 C 1.47081 * 118.23366 * 308.82125 * 15 12 11 25 25 H 1.09002 * 109.62551 * 170.89217 * 24 15 12 26 26 C 1.53001 * 109.62592 * 291.46524 * 24 15 12 27 27 C 1.46897 * 110.99999 * 169.99881 * 10 9 8 28 28 S 1.70983 * 124.91877 * 269.72368 * 5 4 3 29 29 H 1.08999 * 109.47019 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46921 * 299.99407 * 1 2 3 31 31 H 1.08999 * 109.47555 * 59.99454 * 1 2 3 32 32 H 1.09004 * 109.46747 * 60.00204 * 3 2 1 33 33 H 1.09002 * 109.47310 * 300.01023 * 3 2 1 34 34 H 1.09001 * 109.47125 * 60.00809 * 4 3 2 35 35 H 1.08998 * 109.47210 * 299.99966 * 4 3 2 36 36 H 1.07998 * 122.74694 * 180.02562 * 7 6 5 37 37 H 1.09000 * 109.47092 * 210.00010 * 9 8 7 38 38 H 1.09002 * 109.46850 * 329.99070 * 9 8 7 39 39 H 1.09004 * 109.49449 * 292.70449 * 11 10 9 40 40 H 1.08996 * 109.49553 * 52.78144 * 11 10 9 41 41 H 1.08994 * 109.47195 * 296.59609 * 14 12 11 42 42 H 1.09003 * 109.46634 * 56.59574 * 14 12 11 43 43 H 1.08996 * 109.47110 * 176.59143 * 14 12 11 44 44 H 0.96997 * 120.00283 * 175.08837 * 19 18 16 45 45 H 1.09000 * 109.46690 * 179.02629 * 26 24 15 46 46 H 1.08996 * 109.47284 * 299.03669 * 26 24 15 47 47 H 1.09000 * 109.46610 * 59.03803 * 26 24 15 48 48 H 1.08996 * 109.49410 * 307.22005 * 27 10 9 49 49 H 1.09002 * 109.49216 * 67.29440 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1484 2.5614 0.0000 6 7 4.4496 3.2352 1.0583 7 6 4.9810 4.4279 0.8803 8 6 5.1362 4.7800 -0.3995 9 6 5.7151 6.0791 -0.8977 10 7 7.1680 5.9370 -1.0613 11 6 7.8258 5.7273 0.2353 12 6 9.3062 5.4044 0.0069 13 1 9.3972 4.4464 -0.5053 14 6 10.0325 5.3434 1.3523 15 7 9.8935 6.4665 -0.8239 16 6 11.0453 7.1014 -0.4423 17 1 11.2925 7.1879 0.6054 18 6 11.8950 7.6336 -1.4023 19 7 11.7922 7.2507 -2.6574 20 14 13.1846 8.8933 -0.9129 21 1 14.1041 8.2968 0.0891 22 1 13.9576 9.3024 -2.1131 23 1 12.5170 10.0828 -0.3257 24 6 9.2110 6.8284 -2.0754 25 1 9.6654 7.7266 -2.4938 26 6 9.3260 5.6761 -3.0753 27 6 7.7343 7.0954 -1.7651 28 16 4.5521 3.4536 -1.4016 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.6886 1.8463 0.8900 33 1 1.6885 1.8465 -0.8899 34 1 3.8567 0.6440 -0.8909 35 1 3.8574 0.6436 0.8891 36 1 5.2675 5.0683 1.7014 37 1 5.2645 6.3335 -1.8571 38 1 5.5062 6.8699 -0.1772 39 1 7.7395 6.6319 0.8374 40 1 7.3483 4.8969 0.7553 41 1 9.9975 6.3231 1.8287 42 1 9.5461 4.6093 1.9947 43 1 11.0711 5.0543 1.1917 44 1 12.3366 7.6737 -3.3397 45 1 8.8047 5.9401 -3.9954 46 1 10.3771 5.4884 -3.2941 47 1 8.8778 4.7788 -2.6485 48 1 7.1905 7.2571 -2.6958 49 1 7.6493 7.9809 -1.1352 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350329435.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:31 Heat of formation + Delta-G solvation = 30.823764 kcal Electronic energy + Delta-G solvation = -27782.829197 eV Core-core repulsion = 24065.841996 eV Total energy + Delta-G solvation = -3716.987201 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.90952 -38.55465 -38.17353 -35.18283 -33.30295 -32.54666 -31.55778 -29.80761 -27.88508 -27.23597 -26.34729 -25.68465 -24.56903 -23.80243 -22.73688 -21.82106 -20.71306 -19.35912 -18.55253 -18.02385 -16.79016 -16.31862 -16.29926 -15.59566 -15.45045 -15.08933 -14.88171 -14.56291 -14.12347 -14.02276 -13.88339 -13.51761 -13.44697 -13.16653 -12.96283 -12.50662 -12.31429 -12.20772 -11.86422 -11.68497 -11.58381 -11.54741 -11.31012 -11.12794 -10.90623 -10.85699 -10.59960 -10.54525 -10.41610 -10.06209 -10.04305 -9.92144 -9.64627 -9.48718 -9.33723 -9.12482 -8.83070 -8.43035 -7.84393 -6.61819 -5.72182 -3.17922 0.64410 1.30714 1.76547 2.74728 3.32196 3.39452 3.45863 3.46704 4.18677 4.39459 4.52865 4.66293 4.72335 4.90566 4.93471 4.99367 5.02937 5.14733 5.18121 5.30045 5.30472 5.40591 5.50603 5.55672 5.64550 5.74117 5.82700 5.90148 6.07435 6.13673 6.14817 6.20596 6.32478 6.34441 6.42942 6.62471 6.73291 6.84144 6.97293 7.03897 7.09598 7.24795 7.47717 7.51445 7.68979 7.73309 7.84319 7.97985 8.47848 9.26405 9.88212 10.47191 11.32695 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.028921 B = 0.002366 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.924174 B =11830.380304 C =12129.465920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.391 6.391 3 C 0.069 3.931 4 C -0.038 4.038 5 C 0.026 3.974 6 N -0.465 5.465 7 C 0.030 3.970 8 C -0.189 4.189 9 C 0.124 3.876 10 N -0.524 5.524 11 C 0.046 3.954 12 C 0.173 3.827 13 H 0.032 0.968 14 C -0.137 4.137 15 N -0.584 5.584 16 C -0.248 4.248 17 H 0.069 0.931 18 C 0.002 3.998 19 N -0.896 5.896 20 Si 0.896 3.104 21 H -0.284 1.284 22 H -0.292 1.292 23 H -0.287 1.287 24 C 0.200 3.800 25 H 0.092 0.908 26 C -0.137 4.137 27 C 0.042 3.958 28 S 0.149 5.851 29 H 0.087 0.913 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.056 0.944 33 H 0.052 0.948 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.172 0.828 37 H 0.082 0.918 38 H 0.051 0.949 39 H 0.028 0.972 40 H 0.062 0.938 41 H 0.053 0.947 42 H 0.038 0.962 43 H 0.061 0.939 44 H 0.252 0.748 45 H 0.019 0.981 46 H 0.075 0.925 47 H 0.033 0.967 48 H 0.061 0.939 49 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.550 -8.547 2.780 22.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.310 6.310 3 C -0.009 4.009 4 C -0.079 4.079 5 C -0.252 4.252 6 N -0.179 5.179 7 C -0.121 4.121 8 C -0.311 4.311 9 C -0.006 4.006 10 N -0.249 5.249 11 C -0.083 4.083 12 C 0.066 3.934 13 H 0.049 0.951 14 C -0.195 4.195 15 N -0.307 5.307 16 C -0.377 4.377 17 H 0.087 0.913 18 C -0.196 4.196 19 N -0.540 5.540 20 Si 0.726 3.274 21 H -0.210 1.210 22 H -0.218 1.218 23 H -0.213 1.213 24 C 0.093 3.907 25 H 0.110 0.890 26 C -0.196 4.196 27 C -0.087 4.087 28 S 0.404 5.596 29 H 0.106 0.894 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.112 0.888 35 H 0.119 0.881 36 H 0.189 0.811 37 H 0.101 0.899 38 H 0.069 0.931 39 H 0.046 0.954 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.057 0.943 43 H 0.080 0.920 44 H 0.062 0.938 45 H 0.038 0.962 46 H 0.094 0.906 47 H 0.052 0.948 48 H 0.079 0.921 49 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -20.354 -9.542 1.810 22.553 hybrid contribution 0.584 2.265 1.405 2.729 sum -19.770 -7.277 3.215 21.311 Atomic orbital electron populations 1.22753 0.80639 1.02888 1.00142 1.87839 1.19994 1.27652 1.95495 1.22454 0.92642 0.84833 1.00962 1.19972 0.93052 0.89359 1.05531 1.26564 1.05189 1.01551 0.91848 1.66232 1.13494 1.06481 1.31714 1.21643 1.01562 0.92999 0.95911 1.25968 1.07413 1.01805 0.95932 1.20465 0.90261 0.89492 1.00353 1.61976 1.00104 1.41552 1.21231 1.22743 0.97295 0.99125 0.89137 1.20441 0.89099 0.92266 0.91577 0.95059 1.21791 1.00870 1.00445 0.96385 1.44259 1.25952 1.38596 1.21868 1.19147 0.96733 1.29862 0.91960 0.91332 1.24994 0.97159 1.01266 0.96186 1.70048 1.42658 1.41029 1.00294 0.86484 0.81651 0.82080 0.77212 1.21043 1.21773 1.21338 1.20351 0.85543 0.98246 0.86550 0.89040 1.21973 1.02438 0.98582 0.96570 1.22901 0.99603 0.89705 0.96459 1.83979 1.55140 1.08934 1.11529 0.89433 0.93954 0.93950 0.92529 0.92963 0.88830 0.88064 0.81127 0.89943 0.93133 0.95364 0.91977 0.92769 0.94318 0.92004 0.93834 0.96151 0.90578 0.94803 0.92062 0.95568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.66 10.70 -35.23 -0.38 -4.04 16 3 C 0.07 0.61 5.92 37.15 0.22 0.83 16 4 C -0.04 -0.37 6.17 -27.89 -0.17 -0.54 16 5 C 0.03 0.31 6.64 -13.46 -0.09 0.22 16 6 N -0.46 -6.33 10.54 -11.86 -0.13 -6.46 16 7 C 0.03 0.40 9.68 -19.18 -0.19 0.22 16 8 C -0.19 -2.50 5.51 -35.92 -0.20 -2.69 16 9 C 0.12 1.70 5.50 -4.98 -0.03 1.68 16 10 N -0.52 -8.94 4.12 -235.78 -0.97 -9.92 16 11 C 0.05 0.83 4.72 -3.70 -0.02 0.81 16 12 C 0.17 3.61 3.25 -67.49 -0.22 3.40 16 13 H 0.03 0.72 7.60 -51.93 -0.39 0.32 16 14 C -0.14 -2.60 7.95 37.16 0.30 -2.31 16 15 N -0.58 -13.99 2.72 -157.00 -0.43 -14.42 16 16 C -0.25 -6.49 8.72 -15.06 -0.13 -6.62 16 17 H 0.07 1.78 6.17 -52.49 -0.32 1.45 16 18 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 19 N -0.90 -24.86 9.81 55.49 0.54 -24.31 16 20 Si 0.90 21.32 29.59 -169.99 -5.03 16.29 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 C 0.20 4.55 2.35 -67.49 -0.16 4.39 16 25 H 0.09 2.36 6.25 -51.93 -0.32 2.03 16 26 C -0.14 -3.06 8.98 37.16 0.33 -2.73 16 27 C 0.04 0.79 5.01 -3.70 -0.02 0.77 16 28 S 0.15 1.76 23.18 -107.50 -2.49 -0.73 16 29 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.17 2.07 8.03 -52.49 -0.42 1.65 16 37 H 0.08 1.04 7.97 -51.93 -0.41 0.63 16 38 H 0.05 0.66 8.12 -51.93 -0.42 0.24 16 39 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.06 1.03 5.90 -51.93 -0.31 0.73 16 41 H 0.05 1.04 7.32 -51.93 -0.38 0.66 16 42 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.06 1.25 7.79 -51.93 -0.40 0.85 16 44 H 0.25 6.86 8.32 -40.82 -0.34 6.52 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.08 1.95 6.77 -51.93 -0.35 1.60 16 47 H 0.03 0.74 7.06 -51.93 -0.37 0.38 16 48 H 0.06 1.04 7.99 -51.93 -0.41 0.62 16 49 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 393.17 15.07 5.93 5.93 Total: -1.00 -29.11 393.17 -10.61 -39.71 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -8.31 Total: -0.75 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: 0.66 Total: -1.30 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: -0.98 Total: -55.11 kcal Atomic # 8 Polarization: -3.66 SS G_CDS: -0.38 Total: -4.04 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.29 kcal Atomic # 16 Polarization: 1.76 SS G_CDS: -2.49 Total: -0.73 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -29.11 -10.61 -39.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350329435.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.536 kcal (2) G-P(sol) polarization free energy of solvation -29.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds