Wall clock time and date at job start Tue Mar 31 2020 22:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42900 * 114.00356 * 2 1 4 4 C 1.52994 * 109.47549 * 180.02562 * 3 2 1 5 5 C 1.50701 * 109.47105 * 180.02562 * 4 3 2 6 6 N 1.29028 * 124.91455 * 90.02655 * 5 4 3 7 7 C 1.31787 * 117.12538 * 179.97438 * 6 5 4 8 8 C 1.33642 * 114.49895 * 0.02562 * 7 6 5 9 9 C 1.50696 * 126.03804 * 180.02562 * 8 7 6 10 10 N 1.46900 * 109.47441 * 89.99176 * 9 8 7 11 11 C 1.46896 * 111.00125 * 294.30588 * 10 9 8 12 12 C 1.53236 * 109.33948 * 172.74668 * 11 10 9 13 13 H 1.09006 * 109.62608 * 294.11784 * 12 11 10 14 14 C 1.53008 * 109.62960 * 173.53676 * 12 11 10 15 15 N 1.47081 * 108.52625 * 53.82625 * 12 11 10 16 16 C 1.36941 * 120.88192 * 128.83328 * 15 12 11 17 17 H 1.07993 * 119.99886 * 331.85145 * 16 15 12 18 18 C 1.38810 * 119.99612 * 151.84741 * 16 15 12 19 19 N 1.31621 * 120.00365 * 342.75574 * 18 16 15 20 20 Si 1.86800 * 119.99913 * 162.75864 * 18 16 15 21 21 H 1.48501 * 109.47030 * 59.99845 * 20 18 16 22 22 H 1.48502 * 109.47171 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47054 * 299.99818 * 20 18 16 24 24 C 1.47081 * 118.23366 * 308.82125 * 15 12 11 25 25 H 1.09002 * 109.62551 * 170.89217 * 24 15 12 26 26 C 1.53001 * 109.62592 * 291.46524 * 24 15 12 27 27 C 1.46897 * 110.99999 * 169.99881 * 10 9 8 28 28 S 1.70983 * 124.91877 * 269.72368 * 5 4 3 29 29 H 1.08999 * 109.47019 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46921 * 299.99407 * 1 2 3 31 31 H 1.08999 * 109.47555 * 59.99454 * 1 2 3 32 32 H 1.09004 * 109.46747 * 60.00204 * 3 2 1 33 33 H 1.09002 * 109.47310 * 300.01023 * 3 2 1 34 34 H 1.09001 * 109.47125 * 60.00809 * 4 3 2 35 35 H 1.08998 * 109.47210 * 299.99966 * 4 3 2 36 36 H 1.07998 * 122.74694 * 180.02562 * 7 6 5 37 37 H 1.09000 * 109.47092 * 210.00010 * 9 8 7 38 38 H 1.09002 * 109.46850 * 329.99070 * 9 8 7 39 39 H 1.09004 * 109.49449 * 292.70449 * 11 10 9 40 40 H 1.08996 * 109.49553 * 52.78144 * 11 10 9 41 41 H 1.08994 * 109.47195 * 296.59609 * 14 12 11 42 42 H 1.09003 * 109.46634 * 56.59574 * 14 12 11 43 43 H 1.08996 * 109.47110 * 176.59143 * 14 12 11 44 44 H 0.96997 * 120.00283 * 175.08837 * 19 18 16 45 45 H 1.09000 * 109.46690 * 179.02629 * 26 24 15 46 46 H 1.08996 * 109.47284 * 299.03669 * 26 24 15 47 47 H 1.09000 * 109.46610 * 59.03803 * 26 24 15 48 48 H 1.08996 * 109.49410 * 307.22005 * 27 10 9 49 49 H 1.09002 * 109.49216 * 67.29440 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1484 2.5614 0.0000 6 7 4.4496 3.2352 1.0583 7 6 4.9810 4.4279 0.8803 8 6 5.1362 4.7800 -0.3995 9 6 5.7151 6.0791 -0.8977 10 7 7.1680 5.9370 -1.0613 11 6 7.8258 5.7273 0.2353 12 6 9.3062 5.4044 0.0069 13 1 9.3972 4.4464 -0.5053 14 6 10.0325 5.3434 1.3523 15 7 9.8935 6.4665 -0.8239 16 6 11.0453 7.1014 -0.4423 17 1 11.2925 7.1879 0.6054 18 6 11.8950 7.6336 -1.4023 19 7 11.7922 7.2507 -2.6574 20 14 13.1846 8.8933 -0.9129 21 1 14.1041 8.2968 0.0891 22 1 13.9576 9.3024 -2.1131 23 1 12.5170 10.0828 -0.3257 24 6 9.2110 6.8284 -2.0754 25 1 9.6654 7.7266 -2.4938 26 6 9.3260 5.6761 -3.0753 27 6 7.7343 7.0954 -1.7651 28 16 4.5521 3.4536 -1.4016 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.6886 1.8463 0.8900 33 1 1.6885 1.8465 -0.8899 34 1 3.8567 0.6440 -0.8909 35 1 3.8574 0.6436 0.8891 36 1 5.2675 5.0683 1.7014 37 1 5.2645 6.3335 -1.8571 38 1 5.5062 6.8699 -0.1772 39 1 7.7395 6.6319 0.8374 40 1 7.3483 4.8969 0.7553 41 1 9.9975 6.3231 1.8287 42 1 9.5461 4.6093 1.9947 43 1 11.0711 5.0543 1.1917 44 1 12.3366 7.6737 -3.3397 45 1 8.8047 5.9401 -3.9954 46 1 10.3771 5.4884 -3.2941 47 1 8.8778 4.7788 -2.6485 48 1 7.1905 7.2571 -2.6958 49 1 7.6493 7.9809 -1.1352 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350329435.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:30 Heat of formation + Delta-G solvation = 13.223321 kcal Electronic energy + Delta-G solvation = -27783.592409 eV Core-core repulsion = 24065.841996 eV Total energy + Delta-G solvation = -3717.750414 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.92804 -39.98960 -38.87102 -36.68367 -34.29562 -34.24926 -33.18339 -31.05783 -29.57666 -28.10936 -27.66755 -26.80357 -25.98263 -25.21777 -23.63000 -23.18252 -22.36830 -20.45582 -20.16669 -18.97525 -18.04304 -17.47578 -17.15345 -16.91140 -16.51227 -16.30229 -16.03279 -15.99244 -15.68580 -15.32755 -15.12140 -14.82309 -14.69008 -14.29308 -14.21033 -13.77992 -13.57788 -13.38400 -13.29099 -12.89902 -12.87026 -12.74521 -12.63898 -12.38497 -12.32026 -12.27365 -12.20570 -12.16128 -12.02995 -11.90913 -11.63933 -11.25910 -11.02027 -10.68103 -10.57977 -10.44200 -10.19042 -9.78336 -9.21830 -8.53926 -7.73662 -5.21190 -0.30878 0.38130 0.81932 1.48847 1.50350 1.56192 1.78352 2.56396 2.64988 3.07563 3.36989 3.38337 3.62018 3.85031 3.96373 4.05665 4.13204 4.18531 4.24296 4.32289 4.44201 4.50872 4.54260 4.54734 4.56841 4.59724 4.64000 4.74371 4.77921 4.81994 4.86421 4.87323 4.88132 4.91642 4.99513 5.09085 5.20906 5.25069 5.33077 5.40442 5.52643 5.71344 5.78651 6.02005 6.15255 6.19867 6.23716 6.49950 6.74977 7.27034 7.96464 8.50669 9.28027 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.028921 B = 0.002366 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.924174 B =11830.380304 C =12129.465920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.411 6.411 3 C 0.074 3.926 4 C -0.039 4.039 5 C 0.031 3.969 6 N -0.490 5.490 7 C 0.029 3.971 8 C -0.207 4.207 9 C 0.130 3.870 10 N -0.532 5.532 11 C 0.062 3.938 12 C 0.166 3.834 13 H 0.010 0.990 14 C -0.128 4.128 15 N -0.598 5.598 16 C -0.250 4.250 17 H 0.069 0.931 18 C -0.048 4.048 19 N -0.920 5.920 20 Si 0.953 3.047 21 H -0.282 1.282 22 H -0.298 1.298 23 H -0.283 1.283 24 C 0.196 3.804 25 H 0.057 0.943 26 C -0.119 4.119 27 C 0.056 3.944 28 S 0.170 5.830 29 H 0.100 0.900 30 H 0.047 0.953 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.179 0.821 37 H 0.097 0.903 38 H 0.062 0.938 39 H 0.026 0.974 40 H 0.078 0.922 41 H 0.050 0.950 42 H 0.069 0.931 43 H 0.041 0.959 44 H 0.245 0.755 45 H 0.037 0.963 46 H 0.037 0.963 47 H 0.033 0.967 48 H 0.083 0.917 49 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.674 -8.925 3.371 24.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.330 6.330 3 C -0.004 4.004 4 C -0.080 4.080 5 C -0.246 4.246 6 N -0.205 5.205 7 C -0.123 4.123 8 C -0.329 4.329 9 C 0.000 4.000 10 N -0.257 5.257 11 C -0.067 4.067 12 C 0.060 3.940 13 H 0.028 0.972 14 C -0.186 4.186 15 N -0.321 5.321 16 C -0.380 4.380 17 H 0.087 0.913 18 C -0.244 4.244 19 N -0.566 5.566 20 Si 0.783 3.217 21 H -0.208 1.208 22 H -0.225 1.225 23 H -0.210 1.210 24 C 0.089 3.911 25 H 0.075 0.925 26 C -0.178 4.178 27 C -0.073 4.073 28 S 0.425 5.575 29 H 0.118 0.882 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.124 0.876 35 H 0.116 0.884 36 H 0.196 0.804 37 H 0.115 0.885 38 H 0.080 0.920 39 H 0.045 0.955 40 H 0.096 0.904 41 H 0.069 0.931 42 H 0.088 0.912 43 H 0.060 0.940 44 H 0.054 0.946 45 H 0.056 0.944 46 H 0.057 0.943 47 H 0.052 0.948 48 H 0.101 0.899 49 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -22.509 -9.931 2.416 24.721 hybrid contribution 1.166 2.259 1.230 2.825 sum -21.343 -7.671 3.646 22.971 Atomic orbital electron populations 1.22953 0.79125 1.04072 1.00929 1.87804 1.21712 1.27872 1.95631 1.22379 0.91936 0.84853 1.01237 1.20055 0.93724 0.88207 1.05967 1.26934 1.04032 1.01972 0.91657 1.66282 1.14666 1.06974 1.32544 1.21816 1.01168 0.93034 0.96281 1.25923 1.08527 1.02159 0.96282 1.20454 0.87634 0.90250 1.01616 1.61876 1.02248 1.40759 1.20781 1.22485 0.95074 0.99530 0.89659 1.20600 0.91386 0.90412 0.91601 0.97216 1.21694 0.99817 1.01136 0.95965 1.44493 1.25676 1.39410 1.22561 1.19409 0.97272 1.29354 0.91987 0.91321 1.25634 0.99145 1.03190 0.96392 1.70207 1.43624 1.41876 1.00858 0.85569 0.79566 0.80147 0.76438 1.20798 1.22481 1.20968 1.20279 0.87967 0.96660 0.86166 0.92526 1.21747 1.00065 0.98601 0.97385 1.22591 0.96985 0.90039 0.97667 1.83900 1.54494 1.08165 1.10893 0.88158 0.93387 0.92934 0.92947 0.91973 0.87628 0.88394 0.80386 0.88498 0.92006 0.95535 0.90412 0.93074 0.91219 0.93988 0.94618 0.94391 0.94345 0.94766 0.89888 0.96047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.52 16 2 O -0.41 -7.00 10.70 -148.98 -1.59 -8.59 16 3 C 0.07 1.16 5.92 71.98 0.43 1.59 16 4 C -0.04 -0.67 6.17 29.85 0.18 -0.49 16 5 C 0.03 0.68 6.64 88.52 0.59 1.26 16 6 N -0.49 -12.43 10.54 -191.44 -2.02 -14.45 16 7 C 0.03 0.70 9.68 83.66 0.81 1.51 16 8 C -0.21 -4.94 5.51 24.64 0.14 -4.81 16 9 C 0.13 3.19 5.50 85.56 0.47 3.66 16 10 N -0.53 -17.07 4.12 -899.86 -3.71 -20.78 16 11 C 0.06 2.09 4.72 86.38 0.41 2.50 16 12 C 0.17 6.86 3.25 44.96 0.15 7.01 16 13 H 0.01 0.46 7.60 -2.38 -0.02 0.44 16 14 C -0.13 -4.77 7.95 71.98 0.57 -4.20 16 15 N -0.60 -28.89 2.72 -650.63 -1.77 -30.66 16 16 C -0.25 -13.27 8.72 84.03 0.73 -12.54 16 17 H 0.07 3.58 6.17 -2.91 -0.02 3.56 16 18 C -0.05 -2.61 4.91 84.86 0.42 -2.19 16 19 N -0.92 -52.55 9.81 21.65 0.21 -52.33 16 20 Si 0.95 44.62 29.59 68.60 2.03 46.65 16 21 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 22 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 23 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 24 C 0.20 8.96 2.35 44.96 0.11 9.06 16 25 H 0.06 2.99 6.25 -2.39 -0.01 2.97 16 26 C -0.12 -5.37 8.98 71.98 0.65 -4.72 16 27 C 0.06 2.02 5.01 86.38 0.43 2.45 16 28 S 0.17 3.61 23.18 -56.49 -1.31 2.30 16 29 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.18 3.91 8.03 -2.91 -0.02 3.88 16 37 H 0.10 2.12 7.97 -2.39 -0.02 2.10 16 38 H 0.06 1.42 8.12 -2.39 -0.02 1.40 16 39 H 0.03 0.92 8.14 -2.38 -0.02 0.90 16 40 H 0.08 2.40 5.90 -2.39 -0.01 2.39 16 41 H 0.05 1.91 7.32 -2.39 -0.02 1.90 16 42 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.04 1.69 7.79 -2.39 -0.02 1.68 16 44 H 0.24 13.77 8.32 -92.71 -0.77 13.00 16 45 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.04 2.01 6.77 -2.39 -0.02 1.99 16 47 H 0.03 1.50 7.06 -2.39 -0.02 1.48 16 48 H 0.08 2.61 7.99 -2.39 -0.02 2.60 16 49 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -63.06 393.17 0.08 -62.98 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: 0.92 Total: 13.28 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: 7.32 Total: 1.61 kcal Atomic # 7 Polarization: -110.93 SS G_CDS: -7.29 Total: -118.22 kcal Atomic # 8 Polarization: -7.00 SS G_CDS: -1.59 Total: -8.59 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Atomic # 16 Polarization: 3.61 SS G_CDS: -1.31 Total: 2.30 kcal Total: -63.06 0.08 -62.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350329435.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.199 kcal (2) G-P(sol) polarization free energy of solvation -63.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds