Wall clock time and date at job start Tue Mar 31 2020 23:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.29822 * 118.55439 * 2 1 4 4 C 1.50694 * 118.35974 * 0.37500 * 3 2 1 5 5 C 1.50149 * 123.28143 * 180.39241 * 3 2 1 6 6 N 1.46845 * 110.27484 * 342.92767 * 5 3 2 7 7 C 1.37893 * 110.99431 * 174.31240 * 6 5 3 8 8 N 1.31878 * 126.32512 * 236.01847 * 7 6 5 9 9 N 1.28523 * 110.07265 * 180.02562 * 8 7 6 10 10 C 1.31819 * 109.84217 * 0.02562 * 9 8 7 11 11 C 1.46884 * 126.49279 * 180.02562 * 10 9 8 12 12 N 1.33076 * 120.33665 * 180.26893 * 11 10 9 13 13 C 1.31473 * 121.62539 * 180.29166 * 12 11 10 14 14 C 1.38855 * 122.19545 * 359.71482 * 13 12 11 15 15 C 1.36705 * 120.45062 * 359.97438 * 14 13 12 16 16 C 1.41274 * 118.37810 * 0.02562 * 15 14 13 17 17 C 1.40658 * 120.98689 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99771 * 208.29004 * 17 16 15 19 19 C 1.39992 * 120.00200 * 28.29578 * 17 16 15 20 20 N 1.30818 * 119.99977 * 26.18532 * 19 17 16 21 21 Si 1.86800 * 120.00173 * 206.19072 * 19 17 16 22 22 H 1.48498 * 109.47272 * 179.97438 * 21 19 17 23 23 H 1.48499 * 109.47067 * 299.99569 * 21 19 17 24 24 H 1.48504 * 109.47209 * 59.99500 * 21 19 17 25 25 N 1.36289 * 126.32899 * 56.36773 * 7 6 5 26 26 C 1.46500 * 127.13776 * 359.96402 * 25 7 6 27 27 C 1.47237 * 110.20367 * 50.92832 * 6 5 3 28 28 C 1.50314 * 118.55152 * 179.97438 * 2 1 3 29 29 H 1.09003 * 109.46879 * 5.18818 * 1 2 3 30 30 H 1.09006 * 109.47132 * 125.18087 * 1 2 3 31 31 H 1.08995 * 109.47167 * 245.18537 * 1 2 3 32 32 H 1.08997 * 109.47108 * 175.56051 * 4 3 2 33 33 H 1.09001 * 109.46867 * 295.55321 * 4 3 2 34 34 H 1.08994 * 109.47439 * 55.55420 * 4 3 2 35 35 H 1.08999 * 109.33607 * 222.67965 * 5 3 2 36 36 H 1.09003 * 109.19959 * 103.09118 * 5 3 2 37 37 H 1.07996 * 118.90500 * 179.74164 * 13 12 11 38 38 H 1.08004 * 119.77582 * 179.97438 * 14 13 12 39 39 H 1.08000 * 120.81151 * 180.02562 * 15 14 13 40 40 H 0.97005 * 120.00019 * 355.48903 * 20 19 17 41 41 H 1.08994 * 109.47359 * 270.20818 * 26 25 7 42 42 H 1.09000 * 109.47121 * 30.21513 * 26 25 7 43 43 H 1.09000 * 109.46891 * 150.20995 * 26 25 7 44 44 H 1.08995 * 109.64005 * 50.88783 * 27 6 5 45 45 H 1.09002 * 109.63906 * 171.49740 * 27 6 5 46 46 H 1.08999 * 109.42837 * 283.58106 * 28 2 1 47 47 H 1.08996 * 109.42974 * 43.42214 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1276 1.1403 0.0000 4 6 1.3050 2.4029 0.0087 5 6 3.6239 1.2641 -0.0086 6 7 4.2420 -0.0076 0.3879 7 6 5.6141 0.0500 0.2636 8 7 6.3693 -0.7671 -0.4443 9 7 7.6046 -0.4282 -0.3393 10 6 7.7142 0.6269 0.4434 11 6 8.9579 1.3163 0.8112 12 7 8.9268 2.3732 1.6192 13 6 10.0238 3.0127 1.9603 14 6 11.2776 2.6250 1.5067 15 6 11.4113 1.5467 0.6771 16 6 10.2465 0.8436 0.2967 17 6 10.3205 -0.2733 -0.5550 18 1 9.4854 -0.5219 -1.1932 19 6 11.4764 -1.0627 -0.5754 20 7 12.2490 -1.1185 0.4787 21 14 11.9158 -2.0362 -2.1080 22 1 13.1773 -2.7840 -1.8747 23 1 10.8228 -2.9927 -2.4170 24 1 12.0967 -1.1053 -3.2508 25 7 6.4409 0.9578 0.8549 26 6 6.0560 2.0589 1.7413 27 6 3.6859 -1.1136 -0.4092 28 6 2.2254 -1.3203 0.0006 29 1 -0.3633 1.0235 -0.0929 30 1 -0.3634 -0.5921 -0.8400 31 1 -0.3633 -0.4313 0.9327 32 1 1.9655 3.2663 0.0871 33 1 0.7299 2.4682 -0.9150 34 1 0.6245 2.3874 0.8600 35 1 3.9255 2.0451 0.6894 36 1 3.9559 1.5293 -1.0124 37 1 9.9472 3.8678 2.6155 38 1 12.1531 3.1791 1.8114 39 1 12.3837 1.2399 0.3211 40 1 12.0573 -0.5631 1.2506 41 1 5.8578 2.9511 1.1475 42 1 5.1580 1.7833 2.2941 43 1 6.8661 2.2614 2.4420 44 1 3.7372 -0.8634 -1.4688 45 1 4.2526 -2.0247 -0.2172 46 1 2.1867 -1.7537 1.0000 47 1 1.7430 -1.9960 -0.7056 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001355246989.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:44 Heat of formation + Delta-G solvation = 129.051880 kcal Electronic energy + Delta-G solvation = -29460.909823 eV Core-core repulsion = 25645.030912 eV Total energy + Delta-G solvation = -3815.878911 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.05753 -39.48840 -38.25365 -35.56741 -34.71526 -34.13666 -32.12739 -31.20594 -30.50872 -29.10944 -27.71190 -27.21421 -26.48191 -25.63709 -23.63284 -22.97079 -22.57767 -21.64174 -20.09447 -19.96885 -18.12417 -17.22896 -17.01403 -15.86354 -15.80518 -15.58761 -15.18578 -15.04008 -14.66766 -14.47563 -14.26968 -14.01869 -13.76037 -13.68802 -13.01416 -12.92852 -12.74881 -12.70538 -12.57467 -12.30976 -12.21229 -12.14136 -11.96021 -11.83230 -11.72449 -11.33849 -11.17199 -10.98495 -10.74936 -10.59287 -10.43631 -10.05192 -9.79655 -9.46896 -9.39132 -9.28703 -8.73712 -8.62063 -8.39515 -8.16623 -7.51319 -7.16620 -4.66322 1.84154 1.96964 2.60207 2.75486 2.90480 3.11323 3.23394 3.33025 3.73315 3.87665 3.99151 4.44907 4.46025 4.59284 4.86108 5.05754 5.07291 5.17367 5.18888 5.23959 5.32081 5.32554 5.36385 5.41834 5.44026 5.55535 5.56815 5.62453 5.66603 5.72463 5.75679 5.88697 5.92355 5.99844 6.01423 6.07046 6.25814 6.29082 6.47497 6.56317 6.67838 6.82399 6.85195 6.93466 7.13992 7.30870 7.44242 7.56642 7.74190 7.80335 7.97734 8.42782 8.55355 9.25589 9.59752 9.71443 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.015261 B = 0.003244 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.328214 B = 8628.536756 C =10144.342385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.119 4.119 3 C -0.134 4.134 4 C -0.112 4.112 5 C 0.090 3.910 6 N -0.442 5.442 7 C 0.316 3.684 8 N -0.324 5.324 9 N -0.276 5.276 10 C 0.291 3.709 11 C 0.008 3.992 12 N -0.436 5.436 13 C -0.058 4.058 14 C -0.116 4.116 15 C -0.185 4.185 16 C 0.070 3.930 17 C -0.432 4.432 18 H 0.123 0.877 19 C 0.031 3.969 20 N -0.765 5.765 21 Si 1.071 2.929 22 H -0.272 1.272 23 H -0.266 1.266 24 H -0.270 1.270 25 N -0.478 5.478 26 C 0.085 3.915 27 C 0.071 3.929 28 C -0.079 4.079 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.089 0.911 36 H 0.053 0.947 37 H 0.123 0.877 38 H 0.101 0.899 39 H 0.114 0.886 40 H 0.302 0.698 41 H 0.065 0.935 42 H 0.075 0.925 43 H 0.110 0.890 44 H 0.052 0.948 45 H 0.096 0.904 46 H 0.082 0.918 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.470 3.745 -0.457 16.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.119 4.119 3 C -0.135 4.135 4 C -0.169 4.169 5 C -0.037 4.037 6 N -0.165 5.165 7 C -0.039 4.039 8 N -0.170 5.170 9 N -0.116 5.116 10 C 0.030 3.970 11 C -0.132 4.132 12 N -0.145 5.145 13 C -0.221 4.221 14 C -0.137 4.137 15 C -0.211 4.211 16 C 0.063 3.937 17 C -0.458 4.458 18 H 0.140 0.860 19 C -0.195 4.195 20 N -0.386 5.386 21 Si 0.893 3.107 22 H -0.197 1.197 23 H -0.191 1.191 24 H -0.195 1.195 25 N -0.173 5.173 26 C -0.058 4.058 27 C -0.056 4.056 28 C -0.116 4.116 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.107 0.893 36 H 0.071 0.929 37 H 0.140 0.860 38 H 0.120 0.880 39 H 0.132 0.868 40 H 0.116 0.884 41 H 0.084 0.916 42 H 0.093 0.907 43 H 0.128 0.872 44 H 0.070 0.930 45 H 0.115 0.885 46 H 0.100 0.900 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -15.944 1.687 -1.076 16.069 hybrid contribution -0.413 2.280 0.786 2.447 sum -16.356 3.967 -0.290 16.833 Atomic orbital electron populations 1.21022 0.92313 1.02820 1.01985 1.20831 0.95589 0.94502 1.00973 1.20660 0.93775 0.95274 1.03766 1.20828 0.99186 0.95027 1.01901 1.21098 0.91621 0.90854 1.00112 1.58831 0.97877 1.05740 1.54067 1.22220 0.89671 0.93485 0.98571 1.74712 0.98301 1.24233 1.19799 1.74718 1.08410 1.10699 1.17823 1.22218 0.82961 0.94819 0.96978 1.18717 0.87784 1.00027 1.06719 1.66748 1.32365 1.05792 1.09577 1.21309 0.87943 1.03768 1.09045 1.21246 0.97606 0.97029 0.97780 1.21154 0.98121 0.97929 1.03868 1.19116 0.89910 0.93695 0.91003 1.21371 1.02585 1.06414 1.15462 0.85981 1.27489 0.91849 0.97828 1.02302 1.70527 1.36481 1.28109 1.03523 0.83532 0.77646 0.76591 0.72970 1.19659 1.19092 1.19486 1.45908 1.06555 1.25863 1.39000 1.22087 1.02772 0.86990 0.93947 1.22105 0.94464 0.93853 0.95155 1.20527 0.93469 0.94956 1.02643 0.91339 0.91783 0.91628 0.92184 0.91518 0.91362 0.89316 0.92869 0.85953 0.88040 0.86800 0.88391 0.91645 0.90668 0.87158 0.92998 0.88520 0.90005 0.90105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.95 9.70 36.01 0.35 -0.60 16 2 C -0.12 -1.22 5.89 -100.92 -0.59 -1.81 16 3 C -0.13 -1.46 5.91 -101.00 -0.60 -2.06 16 4 C -0.11 -0.93 8.39 36.00 0.30 -0.63 16 5 C 0.09 1.20 4.93 -5.27 -0.03 1.18 16 6 N -0.44 -7.00 4.74 -176.01 -0.84 -7.84 16 7 C 0.32 6.30 7.15 -319.26 -2.28 4.02 16 8 N -0.32 -7.44 11.09 30.26 0.34 -7.11 16 9 N -0.28 -7.01 9.23 32.50 0.30 -6.71 16 10 C 0.29 7.11 7.75 -153.47 -1.19 5.92 16 11 C 0.01 0.21 6.96 -80.47 -0.56 -0.35 16 12 N -0.44 -10.02 7.88 -8.15 -0.06 -10.09 16 13 C -0.06 -1.24 11.11 -17.48 -0.19 -1.44 16 14 C -0.12 -2.47 9.98 -39.91 -0.40 -2.87 16 15 C -0.19 -4.41 7.94 -38.98 -0.31 -4.72 16 16 C 0.07 1.82 5.43 -104.47 -0.57 1.25 16 17 C -0.43 -11.23 8.11 -38.01 -0.31 -11.54 16 18 H 0.12 3.29 5.74 -52.49 -0.30 2.99 16 19 C 0.03 0.75 4.94 -17.33 -0.09 0.66 16 20 N -0.77 -19.27 12.75 55.55 0.71 -18.57 16 21 Si 1.07 21.12 30.01 -169.99 -5.10 16.02 16 22 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 23 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 24 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 25 N -0.48 -9.82 3.23 -122.27 -0.39 -10.21 16 26 C 0.09 1.39 8.98 59.85 0.54 1.92 16 27 C 0.07 1.00 5.09 -3.59 -0.02 0.98 16 28 C -0.08 -0.84 6.05 -28.02 -0.17 -1.01 16 29 H 0.07 0.47 5.37 -51.93 -0.28 0.19 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.48 7.95 -51.93 -0.41 0.06 16 33 H 0.07 0.49 7.70 -51.93 -0.40 0.09 16 34 H 0.07 0.50 7.44 -51.93 -0.39 0.11 16 35 H 0.09 1.13 5.60 -51.93 -0.29 0.84 16 36 H 0.05 0.77 8.10 -51.93 -0.42 0.35 16 37 H 0.12 2.22 8.06 -52.49 -0.42 1.80 16 38 H 0.10 1.83 8.06 -52.48 -0.42 1.41 16 39 H 0.11 2.69 6.82 -52.49 -0.36 2.33 16 40 H 0.30 7.78 6.37 -40.82 -0.26 7.52 16 41 H 0.06 0.95 7.93 -51.93 -0.41 0.54 16 42 H 0.07 1.04 7.51 -51.93 -0.39 0.65 16 43 H 0.11 1.94 6.30 -51.93 -0.33 1.61 16 44 H 0.05 0.75 8.08 -51.93 -0.42 0.33 16 45 H 0.10 1.47 7.66 -51.93 -0.40 1.08 16 46 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 47 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 371.81 15.07 5.60 5.60 Total: -1.00 -29.62 371.81 -11.94 -41.57 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -6.39 Total: 8.41 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -6.11 Total: -11.08 kcal Atomic # 7 Polarization: -60.57 SS G_CDS: 0.05 Total: -60.52 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.10 Total: 16.02 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.62 -11.94 -41.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355246989.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.618 kcal (2) G-P(sol) polarization free energy of solvation -29.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds