Wall clock time and date at job start Tue Mar 31 2020 23:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.29822 * 118.55439 * 2 1 4 4 C 1.50694 * 118.35974 * 0.37500 * 3 2 1 5 5 C 1.50149 * 123.28143 * 180.39241 * 3 2 1 6 6 N 1.46845 * 110.27484 * 342.92767 * 5 3 2 7 7 C 1.37893 * 110.99431 * 174.31240 * 6 5 3 8 8 N 1.31878 * 126.32512 * 236.01847 * 7 6 5 9 9 N 1.28523 * 110.07265 * 180.02562 * 8 7 6 10 10 C 1.31819 * 109.84217 * 0.02562 * 9 8 7 11 11 C 1.46884 * 126.49279 * 180.02562 * 10 9 8 12 12 N 1.33076 * 120.33665 * 180.26893 * 11 10 9 13 13 C 1.31473 * 121.62539 * 180.29166 * 12 11 10 14 14 C 1.38855 * 122.19545 * 359.71482 * 13 12 11 15 15 C 1.36705 * 120.45062 * 359.97438 * 14 13 12 16 16 C 1.41274 * 118.37810 * 0.02562 * 15 14 13 17 17 C 1.40658 * 120.98689 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99771 * 208.29004 * 17 16 15 19 19 C 1.39992 * 120.00200 * 28.29578 * 17 16 15 20 20 N 1.30818 * 119.99977 * 26.18532 * 19 17 16 21 21 Si 1.86800 * 120.00173 * 206.19072 * 19 17 16 22 22 H 1.48498 * 109.47272 * 179.97438 * 21 19 17 23 23 H 1.48499 * 109.47067 * 299.99569 * 21 19 17 24 24 H 1.48504 * 109.47209 * 59.99500 * 21 19 17 25 25 N 1.36289 * 126.32899 * 56.36773 * 7 6 5 26 26 C 1.46500 * 127.13776 * 359.96402 * 25 7 6 27 27 C 1.47237 * 110.20367 * 50.92832 * 6 5 3 28 28 C 1.50314 * 118.55152 * 179.97438 * 2 1 3 29 29 H 1.09003 * 109.46879 * 5.18818 * 1 2 3 30 30 H 1.09006 * 109.47132 * 125.18087 * 1 2 3 31 31 H 1.08995 * 109.47167 * 245.18537 * 1 2 3 32 32 H 1.08997 * 109.47108 * 175.56051 * 4 3 2 33 33 H 1.09001 * 109.46867 * 295.55321 * 4 3 2 34 34 H 1.08994 * 109.47439 * 55.55420 * 4 3 2 35 35 H 1.08999 * 109.33607 * 222.67965 * 5 3 2 36 36 H 1.09003 * 109.19959 * 103.09118 * 5 3 2 37 37 H 1.07996 * 118.90500 * 179.74164 * 13 12 11 38 38 H 1.08004 * 119.77582 * 179.97438 * 14 13 12 39 39 H 1.08000 * 120.81151 * 180.02562 * 15 14 13 40 40 H 0.97005 * 120.00019 * 355.48903 * 20 19 17 41 41 H 1.08994 * 109.47359 * 270.20818 * 26 25 7 42 42 H 1.09000 * 109.47121 * 30.21513 * 26 25 7 43 43 H 1.09000 * 109.46891 * 150.20995 * 26 25 7 44 44 H 1.08995 * 109.64005 * 50.88783 * 27 6 5 45 45 H 1.09002 * 109.63906 * 171.49740 * 27 6 5 46 46 H 1.08999 * 109.42837 * 283.58106 * 28 2 1 47 47 H 1.08996 * 109.42974 * 43.42214 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1276 1.1403 0.0000 4 6 1.3050 2.4029 0.0087 5 6 3.6239 1.2641 -0.0086 6 7 4.2420 -0.0076 0.3879 7 6 5.6141 0.0500 0.2636 8 7 6.3693 -0.7671 -0.4443 9 7 7.6046 -0.4282 -0.3393 10 6 7.7142 0.6269 0.4434 11 6 8.9579 1.3163 0.8112 12 7 8.9268 2.3732 1.6192 13 6 10.0238 3.0127 1.9603 14 6 11.2776 2.6250 1.5067 15 6 11.4113 1.5467 0.6771 16 6 10.2465 0.8436 0.2967 17 6 10.3205 -0.2733 -0.5550 18 1 9.4854 -0.5219 -1.1932 19 6 11.4764 -1.0627 -0.5754 20 7 12.2490 -1.1185 0.4787 21 14 11.9158 -2.0362 -2.1080 22 1 13.1773 -2.7840 -1.8747 23 1 10.8228 -2.9927 -2.4170 24 1 12.0967 -1.1053 -3.2508 25 7 6.4409 0.9578 0.8549 26 6 6.0560 2.0589 1.7413 27 6 3.6859 -1.1136 -0.4092 28 6 2.2254 -1.3203 0.0006 29 1 -0.3633 1.0235 -0.0929 30 1 -0.3634 -0.5921 -0.8400 31 1 -0.3633 -0.4313 0.9327 32 1 1.9655 3.2663 0.0871 33 1 0.7299 2.4682 -0.9150 34 1 0.6245 2.3874 0.8600 35 1 3.9255 2.0451 0.6894 36 1 3.9559 1.5293 -1.0124 37 1 9.9472 3.8678 2.6155 38 1 12.1531 3.1791 1.8114 39 1 12.3837 1.2399 0.3211 40 1 12.0573 -0.5631 1.2506 41 1 5.8578 2.9511 1.1475 42 1 5.1580 1.7833 2.2941 43 1 6.8661 2.2614 2.4420 44 1 3.7372 -0.8634 -1.4688 45 1 4.2526 -2.0247 -0.2172 46 1 2.1867 -1.7537 1.0000 47 1 1.7430 -1.9960 -0.7056 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001355246989.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:43 Heat of formation + Delta-G solvation = 115.564215 kcal Electronic energy + Delta-G solvation = -29461.494692 eV Core-core repulsion = 25645.030912 eV Total energy + Delta-G solvation = -3816.463780 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.71731 -40.59235 -40.02881 -36.69588 -36.45893 -35.73379 -33.21949 -32.75548 -32.30949 -30.40653 -28.90884 -28.51983 -27.66206 -27.41833 -24.75465 -24.34564 -23.95310 -23.36819 -21.75467 -21.50998 -19.95709 -18.52822 -18.24711 -17.39174 -17.32847 -17.00635 -16.49947 -16.43581 -16.09707 -15.93485 -15.61975 -15.27845 -14.76853 -14.70173 -14.59874 -14.37119 -14.22334 -14.04926 -13.84251 -13.66537 -13.40380 -13.24408 -13.09051 -13.03573 -12.80732 -12.71407 -12.48148 -12.43477 -12.06232 -11.96669 -11.63454 -11.54249 -11.44393 -11.13738 -11.07967 -11.02205 -10.40440 -10.19425 -9.89577 -9.47536 -9.38544 -8.90414 -6.57355 0.06931 0.81217 1.10983 1.19432 1.30328 1.48019 1.62422 1.79203 1.97626 2.24591 2.58184 2.64904 3.34636 3.48521 3.54364 3.65084 3.83123 3.93800 4.04549 4.08907 4.17397 4.23556 4.27815 4.32278 4.40930 4.46541 4.56212 4.58529 4.62262 4.66469 4.71998 4.77096 4.84819 4.85814 4.92854 5.03038 5.05258 5.07752 5.11979 5.12783 5.20580 5.34927 5.44894 5.60077 5.65335 5.68957 5.74364 5.94611 6.05543 6.09362 6.24273 6.57413 6.65103 7.43441 7.80556 7.86459 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.015261 B = 0.003244 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.328214 B = 8628.536756 C =10144.342385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.118 4.118 3 C -0.149 4.149 4 C -0.107 4.107 5 C 0.091 3.909 6 N -0.439 5.439 7 C 0.337 3.663 8 N -0.360 5.360 9 N -0.308 5.308 10 C 0.266 3.734 11 C -0.015 4.015 12 N -0.436 5.436 13 C -0.049 4.049 14 C -0.110 4.110 15 C -0.199 4.199 16 C 0.048 3.952 17 C -0.468 4.468 18 H 0.104 0.896 19 C 0.005 3.995 20 N -0.784 5.784 21 Si 1.114 2.886 22 H -0.261 1.261 23 H -0.267 1.267 24 H -0.255 1.255 25 N -0.477 5.477 26 C 0.084 3.916 27 C 0.069 3.931 28 C -0.073 4.073 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.038 0.962 37 H 0.165 0.835 38 H 0.142 0.858 39 H 0.109 0.891 40 H 0.289 0.711 41 H 0.084 0.916 42 H 0.101 0.899 43 H 0.099 0.901 44 H 0.043 0.957 45 H 0.078 0.922 46 H 0.085 0.915 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.751 5.414 0.282 19.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.119 4.119 3 C -0.150 4.150 4 C -0.164 4.164 5 C -0.036 4.036 6 N -0.162 5.162 7 C -0.020 4.020 8 N -0.206 5.206 9 N -0.149 5.149 10 C 0.003 3.997 11 C -0.154 4.154 12 N -0.146 5.146 13 C -0.212 4.212 14 C -0.130 4.130 15 C -0.225 4.225 16 C 0.041 3.959 17 C -0.495 4.495 18 H 0.121 0.879 19 C -0.216 4.216 20 N -0.406 5.406 21 Si 0.930 3.070 22 H -0.185 1.185 23 H -0.192 1.192 24 H -0.179 1.179 25 N -0.172 5.172 26 C -0.058 4.058 27 C -0.058 4.058 28 C -0.110 4.110 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.114 0.886 36 H 0.056 0.944 37 H 0.182 0.818 38 H 0.160 0.840 39 H 0.127 0.873 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.120 0.880 43 H 0.118 0.882 44 H 0.062 0.938 45 H 0.096 0.904 46 H 0.104 0.896 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -18.262 3.373 -0.326 18.574 hybrid contribution 0.133 1.916 0.701 2.045 sum -18.129 5.290 0.375 18.889 Atomic orbital electron populations 1.21044 0.89884 1.03962 1.02880 1.21081 0.97284 0.93708 0.99781 1.20743 0.92133 0.96985 1.05118 1.20836 0.99063 0.93477 1.03064 1.21182 0.93553 0.89440 0.99381 1.59042 0.95437 1.07621 1.54148 1.22685 0.91181 0.91764 0.96391 1.74617 0.98008 1.26043 1.21914 1.74626 1.09778 1.11705 1.18800 1.22217 0.84239 0.95278 0.97961 1.18950 0.88033 1.00946 1.07443 1.66863 1.33100 1.05359 1.09241 1.22142 0.87477 1.03776 1.07806 1.21673 0.99298 0.95952 0.96080 1.21239 0.97378 0.98883 1.04988 1.19490 0.91124 0.94098 0.91170 1.21324 1.03072 1.08007 1.17057 0.87869 1.28631 0.91147 0.97939 1.03839 1.70626 1.37356 1.28971 1.03599 0.83037 0.77625 0.75832 0.70473 1.18508 1.19215 1.17941 1.46072 1.05395 1.26586 1.39128 1.22306 1.03306 0.86543 0.93603 1.22193 0.96566 0.92428 0.94594 1.20544 0.90895 0.96164 1.03412 0.90182 0.90737 0.90730 0.92086 0.90402 0.89961 0.88551 0.94433 0.81772 0.84040 0.87282 0.89841 0.89775 0.88031 0.88217 0.93826 0.90373 0.89635 0.87764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.40 9.70 71.24 0.69 -0.71 16 2 C -0.12 -2.10 5.89 -15.39 -0.09 -2.19 16 3 C -0.15 -2.91 5.91 -15.45 -0.09 -3.00 16 4 C -0.11 -1.44 8.39 71.23 0.60 -0.84 16 5 C 0.09 2.32 4.93 85.39 0.42 2.75 16 6 N -0.44 -13.78 4.74 -710.77 -3.37 -17.15 16 7 C 0.34 13.70 7.15 260.25 1.86 15.56 16 8 N -0.36 -17.36 11.09 -58.19 -0.65 -18.00 16 9 N -0.31 -16.60 9.23 -51.08 -0.47 -17.07 16 10 C 0.27 13.51 7.75 135.68 1.05 14.56 16 11 C -0.01 -0.75 6.96 43.40 0.30 -0.45 16 12 N -0.44 -19.77 7.88 -179.69 -1.42 -21.18 16 13 C -0.05 -1.96 11.11 84.89 0.94 -1.02 16 14 C -0.11 -4.48 9.98 22.06 0.22 -4.26 16 15 C -0.20 -9.60 7.94 22.66 0.18 -9.42 16 16 C 0.05 2.60 5.43 -19.77 -0.11 2.50 16 17 C -0.47 -25.70 8.11 23.29 0.19 -25.51 16 18 H 0.10 5.98 5.74 -2.91 -0.02 5.96 16 19 C 0.00 0.23 4.94 85.27 0.42 0.65 16 20 N -0.78 -41.00 12.75 21.84 0.28 -40.72 16 21 Si 1.11 44.04 30.01 68.60 2.06 46.09 16 22 H -0.26 -9.74 7.11 99.48 0.71 -9.04 16 23 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 24 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 25 N -0.48 -19.84 3.23 -540.74 -1.75 -21.59 16 26 C 0.08 2.63 8.98 127.77 1.15 3.78 16 27 C 0.07 1.94 5.09 86.27 0.44 2.38 16 28 C -0.07 -1.42 6.05 29.76 0.18 -1.24 16 29 H 0.08 0.76 5.37 -2.39 -0.01 0.75 16 30 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.06 0.80 7.95 -2.39 -0.02 0.78 16 33 H 0.08 0.88 7.70 -2.39 -0.02 0.86 16 34 H 0.08 0.89 7.44 -2.39 -0.02 0.87 16 35 H 0.10 2.28 5.60 -2.39 -0.01 2.26 16 36 H 0.04 1.08 8.10 -2.39 -0.02 1.06 16 37 H 0.17 5.22 8.06 -2.91 -0.02 5.20 16 38 H 0.14 4.61 8.06 -2.91 -0.02 4.58 16 39 H 0.11 5.29 6.82 -2.91 -0.02 5.27 16 40 H 0.29 15.54 6.37 -92.70 -0.59 14.95 16 41 H 0.08 2.31 7.93 -2.39 -0.02 2.29 16 42 H 0.10 2.61 7.51 -2.39 -0.02 2.59 16 43 H 0.10 3.39 6.30 -2.39 -0.02 3.38 16 44 H 0.04 1.29 8.08 -2.39 -0.02 1.27 16 45 H 0.08 2.47 7.66 -2.39 -0.02 2.45 16 46 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 47 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -68.62 371.81 4.22 -64.41 By element: Atomic # 1 Polarization: 30.50 SS G_CDS: 1.18 Total: 31.67 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: 8.35 Total: -6.46 kcal Atomic # 7 Polarization: -128.34 SS G_CDS: -7.37 Total: -135.71 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.06 Total: 46.09 kcal Total: -68.62 4.22 -64.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355246989.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.969 kcal (2) G-P(sol) polarization free energy of solvation -68.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds