Wall clock time and date at job start Tue Mar 31 2020 23:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46908 * 110.99967 * 2 1 4 4 C 1.46900 * 110.99889 * 123.94885 * 2 1 3 5 5 C 1.53002 * 109.46993 * 66.05104 * 4 2 1 6 6 C 1.52997 * 109.47254 * 180.02562 * 5 4 2 7 7 N 1.46500 * 109.47110 * 180.02562 * 6 5 4 8 8 C 1.46499 * 120.00123 * 269.99619 * 7 6 5 9 9 C 1.50696 * 109.47242 * 270.00254 * 8 7 6 10 10 H 1.08004 * 119.99877 * 359.97438 * 9 8 7 11 11 C 1.37874 * 119.99951 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99785 * 179.97438 * 11 9 8 13 13 Si 1.86797 * 120.00290 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.47021 * 89.99598 * 13 11 9 15 15 H 1.48500 * 109.47423 * 210.00268 * 13 11 9 16 16 H 1.48504 * 109.47208 * 329.99930 * 13 11 9 17 17 C 1.34779 * 120.00165 * 89.99460 * 7 6 5 18 18 O 1.21282 * 119.99927 * 0.02562 * 17 7 6 19 19 C 1.50699 * 120.00033 * 179.97438 * 17 7 6 20 20 C 1.53006 * 109.46866 * 180.02562 * 19 17 7 21 21 C 1.52999 * 109.46623 * 179.97438 * 20 19 17 22 22 C 1.50706 * 109.46953 * 179.97438 * 21 20 19 23 23 N 1.29023 * 124.91439 * 89.69282 * 22 21 20 24 24 C 1.31791 * 117.12183 * 179.81407 * 23 22 21 25 25 C 1.33639 * 114.50015 * 0.47678 * 24 23 22 26 26 S 1.70978 * 124.91652 * 270.00326 * 22 21 20 27 27 H 1.08997 * 109.47613 * 296.05134 * 1 2 3 28 28 H 1.09001 * 109.46850 * 56.05036 * 1 2 3 29 29 H 1.09001 * 109.46641 * 176.04157 * 1 2 3 30 30 H 1.08997 * 109.47085 * 183.95003 * 3 2 1 31 31 H 1.08996 * 109.46814 * 303.95270 * 3 2 1 32 32 H 1.09004 * 109.46613 * 63.94837 * 3 2 1 33 33 H 1.09002 * 109.46921 * 306.05106 * 4 2 1 34 34 H 1.08993 * 109.47485 * 186.04965 * 4 2 1 35 35 H 1.08998 * 109.47164 * 59.99480 * 5 4 2 36 36 H 1.09005 * 109.46989 * 299.99874 * 5 4 2 37 37 H 1.08993 * 109.47244 * 59.99680 * 6 5 4 38 38 H 1.09005 * 109.46797 * 299.99718 * 6 5 4 39 39 H 1.09001 * 109.46572 * 30.00275 * 8 7 6 40 40 H 1.09003 * 109.47046 * 149.99648 * 8 7 6 41 41 H 0.97006 * 119.99757 * 179.97438 * 12 11 9 42 42 H 1.08993 * 109.47512 * 60.00410 * 19 17 7 43 43 H 1.09000 * 109.47247 * 300.00119 * 19 17 7 44 44 H 1.09000 * 109.47050 * 299.99952 * 20 19 17 45 45 H 1.09001 * 109.46801 * 60.00064 * 20 19 17 46 46 H 1.09000 * 109.47486 * 299.99829 * 21 20 19 47 47 H 1.09001 * 109.47362 * 60.00551 * 21 20 19 48 48 H 1.08005 * 122.74534 * 180.22834 * 24 23 22 49 49 H 1.07999 * 126.03399 * 179.71642 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 1.6315 -2.2426 0.9704 6 6 2.1792 -3.0402 2.1556 7 7 1.8313 -4.4542 1.9952 8 6 0.5744 -4.9664 2.5466 9 6 0.8022 -5.4428 3.9580 10 1 1.7851 -5.3716 4.3999 11 6 -0.2441 -5.9696 4.6851 12 7 -0.0451 -6.3858 5.9167 13 14 -1.9442 -6.0922 3.9210 14 1 -2.0861 -7.4025 3.2367 15 1 -2.9744 -5.9747 4.9841 16 1 -2.1238 -4.9967 2.9346 17 6 2.6675 -5.2839 1.3402 18 8 3.7082 -4.8599 0.8841 19 6 2.3098 -6.7385 1.1757 20 6 3.4202 -7.4524 0.4020 21 6 3.0573 -8.9293 0.2356 22 6 4.1507 -9.6324 -0.5270 23 7 5.1805 -10.1952 0.0091 24 6 6.0425 -10.7708 -0.8049 25 6 5.7269 -10.6800 -2.1004 26 16 4.2099 -9.7930 -2.2281 27 1 -0.3634 0.4513 0.9232 28 1 -0.3633 0.5739 -0.8525 29 1 -0.3633 -1.0253 -0.0709 30 1 3.0828 1.3433 -0.0708 31 1 1.5898 1.9163 -0.8524 32 1 1.7043 1.8724 0.9233 33 1 1.5610 -0.3871 2.0628 34 1 3.0796 -0.6610 1.1758 35 1 2.0659 -2.6213 0.0453 36 1 0.5472 -2.3475 0.9324 37 1 1.7445 -2.6613 3.0805 38 1 3.2635 -2.9353 2.1941 39 1 -0.1724 -4.1724 2.5471 40 1 0.2211 -5.7969 1.9352 41 1 -0.7814 -6.7561 6.4284 42 1 1.3722 -6.8223 0.6263 43 1 2.1980 -7.1985 2.1575 44 1 3.5324 -6.9925 -0.5798 45 1 4.3577 -7.3686 0.9518 46 1 2.9454 -9.3889 1.2176 47 1 2.1198 -9.0135 -0.3140 48 1 6.9330 -11.2710 -0.4541 49 1 6.3008 -11.0793 -2.9235 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361681285.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:06 Heat of formation + Delta-G solvation = 0.187505 kcal Electronic energy + Delta-G solvation = -26874.005232 eV Core-core repulsion = 23155.689542 eV Total energy + Delta-G solvation = -3718.315689 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.73265 -39.27541 -37.64550 -35.43647 -34.67066 -32.86961 -31.76460 -30.56831 -28.09411 -27.93964 -27.63150 -25.93818 -24.32501 -22.73903 -22.59165 -21.35784 -20.63468 -19.93668 -18.37108 -17.87862 -17.07327 -16.40954 -15.84348 -15.62014 -15.43011 -15.37284 -14.95705 -14.72871 -14.51141 -14.33276 -13.93580 -13.86807 -13.63089 -13.08396 -12.90964 -12.50262 -12.45429 -12.23975 -12.01504 -11.96948 -11.81638 -11.70744 -11.59862 -11.50506 -11.28355 -11.26364 -11.08359 -10.88688 -10.70349 -10.46307 -10.31751 -10.19334 -9.66157 -9.64062 -9.47160 -9.09406 -8.92461 -8.74313 -8.39390 -7.75750 -6.23499 -4.25461 0.64022 1.29345 1.68075 2.78669 3.14770 3.22812 3.24552 3.37031 3.71686 4.02087 4.15534 4.24092 4.92158 5.02738 5.04510 5.05976 5.09459 5.09972 5.20172 5.25291 5.33486 5.39516 5.49179 5.52639 5.58150 5.63503 5.64583 5.72461 5.75091 5.79203 5.85447 5.90397 5.95327 6.08265 6.12166 6.13509 6.41052 6.45066 6.47788 6.56479 6.59120 6.67119 6.99048 7.01452 7.34670 7.42856 7.70355 8.12987 8.40152 8.81656 8.95219 9.35782 10.89121 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007373 B = 0.003097 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3796.730719 B = 9040.161199 C =11906.449287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.549 5.549 3 C 0.025 3.975 4 C 0.058 3.942 5 C -0.128 4.128 6 C 0.122 3.878 7 N -0.591 5.591 8 C 0.209 3.791 9 C -0.542 4.542 10 H 0.078 0.922 11 C 0.077 3.923 12 N -0.890 5.890 13 Si 0.870 3.130 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.265 1.265 17 C 0.520 3.480 18 O -0.570 6.570 19 C -0.138 4.138 20 C -0.093 4.093 21 C -0.050 4.050 22 C 0.069 3.931 23 N -0.477 5.477 24 C 0.041 3.959 25 C -0.270 4.270 26 S 0.111 5.889 27 H 0.025 0.975 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.023 0.977 33 H 0.035 0.965 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.032 0.968 40 H 0.031 0.969 41 H 0.266 0.734 42 H 0.088 0.912 43 H 0.110 0.890 44 H 0.067 0.933 45 H 0.075 0.925 46 H 0.101 0.899 47 H 0.087 0.913 48 H 0.174 0.826 49 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.565 0.817 -15.476 15.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.272 5.272 3 C -0.123 4.123 4 C -0.070 4.070 5 C -0.167 4.167 6 C -0.002 4.002 7 N -0.321 5.321 8 C 0.088 3.912 9 C -0.580 4.580 10 H 0.096 0.904 11 C -0.127 4.127 12 N -0.527 5.527 13 Si 0.697 3.303 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.189 1.189 17 C 0.309 3.691 18 O -0.451 6.451 19 C -0.178 4.178 20 C -0.132 4.132 21 C -0.091 4.091 22 C -0.209 4.209 23 N -0.191 5.191 24 C -0.110 4.110 25 C -0.410 4.410 26 S 0.365 5.635 27 H 0.043 0.957 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.042 0.958 33 H 0.054 0.946 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.050 0.950 40 H 0.048 0.952 41 H 0.076 0.924 42 H 0.106 0.894 43 H 0.128 0.872 44 H 0.086 0.914 45 H 0.094 0.906 46 H 0.119 0.881 47 H 0.105 0.895 48 H 0.191 0.809 49 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 3.570 1.049 -16.210 16.632 hybrid contribution -0.507 -0.232 0.906 1.064 sum 3.063 0.817 -15.304 15.629 Atomic orbital electron populations 1.22437 0.87515 1.02631 1.00127 1.61981 1.08019 1.13480 1.43763 1.22368 1.00778 0.89000 1.00197 1.22083 1.00196 0.93843 0.90891 1.21949 1.01271 0.93394 1.00127 1.21207 1.00780 0.80937 0.97303 1.47880 1.22075 1.08131 1.53977 1.19798 0.81635 0.94836 0.94949 1.21394 0.98392 1.41838 0.96388 0.90356 1.24879 0.98639 0.94544 0.94628 1.69896 1.32487 1.40937 1.09413 0.86943 0.84603 0.79262 0.79522 1.19753 1.20941 1.18921 1.20446 0.83183 0.88212 0.77304 1.90607 1.25320 1.78196 1.50941 1.21636 0.99299 0.93102 1.03717 1.21295 0.99386 0.91250 1.01302 1.20430 0.92809 0.95345 1.00493 1.27253 0.98646 1.00584 0.94394 1.66308 1.02787 1.11470 1.38520 1.21842 1.00107 1.00511 0.88505 1.27030 1.02093 1.10019 1.01819 1.84030 1.19906 1.50486 1.09057 0.95654 0.91757 0.90883 0.91393 0.91629 0.95802 0.94631 0.90646 0.91004 0.91970 0.90500 0.90746 0.95032 0.95158 0.92352 0.89387 0.87178 0.91433 0.90629 0.88114 0.89464 0.80898 0.80805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.32 60.07 0.56 0.80 16 2 N -0.55 -6.87 5.02 -251.25 -1.26 -8.13 16 3 C 0.02 0.25 9.57 60.07 0.57 0.83 16 4 C 0.06 0.77 4.96 -3.82 -0.02 0.75 16 5 C -0.13 -1.96 5.46 -26.73 -0.15 -2.11 16 6 C 0.12 2.16 5.41 -4.04 -0.02 2.14 16 7 N -0.59 -11.73 2.46 -175.06 -0.43 -12.16 16 8 C 0.21 4.44 4.03 -5.20 -0.02 4.42 16 9 C -0.54 -13.87 9.83 -34.44 -0.34 -14.21 16 10 H 0.08 2.27 8.06 -52.48 -0.42 1.85 16 11 C 0.08 2.02 5.47 -17.82 -0.10 1.92 16 12 N -0.89 -25.43 13.96 55.43 0.77 -24.65 16 13 Si 0.87 19.23 27.47 -169.99 -4.67 14.56 16 14 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 15 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 16 H -0.26 -5.52 6.54 56.52 0.37 -5.15 16 17 C 0.52 10.28 7.67 -10.99 -0.08 10.20 16 18 O -0.57 -12.40 15.56 5.56 0.09 -12.31 16 19 C -0.14 -2.29 4.25 -27.88 -0.12 -2.41 16 20 C -0.09 -1.39 4.49 -26.73 -0.12 -1.51 16 21 C -0.05 -0.63 5.80 -27.88 -0.16 -0.79 16 22 C 0.07 0.91 6.64 -13.45 -0.09 0.82 16 23 N -0.48 -6.83 10.54 -11.86 -0.13 -6.96 16 24 C 0.04 0.48 11.35 -19.18 -0.22 0.26 16 25 C -0.27 -2.66 11.37 29.12 0.33 -2.33 16 26 S 0.11 1.19 23.18 -107.50 -2.49 -1.30 16 27 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 29 H 0.07 0.86 6.47 -51.93 -0.34 0.53 16 30 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 31 H 0.06 0.58 8.12 -51.93 -0.42 0.16 16 32 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.04 0.46 8.12 -51.93 -0.42 0.04 16 34 H 0.08 0.98 8.06 -51.93 -0.42 0.56 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.06 0.95 6.55 -51.93 -0.34 0.61 16 37 H 0.08 1.36 8.07 -51.93 -0.42 0.95 16 38 H 0.07 1.36 7.42 -51.93 -0.39 0.97 16 39 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 40 H 0.03 0.61 5.87 -51.93 -0.30 0.30 16 41 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.09 1.29 7.40 -51.93 -0.38 0.90 16 43 H 0.11 1.98 8.00 -51.93 -0.42 1.57 16 44 H 0.07 1.00 8.10 -51.93 -0.42 0.58 16 45 H 0.07 1.28 8.10 -51.93 -0.42 0.86 16 46 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 47 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 48 H 0.17 1.51 8.06 -52.48 -0.42 1.09 16 49 H 0.17 1.18 8.06 -52.49 -0.42 0.75 16 LS Contribution 411.41 15.07 6.20 6.20 Total: -1.00 -31.13 411.41 -10.34 -41.47 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -8.45 Total: 4.51 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: 0.03 Total: -1.23 kcal Atomic # 7 Polarization: -50.85 SS G_CDS: -1.04 Total: -51.90 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: 0.09 Total: -12.31 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -4.67 Total: 14.56 kcal Atomic # 16 Polarization: 1.19 SS G_CDS: -2.49 Total: -1.30 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -31.13 -10.34 -41.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361681285.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.657 kcal (2) G-P(sol) polarization free energy of solvation -31.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds