Wall clock time and date at job start Tue Mar 31 2020 23:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46908 * 110.99967 * 2 1 4 4 C 1.46900 * 110.99889 * 123.94885 * 2 1 3 5 5 C 1.53002 * 109.46993 * 66.05104 * 4 2 1 6 6 C 1.52997 * 109.47254 * 180.02562 * 5 4 2 7 7 N 1.46500 * 109.47110 * 180.02562 * 6 5 4 8 8 C 1.46499 * 120.00123 * 269.99619 * 7 6 5 9 9 C 1.50696 * 109.47242 * 270.00254 * 8 7 6 10 10 H 1.08004 * 119.99877 * 359.97438 * 9 8 7 11 11 C 1.37874 * 119.99951 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99785 * 179.97438 * 11 9 8 13 13 Si 1.86797 * 120.00290 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.47021 * 89.99598 * 13 11 9 15 15 H 1.48500 * 109.47423 * 210.00268 * 13 11 9 16 16 H 1.48504 * 109.47208 * 329.99930 * 13 11 9 17 17 C 1.34779 * 120.00165 * 89.99460 * 7 6 5 18 18 O 1.21282 * 119.99927 * 0.02562 * 17 7 6 19 19 C 1.50699 * 120.00033 * 179.97438 * 17 7 6 20 20 C 1.53006 * 109.46866 * 180.02562 * 19 17 7 21 21 C 1.52999 * 109.46623 * 179.97438 * 20 19 17 22 22 C 1.50706 * 109.46953 * 179.97438 * 21 20 19 23 23 N 1.29023 * 124.91439 * 89.69282 * 22 21 20 24 24 C 1.31791 * 117.12183 * 179.81407 * 23 22 21 25 25 C 1.33639 * 114.50015 * 0.47678 * 24 23 22 26 26 S 1.70978 * 124.91652 * 270.00326 * 22 21 20 27 27 H 1.08997 * 109.47613 * 296.05134 * 1 2 3 28 28 H 1.09001 * 109.46850 * 56.05036 * 1 2 3 29 29 H 1.09001 * 109.46641 * 176.04157 * 1 2 3 30 30 H 1.08997 * 109.47085 * 183.95003 * 3 2 1 31 31 H 1.08996 * 109.46814 * 303.95270 * 3 2 1 32 32 H 1.09004 * 109.46613 * 63.94837 * 3 2 1 33 33 H 1.09002 * 109.46921 * 306.05106 * 4 2 1 34 34 H 1.08993 * 109.47485 * 186.04965 * 4 2 1 35 35 H 1.08998 * 109.47164 * 59.99480 * 5 4 2 36 36 H 1.09005 * 109.46989 * 299.99874 * 5 4 2 37 37 H 1.08993 * 109.47244 * 59.99680 * 6 5 4 38 38 H 1.09005 * 109.46797 * 299.99718 * 6 5 4 39 39 H 1.09001 * 109.46572 * 30.00275 * 8 7 6 40 40 H 1.09003 * 109.47046 * 149.99648 * 8 7 6 41 41 H 0.97006 * 119.99757 * 179.97438 * 12 11 9 42 42 H 1.08993 * 109.47512 * 60.00410 * 19 17 7 43 43 H 1.09000 * 109.47247 * 300.00119 * 19 17 7 44 44 H 1.09000 * 109.47050 * 299.99952 * 20 19 17 45 45 H 1.09001 * 109.46801 * 60.00064 * 20 19 17 46 46 H 1.09000 * 109.47486 * 299.99829 * 21 20 19 47 47 H 1.09001 * 109.47362 * 60.00551 * 21 20 19 48 48 H 1.08005 * 122.74534 * 180.22834 * 24 23 22 49 49 H 1.07999 * 126.03399 * 179.71642 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 1.6315 -2.2426 0.9704 6 6 2.1792 -3.0402 2.1556 7 7 1.8313 -4.4542 1.9952 8 6 0.5744 -4.9664 2.5466 9 6 0.8022 -5.4428 3.9580 10 1 1.7851 -5.3716 4.3999 11 6 -0.2441 -5.9696 4.6851 12 7 -0.0451 -6.3858 5.9167 13 14 -1.9442 -6.0922 3.9210 14 1 -2.0861 -7.4025 3.2367 15 1 -2.9744 -5.9747 4.9841 16 1 -2.1238 -4.9967 2.9346 17 6 2.6675 -5.2839 1.3402 18 8 3.7082 -4.8599 0.8841 19 6 2.3098 -6.7385 1.1757 20 6 3.4202 -7.4524 0.4020 21 6 3.0573 -8.9293 0.2356 22 6 4.1507 -9.6324 -0.5270 23 7 5.1805 -10.1952 0.0091 24 6 6.0425 -10.7708 -0.8049 25 6 5.7269 -10.6800 -2.1004 26 16 4.2099 -9.7930 -2.2281 27 1 -0.3634 0.4513 0.9232 28 1 -0.3633 0.5739 -0.8525 29 1 -0.3633 -1.0253 -0.0709 30 1 3.0828 1.3433 -0.0708 31 1 1.5898 1.9163 -0.8524 32 1 1.7043 1.8724 0.9233 33 1 1.5610 -0.3871 2.0628 34 1 3.0796 -0.6610 1.1758 35 1 2.0659 -2.6213 0.0453 36 1 0.5472 -2.3475 0.9324 37 1 1.7445 -2.6613 3.0805 38 1 3.2635 -2.9353 2.1941 39 1 -0.1724 -4.1724 2.5471 40 1 0.2211 -5.7969 1.9352 41 1 -0.7814 -6.7561 6.4284 42 1 1.3722 -6.8223 0.6263 43 1 2.1980 -7.1985 2.1575 44 1 3.5324 -6.9925 -0.5798 45 1 4.3577 -7.3686 0.9518 46 1 2.9454 -9.3889 1.2176 47 1 2.1198 -9.0135 -0.3140 48 1 6.9330 -11.2710 -0.4541 49 1 6.3008 -11.0793 -2.9235 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361681285.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:05 Heat of formation + Delta-G solvation = -19.390518 kcal Electronic energy + Delta-G solvation = -26874.854199 eV Core-core repulsion = 23155.689542 eV Total energy + Delta-G solvation = -3719.164656 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.93403 -40.54480 -38.67181 -36.95348 -35.94105 -34.69007 -33.20701 -31.62060 -29.79374 -29.09953 -28.47929 -27.13145 -25.36777 -24.43019 -23.81874 -22.54208 -21.76768 -20.84243 -19.83687 -19.04178 -18.90883 -17.89789 -17.24313 -16.80103 -16.51799 -16.46249 -16.07200 -16.02668 -15.69201 -15.51726 -15.18242 -15.00698 -14.83693 -14.52851 -14.15024 -14.04862 -13.72399 -13.40855 -13.24731 -13.22536 -12.98686 -12.78934 -12.67752 -12.60750 -12.53367 -12.43582 -12.38856 -12.29242 -12.21999 -11.96943 -11.71011 -11.66918 -11.48711 -10.79833 -10.67199 -10.55453 -10.34073 -9.79282 -9.42080 -9.32045 -8.26709 -6.34812 -0.22928 0.45457 0.82778 1.43809 1.45347 1.54813 1.77976 1.88956 2.28247 2.37876 3.04041 3.07905 3.22696 3.70644 3.91157 3.94025 4.06933 4.13712 4.22995 4.30868 4.36085 4.40809 4.43895 4.49378 4.53096 4.57895 4.61400 4.62237 4.66305 4.68294 4.75475 4.78143 4.80143 4.90965 4.93815 5.00086 5.02130 5.15312 5.16522 5.25475 5.27250 5.32743 5.47982 5.73966 6.04617 6.11144 6.21485 6.64263 6.72993 6.83556 7.26860 7.38777 8.89773 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007373 B = 0.003097 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3796.730719 B = 9040.161199 C =11906.449287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.564 5.564 3 C 0.024 3.976 4 C 0.063 3.937 5 C -0.110 4.110 6 C 0.119 3.881 7 N -0.597 5.597 8 C 0.218 3.782 9 C -0.542 4.542 10 H 0.026 0.974 11 C 0.019 3.981 12 N -0.945 5.945 13 Si 0.941 3.059 14 H -0.256 1.256 15 H -0.290 1.290 16 H -0.237 1.237 17 C 0.511 3.489 18 O -0.594 6.594 19 C -0.133 4.133 20 C -0.080 4.080 21 C -0.044 4.044 22 C 0.037 3.963 23 N -0.513 5.513 24 C 0.016 3.984 25 C -0.255 4.255 26 S 0.146 5.854 27 H 0.027 0.973 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.028 0.972 33 H 0.039 0.961 34 H 0.074 0.926 35 H 0.056 0.944 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.044 0.956 40 H 0.054 0.946 41 H 0.268 0.732 42 H 0.118 0.882 43 H 0.093 0.907 44 H 0.070 0.930 45 H 0.045 0.955 46 H 0.090 0.910 47 H 0.114 0.886 48 H 0.193 0.807 49 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.876 0.933 -18.593 18.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.288 5.288 3 C -0.123 4.123 4 C -0.065 4.065 5 C -0.149 4.149 6 C -0.004 4.004 7 N -0.326 5.326 8 C 0.096 3.904 9 C -0.580 4.580 10 H 0.044 0.956 11 C -0.180 4.180 12 N -0.584 5.584 13 Si 0.764 3.236 14 H -0.181 1.181 15 H -0.216 1.216 16 H -0.160 1.160 17 C 0.301 3.699 18 O -0.476 6.476 19 C -0.172 4.172 20 C -0.119 4.119 21 C -0.085 4.085 22 C -0.240 4.240 23 N -0.228 5.228 24 C -0.134 4.134 25 C -0.394 4.394 26 S 0.400 5.600 27 H 0.046 0.954 28 H 0.099 0.901 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.047 0.953 33 H 0.057 0.943 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.062 0.938 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.136 0.864 43 H 0.111 0.889 44 H 0.088 0.912 45 H 0.064 0.936 46 H 0.108 0.892 47 H 0.133 0.867 48 H 0.210 0.790 49 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 1.892 1.188 -19.348 19.476 hybrid contribution 0.178 -0.248 1.882 1.907 sum 2.070 0.940 -17.466 17.613 Atomic orbital electron populations 1.22469 0.86734 1.02512 1.01017 1.61972 1.08895 1.14789 1.43133 1.22424 1.00973 0.87829 1.01109 1.21969 1.00274 0.92660 0.91615 1.21736 1.01084 0.94279 0.97843 1.21290 1.00179 0.80511 0.98443 1.47983 1.21878 1.09038 1.53713 1.19657 0.82391 0.95791 0.92530 1.21529 0.96201 1.41710 0.98579 0.95586 1.25814 1.03454 0.93888 0.94827 1.70072 1.34070 1.42719 1.11546 0.85810 0.78091 0.80784 0.78962 1.18062 1.21583 1.15983 1.21031 0.82724 0.89387 0.76757 1.90586 1.26181 1.78874 1.52003 1.21649 1.01278 0.90816 1.03479 1.21126 0.97360 0.92976 1.00464 1.20351 0.94126 0.93320 1.00690 1.27249 0.98847 1.01759 0.96147 1.66295 1.03720 1.12327 1.40494 1.22204 1.00738 1.01368 0.89129 1.27484 1.01523 1.08249 1.02171 1.83831 1.20012 1.49745 1.06432 0.95405 0.90100 0.91630 0.91210 0.90125 0.95325 0.94274 0.90747 0.92504 0.91488 0.90899 0.91988 0.93767 0.92793 0.92344 0.86422 0.88871 0.91151 0.93646 0.89167 0.86742 0.79041 0.77471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.32 127.69 1.19 1.61 16 2 N -0.56 -13.15 5.02 -948.82 -4.76 -17.91 16 3 C 0.02 0.45 9.57 127.69 1.22 1.67 16 4 C 0.06 1.62 4.96 86.30 0.43 2.05 16 5 C -0.11 -3.30 5.46 30.59 0.17 -3.14 16 6 C 0.12 4.29 5.41 86.38 0.47 4.76 16 7 N -0.60 -23.77 2.46 -826.16 -2.03 -25.80 16 8 C 0.22 9.01 4.03 85.63 0.35 9.36 16 9 C -0.54 -28.32 9.83 25.60 0.25 -28.07 16 10 H 0.03 1.59 8.06 -2.91 -0.02 1.57 16 11 C 0.02 1.00 5.47 84.65 0.46 1.46 16 12 N -0.94 -55.60 13.96 21.45 0.30 -55.30 16 13 Si 0.94 38.48 27.47 68.60 1.88 40.36 16 14 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 15 H -0.29 -12.11 7.11 99.48 0.71 -11.41 16 16 H -0.24 -8.57 6.54 99.48 0.65 -7.92 16 17 C 0.51 20.45 7.67 87.66 0.67 21.13 16 18 O -0.59 -26.47 15.56 -3.04 -0.05 -26.51 16 19 C -0.13 -4.38 4.25 29.85 0.13 -4.26 16 20 C -0.08 -2.40 4.49 30.60 0.14 -2.26 16 21 C -0.04 -1.10 5.80 29.85 0.17 -0.93 16 22 C 0.04 0.95 6.64 88.52 0.59 1.54 16 23 N -0.51 -14.72 10.54 -191.43 -2.02 -16.74 16 24 C 0.02 0.34 11.35 83.65 0.95 1.29 16 25 C -0.26 -4.41 11.37 66.78 0.76 -3.65 16 26 S 0.15 2.83 23.18 -56.49 -1.31 1.52 16 27 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.08 1.36 8.12 -2.39 -0.02 1.34 16 29 H 0.06 1.42 6.47 -2.39 -0.02 1.40 16 30 H 0.07 1.23 8.12 -2.39 -0.02 1.21 16 31 H 0.08 1.22 8.12 -2.39 -0.02 1.20 16 32 H 0.03 0.49 8.14 -2.38 -0.02 0.47 16 33 H 0.04 0.97 8.12 -2.39 -0.02 0.95 16 34 H 0.07 1.90 8.06 -2.39 -0.02 1.88 16 35 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.07 1.94 6.55 -2.38 -0.02 1.92 16 37 H 0.07 2.64 8.07 -2.39 -0.02 2.62 16 38 H 0.06 2.36 7.42 -2.38 -0.02 2.34 16 39 H 0.04 1.75 7.13 -2.39 -0.02 1.73 16 40 H 0.05 2.01 5.87 -2.39 -0.01 2.00 16 41 H 0.27 14.73 8.31 -92.70 -0.77 13.96 16 42 H 0.12 3.17 7.40 -2.39 -0.02 3.15 16 43 H 0.09 3.44 8.00 -2.39 -0.02 3.42 16 44 H 0.07 2.06 8.10 -2.39 -0.02 2.04 16 45 H 0.04 1.62 8.10 -2.39 -0.02 1.60 16 46 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 47 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 48 H 0.19 3.16 8.06 -2.91 -0.02 3.14 16 49 H 0.21 2.03 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -70.23 411.41 0.81 -69.42 By element: Atomic # 1 Polarization: 27.56 SS G_CDS: 0.86 Total: 28.41 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: 7.94 Total: 2.55 kcal Atomic # 7 Polarization: -107.24 SS G_CDS: -8.51 Total: -115.75 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: -0.05 Total: -26.51 kcal Atomic # 14 Polarization: 38.48 SS G_CDS: 1.88 Total: 40.36 kcal Atomic # 16 Polarization: 2.83 SS G_CDS: -1.31 Total: 1.52 kcal Total: -70.23 0.81 -69.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361681285.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.028 kcal (2) G-P(sol) polarization free energy of solvation -70.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds