Wall clock time and date at job start Tue Mar 31 2020 22:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47269 * 2 1 4 4 C 1.50694 * 109.46887 * 120.00636 * 2 1 3 5 5 H 1.08000 * 120.00325 * 119.99709 * 4 2 1 6 6 C 1.37885 * 119.99814 * 299.99307 * 4 2 1 7 7 N 1.31515 * 119.99642 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 119.99987 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47399 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46740 * 120.00551 * 8 6 4 11 11 H 1.48500 * 109.47221 * 240.00190 * 8 6 4 12 12 C 1.50704 * 109.46734 * 239.99972 * 2 1 3 13 13 O 1.21284 * 120.00124 * 274.93989 * 12 2 1 14 14 N 1.34780 * 119.99765 * 94.93960 * 12 2 1 15 15 C 1.48088 * 127.85030 * 354.87853 * 14 12 2 16 16 C 1.54272 * 104.76216 * 219.85321 * 15 14 12 17 17 H 1.09005 * 112.68430 * 99.71585 * 16 15 14 18 18 C 1.54389 * 108.77656 * 225.44495 * 16 15 14 19 19 O 1.44374 * 104.92031 * 87.01751 * 18 16 15 20 20 C 1.44384 * 105.25658 * 40.76647 * 19 18 16 21 21 C 1.54389 * 104.92179 * 319.23891 * 20 19 18 22 22 C 1.50701 * 112.70833 * 146.57502 * 21 20 19 23 23 O 1.20833 * 119.99483 * 242.72068 * 22 21 20 24 24 O 1.34220 * 120.00217 * 62.71936 * 22 21 20 25 25 C 1.45208 * 117.00135 * 179.97438 * 24 22 21 26 26 C 1.52999 * 109.46585 * 59.99915 * 25 24 22 27 27 C 1.53002 * 109.47165 * 179.97438 * 25 24 22 28 28 C 1.52997 * 109.46888 * 299.99898 * 25 24 22 29 29 C 1.48095 * 127.84816 * 174.83094 * 14 12 2 30 30 H 1.09002 * 109.47033 * 305.26394 * 1 2 3 31 31 H 1.09003 * 109.47040 * 65.25690 * 1 2 3 32 32 H 1.08997 * 109.47562 * 185.26186 * 1 2 3 33 33 H 0.97003 * 119.99433 * 180.02562 * 7 6 4 34 34 H 1.08995 * 110.37932 * 101.03387 * 15 14 12 35 35 H 1.09003 * 110.38127 * 338.67539 * 15 14 12 36 36 H 1.09001 * 110.35153 * 205.88489 * 18 16 15 37 37 H 1.08999 * 110.34762 * 328.04912 * 18 16 15 38 38 H 1.08999 * 110.35158 * 78.10027 * 20 19 18 39 39 H 1.09002 * 110.34836 * 200.26495 * 20 19 18 40 40 H 1.08997 * 109.47355 * 60.00805 * 26 25 24 41 41 H 1.09006 * 109.46588 * 180.02562 * 26 25 24 42 42 H 1.09000 * 109.47511 * 299.99707 * 26 25 24 43 43 H 1.08998 * 109.47058 * 59.99866 * 27 25 24 44 44 H 1.09001 * 109.46629 * 180.02562 * 27 25 24 45 45 H 1.08994 * 109.47096 * 300.00218 * 27 25 24 46 46 H 1.09000 * 109.47270 * 60.00255 * 28 25 24 47 47 H 1.09001 * 109.47034 * 179.97438 * 28 25 24 48 48 H 1.08998 * 109.47160 * 300.00027 * 28 25 24 49 49 H 1.09007 * 110.37713 * 21.32480 * 29 14 12 50 50 H 1.08992 * 110.47538 * 259.02326 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5887 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9429 0.8296 2.6033 8 14 2.3224 -1.1197 4.0078 9 1 3.1482 -2.2859 3.6037 10 1 3.1472 -0.1859 4.8160 11 1 1.1677 -1.5868 4.8164 12 6 2.0323 -0.7104 -1.2305 13 8 2.1491 -1.9176 -1.2286 14 7 2.3516 -0.0042 -2.3332 15 6 2.1800 1.4486 -2.5631 16 6 1.7080 1.5617 -4.0275 17 1 0.6297 1.6974 -4.1123 18 6 2.5065 2.6862 -4.7215 19 8 3.7037 2.0444 -5.2107 20 6 3.2669 0.7695 -5.7287 21 6 2.2231 0.2630 -4.7101 22 6 1.1205 -0.5362 -5.3555 23 8 -0.0206 -0.1421 -5.3047 24 8 1.4060 -1.6858 -5.9867 25 6 0.2942 -2.4032 -6.5848 26 6 -0.3810 -1.5157 -7.6323 27 6 0.8110 -3.6784 -7.2541 28 6 -0.7186 -2.7712 -5.4987 29 6 2.9548 -0.5048 -3.5897 30 1 -0.3633 0.5933 0.8391 31 1 -0.3633 0.4301 -0.9333 32 1 -0.3634 -1.0233 0.0942 33 1 0.7089 1.1612 3.4844 34 1 3.1283 1.9688 -2.4287 35 1 1.4252 1.8531 -1.8887 36 1 1.9335 3.1020 -5.5503 37 1 2.7592 3.4687 -4.0061 38 1 2.8089 0.8958 -6.7097 39 1 4.1066 0.0772 -5.7896 40 1 0.3406 -1.2536 -8.4061 41 1 -1.2159 -2.0541 -8.0810 42 1 -0.7491 -0.6070 -7.1559 43 1 1.2923 -4.3108 -6.5081 44 1 -0.0236 -4.2166 -7.7034 45 1 1.5323 -3.4159 -8.0278 46 1 -1.0867 -1.8626 -5.0223 47 1 -1.5534 -3.3094 -5.9477 48 1 -0.2375 -3.4034 -4.7525 49 1 2.7856 -1.5768 -3.6912 50 1 4.0222 -0.2858 -3.6140 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434157310.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:38 Heat of formation + Delta-G solvation = -159.760338 kcal Electronic energy + Delta-G solvation = -32150.136830 eV Core-core repulsion = 27949.839660 eV Total energy + Delta-G solvation = -4200.297170 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.61387 -40.13767 -38.42399 -37.07629 -35.73261 -34.30547 -33.75336 -31.74413 -30.96274 -30.27692 -27.64369 -27.55416 -26.27552 -25.48984 -25.19509 -24.24550 -22.36269 -21.83918 -20.41381 -19.30175 -18.68803 -17.70226 -16.78475 -16.42029 -16.28561 -15.99506 -15.78737 -15.67953 -15.32919 -14.86715 -14.61724 -14.35848 -14.30062 -13.86899 -13.66431 -13.23661 -12.78990 -12.71892 -12.65904 -12.47273 -12.28810 -12.19966 -12.17094 -12.09088 -11.99639 -11.62702 -11.49337 -11.43707 -11.25449 -11.11827 -11.02233 -10.96582 -10.70509 -10.65199 -10.55334 -10.29046 -10.13064 -10.05452 -9.98087 -9.01437 -8.65616 -8.36287 -8.24395 -6.06400 -4.09846 2.04110 2.40738 3.30586 3.37744 3.41692 3.48852 3.61422 3.75636 3.86428 4.31758 4.45641 4.47425 4.53762 4.55144 4.61174 4.70232 4.85001 4.87189 5.23313 5.24853 5.27101 5.30212 5.35142 5.38495 5.44754 5.48197 5.51979 5.53241 5.62030 5.63576 5.66846 5.78625 5.80521 5.88954 5.99638 6.01483 6.09596 6.17610 6.37967 6.46863 6.61833 6.74259 6.85898 6.98729 7.45691 7.67905 7.74051 7.96010 8.09924 8.35083 8.94217 9.13946 9.54729 11.01322 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.013579 B = 0.003584 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.568436 B = 7810.428439 C = 8901.776880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.038 3.962 3 H 0.045 0.955 4 C -0.501 4.501 5 H 0.067 0.933 6 C 0.061 3.939 7 N -0.893 5.893 8 Si 0.900 3.100 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.546 3.454 13 O -0.544 6.544 14 N -0.634 5.634 15 C 0.112 3.888 16 C -0.122 4.122 17 H 0.120 0.880 18 C 0.051 3.949 19 O -0.361 6.361 20 C 0.069 3.931 21 C -0.107 4.107 22 C 0.494 3.506 23 O -0.492 6.492 24 O -0.345 6.345 25 C 0.117 3.883 26 C -0.182 4.182 27 C -0.140 4.140 28 C -0.185 4.185 29 C 0.121 3.879 30 H 0.091 0.909 31 H 0.010 0.990 32 H 0.036 0.964 33 H 0.261 0.739 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.065 0.935 37 H 0.105 0.895 38 H 0.065 0.935 39 H 0.109 0.891 40 H 0.060 0.940 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.069 0.931 44 H 0.078 0.922 45 H 0.066 0.934 46 H 0.083 0.917 47 H 0.071 0.929 48 H 0.065 0.935 49 H 0.087 0.913 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.252 1.142 -21.963 21.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.017 3.983 3 H 0.063 0.937 4 C -0.539 4.539 5 H 0.085 0.915 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.728 3.272 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.209 1.209 12 C 0.339 3.661 13 O -0.419 6.419 14 N -0.370 5.370 15 C -0.012 4.012 16 C -0.141 4.141 17 H 0.138 0.862 18 C -0.026 4.026 19 O -0.280 6.280 20 C -0.008 4.008 21 C -0.109 4.109 22 C 0.336 3.664 23 O -0.379 6.379 24 O -0.263 6.263 25 C 0.081 3.919 26 C -0.239 4.239 27 C -0.197 4.197 28 C -0.242 4.242 29 C -0.002 4.002 30 H 0.110 0.890 31 H 0.029 0.971 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.095 0.905 35 H 0.111 0.889 36 H 0.083 0.917 37 H 0.124 0.876 38 H 0.083 0.917 39 H 0.127 0.873 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.101 0.899 43 H 0.088 0.912 44 H 0.097 0.903 45 H 0.085 0.915 46 H 0.102 0.898 47 H 0.090 0.910 48 H 0.084 0.916 49 H 0.106 0.894 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.063 0.670 -21.673 21.683 hybrid contribution -0.145 -0.518 0.714 0.894 sum -0.082 0.152 -20.959 20.959 Atomic orbital electron populations 1.21675 0.96014 1.00985 0.99782 1.18868 0.94306 0.96561 0.88577 0.93661 1.21041 1.31428 1.12417 0.89041 0.91480 1.24923 0.95002 0.95019 0.99045 1.69890 1.36830 1.22967 1.23532 0.86393 0.78677 0.79741 0.82431 1.19594 1.20968 1.20920 1.21914 0.74200 0.87412 0.82556 1.90550 1.53698 1.14949 1.82742 1.49364 1.64483 1.08586 1.14603 1.22390 1.01832 0.83063 0.93878 1.23638 1.02780 0.91701 0.96003 0.86240 1.23517 0.85807 0.95166 0.98099 1.89170 1.29308 1.29740 1.79740 1.23291 0.96650 0.86289 0.94586 1.22723 0.94339 0.96303 0.97545 1.22591 0.89218 0.79423 0.75154 1.90567 1.22084 1.69306 1.55977 1.86531 1.40485 1.34376 1.64894 1.22225 0.85043 0.91659 0.92971 1.22490 1.01153 1.01778 0.98480 1.21849 1.02127 0.94874 1.00890 1.22496 0.98942 1.03924 0.98843 1.22132 0.96643 0.99405 0.82061 0.88996 0.97116 0.94522 0.92916 0.90475 0.88900 0.91673 0.87648 0.91722 0.87324 0.92058 0.90987 0.89857 0.91211 0.90339 0.91502 0.89786 0.91049 0.91567 0.89440 0.89697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 8.87 37.16 0.33 -2.76 16 2 C 0.04 0.97 2.09 -92.92 -0.19 0.77 16 3 H 0.05 1.15 7.01 -51.93 -0.36 0.78 16 4 C -0.50 -14.29 8.32 -34.44 -0.29 -14.57 16 5 H 0.07 2.01 7.25 -52.49 -0.38 1.63 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -24.99 11.38 55.43 0.63 -24.36 16 8 Si 0.90 21.76 29.54 -169.99 -5.02 16.73 16 9 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 C 0.55 13.00 6.90 -10.98 -0.08 12.93 16 13 O -0.54 -14.65 16.36 5.55 0.09 -14.56 16 14 N -0.63 -11.88 3.31 -169.54 -0.56 -12.44 16 15 C 0.11 1.67 6.04 -2.50 -0.02 1.66 16 16 C -0.12 -1.51 3.73 -87.90 -0.33 -1.84 16 17 H 0.12 1.56 7.01 -51.93 -0.36 1.19 16 18 C 0.05 0.51 6.86 37.89 0.26 0.77 16 19 O -0.36 -4.10 11.65 -35.23 -0.41 -4.51 16 20 C 0.07 0.71 6.44 37.89 0.24 0.96 16 21 C -0.11 -1.37 1.03 -152.94 -0.16 -1.52 16 22 C 0.49 6.87 6.04 36.01 0.22 7.09 16 23 O -0.49 -7.59 11.15 -18.76 -0.21 -7.80 16 24 O -0.35 -4.45 9.82 -39.23 -0.39 -4.84 16 25 C 0.12 1.29 1.13 -90.62 -0.10 1.18 16 26 C -0.18 -1.76 8.37 37.16 0.31 -1.45 16 27 C -0.14 -1.18 8.85 37.16 0.33 -0.85 16 28 C -0.18 -2.27 8.37 37.16 0.31 -1.96 16 29 C 0.12 1.87 6.16 -2.50 -0.02 1.86 16 30 H 0.09 2.38 6.23 -51.93 -0.32 2.06 16 31 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 34 H 0.08 1.05 7.57 -51.93 -0.39 0.66 16 35 H 0.09 1.44 7.13 -51.93 -0.37 1.07 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.11 0.90 7.75 -51.93 -0.40 0.50 16 38 H 0.06 0.59 7.98 -51.93 -0.41 0.17 16 39 H 0.11 0.96 7.75 -51.93 -0.40 0.56 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.08 0.97 5.89 -51.93 -0.31 0.66 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 46 H 0.08 1.23 5.89 -51.93 -0.31 0.93 16 47 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 49 H 0.09 1.48 7.57 -51.93 -0.39 1.08 16 50 H 0.09 1.17 7.57 -51.93 -0.39 0.78 16 LS Contribution 391.38 15.07 5.90 5.90 Total: -1.00 -33.04 391.38 -7.41 -40.45 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -8.18 Total: 1.56 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: 0.73 Total: 3.86 kcal Atomic # 7 Polarization: -36.87 SS G_CDS: 0.07 Total: -36.80 kcal Atomic # 8 Polarization: -30.79 SS G_CDS: -0.91 Total: -31.71 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.04 -7.41 -40.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434157310.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.307 kcal (2) G-P(sol) polarization free energy of solvation -33.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds