Wall clock time and date at job start Tue Mar 31 2020 22:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47269 * 2 1 4 4 C 1.50694 * 109.46887 * 120.00636 * 2 1 3 5 5 H 1.08000 * 120.00325 * 119.99709 * 4 2 1 6 6 C 1.37885 * 119.99814 * 299.99307 * 4 2 1 7 7 N 1.31515 * 119.99642 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 119.99987 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47399 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46740 * 120.00551 * 8 6 4 11 11 H 1.48500 * 109.47221 * 240.00190 * 8 6 4 12 12 C 1.50704 * 109.46734 * 239.99972 * 2 1 3 13 13 O 1.21284 * 120.00124 * 274.93989 * 12 2 1 14 14 N 1.34780 * 119.99765 * 94.93960 * 12 2 1 15 15 C 1.48088 * 127.85030 * 354.87853 * 14 12 2 16 16 C 1.54272 * 104.76216 * 219.85321 * 15 14 12 17 17 H 1.09005 * 112.68430 * 99.71585 * 16 15 14 18 18 C 1.54389 * 108.77656 * 225.44495 * 16 15 14 19 19 O 1.44374 * 104.92031 * 87.01751 * 18 16 15 20 20 C 1.44384 * 105.25658 * 40.76647 * 19 18 16 21 21 C 1.54389 * 104.92179 * 319.23891 * 20 19 18 22 22 C 1.50701 * 112.70833 * 146.57502 * 21 20 19 23 23 O 1.20833 * 119.99483 * 242.72068 * 22 21 20 24 24 O 1.34220 * 120.00217 * 62.71936 * 22 21 20 25 25 C 1.45208 * 117.00135 * 179.97438 * 24 22 21 26 26 C 1.52999 * 109.46585 * 59.99915 * 25 24 22 27 27 C 1.53002 * 109.47165 * 179.97438 * 25 24 22 28 28 C 1.52997 * 109.46888 * 299.99898 * 25 24 22 29 29 C 1.48095 * 127.84816 * 174.83094 * 14 12 2 30 30 H 1.09002 * 109.47033 * 305.26394 * 1 2 3 31 31 H 1.09003 * 109.47040 * 65.25690 * 1 2 3 32 32 H 1.08997 * 109.47562 * 185.26186 * 1 2 3 33 33 H 0.97003 * 119.99433 * 180.02562 * 7 6 4 34 34 H 1.08995 * 110.37932 * 101.03387 * 15 14 12 35 35 H 1.09003 * 110.38127 * 338.67539 * 15 14 12 36 36 H 1.09001 * 110.35153 * 205.88489 * 18 16 15 37 37 H 1.08999 * 110.34762 * 328.04912 * 18 16 15 38 38 H 1.08999 * 110.35158 * 78.10027 * 20 19 18 39 39 H 1.09002 * 110.34836 * 200.26495 * 20 19 18 40 40 H 1.08997 * 109.47355 * 60.00805 * 26 25 24 41 41 H 1.09006 * 109.46588 * 180.02562 * 26 25 24 42 42 H 1.09000 * 109.47511 * 299.99707 * 26 25 24 43 43 H 1.08998 * 109.47058 * 59.99866 * 27 25 24 44 44 H 1.09001 * 109.46629 * 180.02562 * 27 25 24 45 45 H 1.08994 * 109.47096 * 300.00218 * 27 25 24 46 46 H 1.09000 * 109.47270 * 60.00255 * 28 25 24 47 47 H 1.09001 * 109.47034 * 179.97438 * 28 25 24 48 48 H 1.08998 * 109.47160 * 300.00027 * 28 25 24 49 49 H 1.09007 * 110.37713 * 21.32480 * 29 14 12 50 50 H 1.08992 * 110.47538 * 259.02326 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5887 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9429 0.8296 2.6033 8 14 2.3224 -1.1197 4.0078 9 1 3.1482 -2.2859 3.6037 10 1 3.1472 -0.1859 4.8160 11 1 1.1677 -1.5868 4.8164 12 6 2.0323 -0.7104 -1.2305 13 8 2.1491 -1.9176 -1.2286 14 7 2.3516 -0.0042 -2.3332 15 6 2.1800 1.4486 -2.5631 16 6 1.7080 1.5617 -4.0275 17 1 0.6297 1.6974 -4.1123 18 6 2.5065 2.6862 -4.7215 19 8 3.7037 2.0444 -5.2107 20 6 3.2669 0.7695 -5.7287 21 6 2.2231 0.2630 -4.7101 22 6 1.1205 -0.5362 -5.3555 23 8 -0.0206 -0.1421 -5.3047 24 8 1.4060 -1.6858 -5.9867 25 6 0.2942 -2.4032 -6.5848 26 6 -0.3810 -1.5157 -7.6323 27 6 0.8110 -3.6784 -7.2541 28 6 -0.7186 -2.7712 -5.4987 29 6 2.9548 -0.5048 -3.5897 30 1 -0.3633 0.5933 0.8391 31 1 -0.3633 0.4301 -0.9333 32 1 -0.3634 -1.0233 0.0942 33 1 0.7089 1.1612 3.4844 34 1 3.1283 1.9688 -2.4287 35 1 1.4252 1.8531 -1.8887 36 1 1.9335 3.1020 -5.5503 37 1 2.7592 3.4687 -4.0061 38 1 2.8089 0.8958 -6.7097 39 1 4.1066 0.0772 -5.7896 40 1 0.3406 -1.2536 -8.4061 41 1 -1.2159 -2.0541 -8.0810 42 1 -0.7491 -0.6070 -7.1559 43 1 1.2923 -4.3108 -6.5081 44 1 -0.0236 -4.2166 -7.7034 45 1 1.5323 -3.4159 -8.0278 46 1 -1.0867 -1.8626 -5.0223 47 1 -1.5534 -3.3094 -5.9477 48 1 -0.2375 -3.4034 -4.7525 49 1 2.7856 -1.5768 -3.6912 50 1 4.0222 -0.2858 -3.6140 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434157310.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:37 Heat of formation + Delta-G solvation = -180.408475 kcal Electronic energy + Delta-G solvation = -32151.032201 eV Core-core repulsion = 27949.839660 eV Total energy + Delta-G solvation = -4201.192541 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.67922 -41.23448 -40.04468 -38.08377 -37.06471 -35.84577 -35.22180 -33.17627 -32.15499 -31.99764 -28.46604 -28.34530 -27.40251 -27.33508 -26.84126 -25.22466 -23.87580 -23.15350 -21.39414 -20.38508 -20.27705 -18.76540 -18.43650 -17.85510 -17.69433 -17.28607 -16.94240 -16.76471 -16.62326 -16.17454 -15.89387 -15.76508 -15.36256 -15.08640 -14.73514 -14.68735 -14.48169 -14.29762 -13.70324 -13.49987 -13.43900 -13.25640 -13.23104 -13.05041 -13.00849 -12.96897 -12.92234 -12.70697 -12.67486 -12.56070 -12.44747 -12.33001 -12.15548 -12.12955 -12.08876 -12.04039 -11.47980 -11.14878 -11.09939 -10.92291 -10.63810 -10.36653 -9.78670 -8.20154 -6.31392 0.96470 1.38015 1.39833 1.44756 1.52651 1.78057 1.97720 2.42603 2.81014 2.90199 3.09695 3.23842 3.54198 3.63043 3.68007 3.72753 3.87736 3.88850 3.93028 4.06618 4.22032 4.42036 4.43249 4.49228 4.53473 4.55480 4.56725 4.64252 4.68353 4.69776 4.71413 4.77155 4.80907 4.83040 4.84656 4.90001 4.91990 4.96957 5.06737 5.18838 5.20327 5.23335 5.40948 5.42613 5.63677 5.65247 5.83251 6.10738 6.54203 6.63725 6.73181 7.28526 7.38670 8.86522 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.013579 B = 0.003584 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.568436 B = 7810.428439 C = 8901.776880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.036 3.964 3 H 0.044 0.956 4 C -0.530 4.530 5 H 0.041 0.959 6 C 0.024 3.976 7 N -0.907 5.907 8 Si 0.958 3.042 9 H -0.279 1.279 10 H -0.269 1.269 11 H -0.275 1.275 12 C 0.543 3.457 13 O -0.589 6.589 14 N -0.635 5.635 15 C 0.106 3.894 16 C -0.116 4.116 17 H 0.113 0.887 18 C 0.057 3.943 19 O -0.370 6.370 20 C 0.076 3.924 21 C -0.104 4.104 22 C 0.490 3.510 23 O -0.512 6.512 24 O -0.350 6.350 25 C 0.106 3.894 26 C -0.175 4.175 27 C -0.136 4.136 28 C -0.184 4.184 29 C 0.120 3.880 30 H 0.077 0.923 31 H 0.033 0.967 32 H 0.016 0.984 33 H 0.267 0.733 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.122 0.878 38 H 0.083 0.917 39 H 0.125 0.875 40 H 0.075 0.925 41 H 0.091 0.909 42 H 0.061 0.939 43 H 0.059 0.941 44 H 0.101 0.899 45 H 0.080 0.920 46 H 0.055 0.945 47 H 0.096 0.904 48 H 0.046 0.954 49 H 0.067 0.933 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.883 2.059 -23.938 24.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.015 3.985 3 H 0.062 0.938 4 C -0.569 4.569 5 H 0.060 0.940 6 C -0.176 4.176 7 N -0.546 5.546 8 Si 0.783 3.217 9 H -0.204 1.204 10 H -0.194 1.194 11 H -0.200 1.200 12 C 0.336 3.664 13 O -0.468 6.468 14 N -0.369 5.369 15 C -0.016 4.016 16 C -0.136 4.136 17 H 0.131 0.869 18 C -0.019 4.019 19 O -0.289 6.289 20 C -0.001 4.001 21 C -0.107 4.107 22 C 0.333 3.667 23 O -0.400 6.400 24 O -0.267 6.267 25 C 0.071 3.929 26 C -0.232 4.232 27 C -0.193 4.193 28 C -0.241 4.241 29 C -0.003 4.003 30 H 0.096 0.904 31 H 0.052 0.948 32 H 0.036 0.964 33 H 0.077 0.923 34 H 0.114 0.886 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.140 0.860 38 H 0.101 0.899 39 H 0.142 0.858 40 H 0.094 0.906 41 H 0.110 0.890 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.119 0.881 45 H 0.099 0.901 46 H 0.074 0.926 47 H 0.114 0.886 48 H 0.065 0.935 49 H 0.085 0.915 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 0.703 1.642 -23.693 23.760 hybrid contribution -0.379 -0.796 1.286 1.559 sum 0.324 0.846 -22.407 22.425 Atomic orbital electron populations 1.21478 0.95657 0.99532 1.00336 1.18766 0.94620 0.96186 0.88909 0.93764 1.21144 1.32300 1.12382 0.91035 0.94030 1.25587 0.94964 0.95657 1.01363 1.69952 1.36754 1.23384 1.24508 0.85503 0.78384 0.78610 0.79167 1.20444 1.19381 1.20033 1.21464 0.74504 0.86836 0.83608 1.90512 1.55940 1.16562 1.83829 1.49211 1.62956 1.10387 1.14328 1.22683 1.02743 0.80606 0.95599 1.23587 1.02867 0.92842 0.94273 0.86879 1.23607 0.85199 0.94169 0.98938 1.89171 1.29868 1.29983 1.79854 1.23383 0.96370 0.86155 0.94228 1.22727 0.94694 0.95803 0.97428 1.22804 0.89142 0.79661 0.75044 1.90570 1.22836 1.69825 1.56783 1.86531 1.41434 1.33981 1.64754 1.22560 0.84574 0.92974 0.92821 1.22434 1.02021 1.00697 0.98087 1.21879 1.03265 0.93370 1.00762 1.22482 1.00147 1.02402 0.99050 1.22332 0.97949 0.98697 0.81306 0.90395 0.94778 0.96449 0.92348 0.88553 0.89821 0.89531 0.85997 0.89853 0.85754 0.90609 0.88991 0.92040 0.92196 0.88063 0.90108 0.92605 0.88569 0.93532 0.91458 0.87553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.64 8.87 71.98 0.64 -5.00 16 2 C 0.04 1.91 2.09 -12.29 -0.03 1.88 16 3 H 0.04 2.30 7.01 -2.39 -0.02 2.28 16 4 C -0.53 -31.28 8.32 25.60 0.21 -31.06 16 5 H 0.04 2.61 7.25 -2.91 -0.02 2.59 16 6 C 0.02 1.36 5.30 84.66 0.45 1.81 16 7 N -0.91 -51.00 11.38 21.45 0.24 -50.76 16 8 Si 0.96 44.98 29.54 68.60 2.03 47.01 16 9 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 10 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 11 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 12 C 0.54 26.85 6.90 87.66 0.60 27.46 16 13 O -0.59 -33.31 16.36 -3.04 -0.05 -33.36 16 14 N -0.63 -24.08 3.31 -808.68 -2.68 -26.76 16 15 C 0.11 3.08 6.04 86.51 0.52 3.60 16 16 C -0.12 -2.71 3.73 -9.03 -0.03 -2.75 16 17 H 0.11 2.84 7.01 -2.38 -0.02 2.83 16 18 C 0.06 0.96 6.86 72.45 0.50 1.45 16 19 O -0.37 -7.15 11.65 -148.98 -1.74 -8.89 16 20 C 0.08 1.34 6.44 72.45 0.47 1.80 16 21 C -0.10 -2.54 1.03 -51.16 -0.05 -2.59 16 22 C 0.49 13.41 6.04 71.24 0.43 13.84 16 23 O -0.51 -15.83 11.15 21.94 0.24 -15.59 16 24 O -0.35 -8.79 9.82 -51.32 -0.50 -9.30 16 25 C 0.11 2.22 1.13 -10.79 -0.01 2.21 16 26 C -0.18 -3.06 8.37 71.98 0.60 -2.46 16 27 C -0.14 -2.01 8.85 71.98 0.64 -1.37 16 28 C -0.18 -4.55 8.37 71.98 0.60 -3.95 16 29 C 0.12 3.66 6.16 86.50 0.53 4.20 16 30 H 0.08 4.13 6.23 -2.39 -0.01 4.11 16 31 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.27 14.10 8.31 -92.71 -0.77 13.33 16 34 H 0.10 2.46 7.57 -2.39 -0.02 2.44 16 35 H 0.08 2.58 7.13 -2.39 -0.02 2.56 16 36 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.12 1.66 7.75 -2.39 -0.02 1.64 16 38 H 0.08 1.21 7.98 -2.39 -0.02 1.20 16 39 H 0.12 1.81 7.75 -2.39 -0.02 1.79 16 40 H 0.07 1.09 8.14 -2.39 -0.02 1.08 16 41 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 42 H 0.06 1.37 5.89 -2.39 -0.01 1.36 16 43 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.05 1.70 5.89 -2.39 -0.01 1.69 16 47 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 48 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 49 H 0.07 2.34 7.57 -2.38 -0.02 2.32 16 50 H 0.11 2.80 7.57 -2.39 -0.02 2.78 16 Total: -1.00 -74.11 391.38 4.55 -69.56 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: 0.93 Total: 19.00 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: 6.07 Total: 9.08 kcal Atomic # 7 Polarization: -75.08 SS G_CDS: -2.43 Total: -77.51 kcal Atomic # 8 Polarization: -65.09 SS G_CDS: -2.04 Total: -67.14 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -74.11 4.55 -69.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434157310.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.850 kcal (2) G-P(sol) polarization free energy of solvation -74.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds