Wall clock time and date at job start Tue Mar 31 2020 22:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47227 * 2 1 4 4 C 1.53004 * 109.47210 * 240.00162 * 2 1 3 5 5 C 1.52996 * 109.47522 * 174.99891 * 4 2 1 6 6 N 1.46493 * 109.47413 * 179.97438 * 5 4 2 7 7 C 1.34777 * 120.00309 * 179.97438 * 6 5 4 8 8 O 1.21280 * 119.99786 * 0.02562 * 7 6 5 9 9 C 1.50699 * 120.00118 * 180.02562 * 7 6 5 10 10 C 1.50702 * 109.46945 * 180.02562 * 9 7 6 11 11 C 1.33636 * 122.75111 * 85.02567 * 10 9 7 12 12 S 1.76195 * 107.92420 * 179.75695 * 11 10 9 13 13 C 1.70982 * 90.28425 * 0.28306 * 12 11 10 14 14 C 1.50699 * 124.91863 * 179.97438 * 13 12 11 15 15 C 1.52997 * 109.47078 * 239.69654 * 14 13 12 16 16 C 1.52992 * 109.46956 * 119.69342 * 14 13 12 17 17 C 1.53006 * 109.46866 * 359.69477 * 14 13 12 18 18 N 1.29028 * 110.16088 * 359.71148 * 13 12 11 19 19 N 1.46501 * 109.47460 * 120.00403 * 2 1 3 20 20 C 1.36940 * 119.99842 * 274.99955 * 19 2 1 21 21 H 1.08008 * 119.99902 * 359.97438 * 20 19 2 22 22 C 1.38806 * 120.00029 * 180.02562 * 20 19 2 23 23 N 1.31627 * 119.99714 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 120.00103 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.46980 * 90.00418 * 24 22 20 26 26 H 1.48504 * 109.47204 * 210.00258 * 24 22 20 27 27 H 1.48494 * 109.47257 * 330.00441 * 24 22 20 28 28 H 1.08996 * 109.47227 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46798 * 299.99465 * 1 2 3 30 30 H 1.08996 * 109.47255 * 59.99552 * 1 2 3 31 31 H 1.09000 * 109.46928 * 54.99851 * 4 2 1 32 32 H 1.09003 * 109.46872 * 295.00426 * 4 2 1 33 33 H 1.09000 * 109.47051 * 60.00036 * 5 4 2 34 34 H 1.09002 * 109.46970 * 300.00047 * 5 4 2 35 35 H 0.97004 * 120.00055 * 0.02562 * 6 5 4 36 36 H 1.09000 * 109.47011 * 60.00378 * 9 7 6 37 37 H 1.09002 * 109.47253 * 300.00240 * 9 7 6 38 38 H 1.08000 * 126.03728 * 359.97438 * 11 10 9 39 39 H 1.09002 * 109.47153 * 299.99793 * 15 14 13 40 40 H 1.09001 * 109.46832 * 179.97438 * 15 14 13 41 41 H 1.09004 * 109.47261 * 59.99965 * 15 14 13 42 42 H 1.09001 * 109.47066 * 180.02562 * 16 14 13 43 43 H 1.08996 * 109.47747 * 299.99900 * 16 14 13 44 44 H 1.09002 * 109.47103 * 60.00312 * 16 14 13 45 45 H 1.08993 * 109.46955 * 300.00219 * 17 14 13 46 46 H 1.09000 * 109.47050 * 60.00048 * 17 14 13 47 47 H 1.09001 * 109.47002 * 179.97438 * 17 14 13 48 48 H 0.97000 * 120.00194 * 94.99194 * 19 2 1 49 49 H 0.97003 * 119.99712 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 7 4.0532 -1.3044 -2.5096 7 6 5.3740 -1.3398 -2.7753 8 8 6.1583 -0.7999 -2.0242 9 6 5.8763 -2.0502 -4.0058 10 6 7.3782 -1.9440 -4.0692 11 6 8.1905 -2.7916 -3.4308 12 16 9.8513 -2.3152 -3.7765 13 6 9.2882 -1.0186 -4.7384 14 6 10.1708 -0.0347 -5.4622 15 6 9.8749 1.3803 -4.9613 16 6 9.8950 -0.1119 -6.9651 17 6 11.6387 -0.3739 -5.1950 18 7 7.9981 -1.0079 -4.7592 19 7 2.0184 -0.6907 1.1961 20 6 2.1492 -0.0076 2.3757 21 1 1.8927 1.0405 2.4242 22 6 2.6125 -0.6618 3.5089 23 7 2.7377 -0.0053 4.6428 24 14 3.0568 -2.4742 3.4250 25 1 4.4894 -2.6163 3.0605 26 1 2.8179 -3.1043 4.7483 27 1 2.2165 -3.1429 2.3994 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.6054 -0.2617 -2.1370 32 1 1.7516 -1.7715 -1.2057 33 1 3.9995 -1.0728 -0.4261 34 1 3.8532 0.4370 -1.3575 35 1 3.4258 -1.7358 -3.1106 36 1 5.4414 -1.5909 -4.8935 37 1 5.5882 -3.1006 -3.9620 38 1 7.8834 -3.6238 -2.8149 39 1 8.8292 1.6219 -5.1516 40 1 10.5137 2.0919 -5.4845 41 1 10.0715 1.4352 -3.8905 42 1 10.5337 0.5995 -7.4887 43 1 10.1058 -1.1199 -7.3220 44 1 8.8493 0.1297 -7.1554 45 1 11.8351 -0.3190 -4.1243 46 1 11.8494 -1.3820 -5.5518 47 1 12.2771 0.3375 -5.7189 48 1 2.2490 -1.6319 1.1525 49 1 3.0611 -0.4626 5.4348 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480797822.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:03 Heat of formation + Delta-G solvation = -2.499146 kcal Electronic energy + Delta-G solvation = -26706.711477 eV Core-core repulsion = 22988.279286 eV Total energy + Delta-G solvation = -3718.432191 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.50532 -39.25663 -37.13207 -36.67019 -34.43432 -32.35656 -31.85235 -29.86580 -28.79508 -27.79974 -27.66576 -27.57068 -25.20714 -23.68844 -22.56226 -21.03435 -20.24723 -19.70692 -19.48631 -17.75395 -17.62706 -16.98488 -16.10348 -15.72498 -15.50075 -15.06946 -14.88360 -14.44835 -14.19066 -14.05756 -13.98421 -13.69299 -13.39162 -13.31642 -13.06188 -12.66281 -12.53139 -12.48828 -12.27701 -12.19864 -12.02318 -11.92606 -11.77495 -11.48885 -11.36637 -11.27441 -11.18953 -11.02717 -10.78464 -10.64369 -10.40084 -10.06032 -9.77700 -9.73972 -9.55788 -9.48125 -8.95420 -8.88175 -8.85644 -7.25070 -5.73984 -3.09440 0.58520 1.21970 1.59817 2.54335 2.71966 3.35944 3.38767 3.42318 3.47373 3.71600 4.35037 4.53530 4.54753 4.61742 4.73789 4.92268 4.94581 5.10416 5.16337 5.17518 5.18413 5.21514 5.27578 5.39716 5.48055 5.49670 5.54417 5.56441 5.59406 5.60991 5.64335 5.71313 5.88445 5.96846 5.98355 6.06671 6.08347 6.24799 6.27560 6.37704 6.49370 6.60170 6.78907 6.98270 7.56434 7.61524 8.02045 8.31517 8.45021 9.23235 9.95790 10.14946 11.44545 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014929 B = 0.002276 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.065644 B =12300.486068 C =12972.602161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.179 3.821 3 H 0.058 0.942 4 C -0.135 4.135 5 C 0.121 3.879 6 N -0.731 5.731 7 C 0.511 3.489 8 O -0.527 6.527 9 C -0.067 4.067 10 C 0.090 3.910 11 C -0.248 4.248 12 S 0.121 5.879 13 C 0.061 3.939 14 C 0.011 3.989 15 C -0.135 4.135 16 C -0.133 4.133 17 C -0.154 4.154 18 N -0.460 5.460 19 N -0.748 5.748 20 C -0.241 4.241 21 H 0.090 0.910 22 C 0.004 3.996 23 N -0.934 5.934 24 Si 0.882 3.118 25 H -0.284 1.284 26 H -0.292 1.292 27 H -0.278 1.278 28 H 0.044 0.956 29 H 0.058 0.942 30 H 0.039 0.961 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.397 0.603 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.174 0.826 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.058 0.942 42 H 0.064 0.936 43 H 0.055 0.945 44 H 0.067 0.933 45 H 0.064 0.936 46 H 0.062 0.938 47 H 0.074 0.926 48 H 0.360 0.640 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.301 -5.279 -27.374 30.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.069 3.931 3 H 0.076 0.924 4 C -0.174 4.174 5 C -0.001 4.001 6 N -0.383 5.383 7 C 0.296 3.704 8 O -0.402 6.402 9 C -0.110 4.110 10 C -0.042 4.042 11 C -0.387 4.387 12 S 0.378 5.622 13 C -0.218 4.218 14 C 0.007 3.993 15 C -0.194 4.194 16 C -0.191 4.191 17 C -0.212 4.212 18 N -0.174 5.174 19 N -0.391 5.391 20 C -0.371 4.371 21 H 0.108 0.892 22 C -0.191 4.191 23 N -0.582 5.582 24 Si 0.712 3.288 25 H -0.211 1.211 26 H -0.218 1.218 27 H -0.204 1.204 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.058 0.942 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.230 0.770 36 H 0.128 0.872 37 H 0.127 0.873 38 H 0.192 0.808 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.074 0.926 44 H 0.086 0.914 45 H 0.083 0.917 46 H 0.081 0.919 47 H 0.093 0.907 48 H 0.193 0.807 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 14.610 -4.694 -26.618 30.724 hybrid contribution -1.088 -1.714 0.100 2.032 sum 13.522 -6.408 -26.518 30.448 Atomic orbital electron populations 1.22391 0.98617 1.00827 1.00521 1.20131 0.92053 0.95904 0.84996 0.92379 1.22104 0.93965 1.01667 0.99660 1.21437 0.94269 0.97525 0.86902 1.46079 1.07071 1.57437 1.27681 1.20339 0.82515 0.80826 0.86755 1.90765 1.55225 1.44937 1.49317 1.20187 0.89705 1.02671 0.98464 1.19388 0.96177 0.91851 0.96828 1.26778 0.95168 1.07891 1.08902 1.83845 1.08277 1.25198 1.44889 1.26982 0.93191 1.00199 1.01387 1.19225 0.92203 0.92805 0.95034 1.21845 1.02874 0.93264 1.01387 1.21828 1.02868 1.01981 0.92463 1.22029 0.94079 1.02378 1.02719 1.65867 1.07325 1.23049 1.21130 1.42823 1.79779 1.09283 1.07241 1.19063 1.36783 0.95510 0.85708 0.89176 1.24658 1.01467 0.97379 0.95612 1.69702 1.52724 1.35528 1.00259 0.86586 0.78527 0.86937 0.76701 1.21067 1.21814 1.20424 0.93659 0.92244 0.94220 0.91393 0.91749 0.90410 0.91454 0.76970 0.87165 0.87341 0.80821 0.91384 0.91667 0.92316 0.91654 0.92599 0.91442 0.91726 0.91887 0.90674 0.80741 0.93113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.74 9.49 37.16 0.35 -2.39 16 2 C 0.18 3.29 2.89 -67.93 -0.20 3.09 16 3 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 4 C -0.14 -1.91 4.87 -26.73 -0.13 -2.04 16 5 C 0.12 1.92 5.56 -4.05 -0.02 1.90 16 6 N -0.73 -9.10 5.56 -60.30 -0.33 -9.43 16 7 C 0.51 7.31 7.82 -10.99 -0.09 7.22 16 8 O -0.53 -10.32 16.03 5.56 0.09 -10.23 16 9 C -0.07 -0.69 6.11 -29.03 -0.18 -0.87 16 10 C 0.09 1.12 5.23 -84.23 -0.44 0.68 16 11 C -0.25 -2.89 11.14 29.12 0.32 -2.56 16 12 S 0.12 1.24 21.57 -107.50 -2.32 -1.08 16 13 C 0.06 0.68 5.78 -13.46 -0.08 0.60 16 14 C 0.01 0.09 0.99 -155.66 -0.15 -0.06 16 15 C -0.13 -1.20 8.45 37.16 0.31 -0.88 16 16 C -0.13 -0.95 8.45 37.15 0.31 -0.64 16 17 C -0.15 -0.99 7.54 37.16 0.28 -0.71 16 18 N -0.46 -5.98 10.51 -8.06 -0.08 -6.07 16 19 N -0.75 -17.36 4.38 -53.42 -0.23 -17.59 16 20 C -0.24 -6.79 10.41 -15.06 -0.16 -6.95 16 21 H 0.09 2.72 8.06 -52.48 -0.42 2.30 16 22 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 23 N -0.93 -29.79 13.97 55.49 0.78 -29.01 16 24 Si 0.88 22.55 27.74 -169.99 -4.71 17.83 16 25 H -0.28 -7.34 7.11 56.52 0.40 -6.94 16 26 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 27 H -0.28 -6.62 6.52 56.52 0.37 -6.26 16 28 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.08 1.50 7.75 -51.93 -0.40 1.10 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.40 3.41 8.47 -40.82 -0.35 3.06 16 36 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.17 1.72 8.06 -52.49 -0.42 1.29 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.44 7.93 -51.93 -0.41 0.03 16 46 H 0.06 0.37 7.92 -51.93 -0.41 -0.04 16 47 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 48 H 0.36 8.28 5.66 -40.82 -0.23 8.05 16 49 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 LS Contribution 413.09 15.07 6.23 6.23 Total: -1.00 -36.14 413.09 -9.13 -45.27 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -8.58 Total: 7.66 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: 0.05 Total: -3.57 kcal Atomic # 7 Polarization: -62.23 SS G_CDS: 0.12 Total: -62.10 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.09 Total: -10.23 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -4.71 Total: 17.83 kcal Atomic # 16 Polarization: 1.24 SS G_CDS: -2.32 Total: -1.08 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -36.14 -9.13 -45.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480797822.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.770 kcal (2) G-P(sol) polarization free energy of solvation -36.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds