Wall clock time and date at job start Tue Mar 31 2020 22:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47227 * 2 1 4 4 C 1.53004 * 109.47210 * 240.00162 * 2 1 3 5 5 C 1.52996 * 109.47522 * 174.99891 * 4 2 1 6 6 N 1.46493 * 109.47413 * 179.97438 * 5 4 2 7 7 C 1.34777 * 120.00309 * 179.97438 * 6 5 4 8 8 O 1.21280 * 119.99786 * 0.02562 * 7 6 5 9 9 C 1.50699 * 120.00118 * 180.02562 * 7 6 5 10 10 C 1.50702 * 109.46945 * 180.02562 * 9 7 6 11 11 C 1.33636 * 122.75111 * 85.02567 * 10 9 7 12 12 S 1.76195 * 107.92420 * 179.75695 * 11 10 9 13 13 C 1.70982 * 90.28425 * 0.28306 * 12 11 10 14 14 C 1.50699 * 124.91863 * 179.97438 * 13 12 11 15 15 C 1.52997 * 109.47078 * 239.69654 * 14 13 12 16 16 C 1.52992 * 109.46956 * 119.69342 * 14 13 12 17 17 C 1.53006 * 109.46866 * 359.69477 * 14 13 12 18 18 N 1.29028 * 110.16088 * 359.71148 * 13 12 11 19 19 N 1.46501 * 109.47460 * 120.00403 * 2 1 3 20 20 C 1.36940 * 119.99842 * 274.99955 * 19 2 1 21 21 H 1.08008 * 119.99902 * 359.97438 * 20 19 2 22 22 C 1.38806 * 120.00029 * 180.02562 * 20 19 2 23 23 N 1.31627 * 119.99714 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 120.00103 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.46980 * 90.00418 * 24 22 20 26 26 H 1.48504 * 109.47204 * 210.00258 * 24 22 20 27 27 H 1.48494 * 109.47257 * 330.00441 * 24 22 20 28 28 H 1.08996 * 109.47227 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46798 * 299.99465 * 1 2 3 30 30 H 1.08996 * 109.47255 * 59.99552 * 1 2 3 31 31 H 1.09000 * 109.46928 * 54.99851 * 4 2 1 32 32 H 1.09003 * 109.46872 * 295.00426 * 4 2 1 33 33 H 1.09000 * 109.47051 * 60.00036 * 5 4 2 34 34 H 1.09002 * 109.46970 * 300.00047 * 5 4 2 35 35 H 0.97004 * 120.00055 * 0.02562 * 6 5 4 36 36 H 1.09000 * 109.47011 * 60.00378 * 9 7 6 37 37 H 1.09002 * 109.47253 * 300.00240 * 9 7 6 38 38 H 1.08000 * 126.03728 * 359.97438 * 11 10 9 39 39 H 1.09002 * 109.47153 * 299.99793 * 15 14 13 40 40 H 1.09001 * 109.46832 * 179.97438 * 15 14 13 41 41 H 1.09004 * 109.47261 * 59.99965 * 15 14 13 42 42 H 1.09001 * 109.47066 * 180.02562 * 16 14 13 43 43 H 1.08996 * 109.47747 * 299.99900 * 16 14 13 44 44 H 1.09002 * 109.47103 * 60.00312 * 16 14 13 45 45 H 1.08993 * 109.46955 * 300.00219 * 17 14 13 46 46 H 1.09000 * 109.47050 * 60.00048 * 17 14 13 47 47 H 1.09001 * 109.47002 * 179.97438 * 17 14 13 48 48 H 0.97000 * 120.00194 * 94.99194 * 19 2 1 49 49 H 0.97003 * 119.99712 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 7 4.0532 -1.3044 -2.5096 7 6 5.3740 -1.3398 -2.7753 8 8 6.1583 -0.7999 -2.0242 9 6 5.8763 -2.0502 -4.0058 10 6 7.3782 -1.9440 -4.0692 11 6 8.1905 -2.7916 -3.4308 12 16 9.8513 -2.3152 -3.7765 13 6 9.2882 -1.0186 -4.7384 14 6 10.1708 -0.0347 -5.4622 15 6 9.8749 1.3803 -4.9613 16 6 9.8950 -0.1119 -6.9651 17 6 11.6387 -0.3739 -5.1950 18 7 7.9981 -1.0079 -4.7592 19 7 2.0184 -0.6907 1.1961 20 6 2.1492 -0.0076 2.3757 21 1 1.8927 1.0405 2.4242 22 6 2.6125 -0.6618 3.5089 23 7 2.7377 -0.0053 4.6428 24 14 3.0568 -2.4742 3.4250 25 1 4.4894 -2.6163 3.0605 26 1 2.8179 -3.1043 4.7483 27 1 2.2165 -3.1429 2.3994 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.6054 -0.2617 -2.1370 32 1 1.7516 -1.7715 -1.2057 33 1 3.9995 -1.0728 -0.4261 34 1 3.8532 0.4370 -1.3575 35 1 3.4258 -1.7358 -3.1106 36 1 5.4414 -1.5909 -4.8935 37 1 5.5882 -3.1006 -3.9620 38 1 7.8834 -3.6238 -2.8149 39 1 8.8292 1.6219 -5.1516 40 1 10.5137 2.0919 -5.4845 41 1 10.0715 1.4352 -3.8905 42 1 10.5337 0.5995 -7.4887 43 1 10.1058 -1.1199 -7.3220 44 1 8.8493 0.1297 -7.1554 45 1 11.8351 -0.3190 -4.1243 46 1 11.8494 -1.3820 -5.5518 47 1 12.2771 0.3375 -5.7189 48 1 2.2490 -1.6319 1.1525 49 1 3.0611 -0.4626 5.4348 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480797822.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:02 Heat of formation + Delta-G solvation = -28.238327 kcal Electronic energy + Delta-G solvation = -26707.827612 eV Core-core repulsion = 22988.279286 eV Total energy + Delta-G solvation = -3719.548326 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.41797 -40.31693 -38.31891 -37.69895 -35.86625 -34.22418 -32.87680 -31.59059 -30.04266 -28.68411 -28.34857 -28.19889 -26.06666 -25.53956 -23.96955 -22.12899 -21.56750 -20.80369 -20.28756 -19.67273 -18.53167 -18.10119 -17.08585 -17.06807 -16.58928 -16.33114 -15.87944 -15.83874 -15.27594 -15.11281 -14.99865 -14.86557 -14.67468 -14.41188 -14.22955 -14.10116 -13.74387 -13.59643 -13.35090 -13.10257 -12.98401 -12.94087 -12.64181 -12.63113 -12.44548 -12.30019 -12.24712 -12.17782 -12.05901 -11.99723 -11.91019 -11.79433 -11.65054 -11.04389 -10.96640 -10.58027 -10.31714 -10.11570 -9.69843 -9.30624 -8.02743 -5.34431 -0.25001 0.42561 0.77225 1.32418 1.38226 1.43841 1.62639 1.63957 2.35428 2.46821 2.98319 3.29438 3.61880 3.62371 3.84042 3.93293 3.94744 3.97409 4.10688 4.18776 4.23663 4.29809 4.36075 4.47526 4.63564 4.64815 4.71705 4.75144 4.77400 4.81506 4.83205 4.93342 4.95057 4.97950 5.00466 5.07252 5.09538 5.17580 5.25032 5.32964 5.35732 5.39181 5.44620 5.58093 5.78978 6.22068 6.57917 6.78006 7.09076 7.28912 7.86222 8.03836 9.19391 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014929 B = 0.002276 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.065644 B =12300.486068 C =12972.602161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.166 3.834 3 H 0.039 0.961 4 C -0.117 4.117 5 C 0.128 3.872 6 N -0.711 5.711 7 C 0.508 3.492 8 O -0.589 6.589 9 C -0.057 4.057 10 C 0.068 3.932 11 C -0.267 4.267 12 S 0.144 5.856 13 C 0.050 3.950 14 C 0.007 3.993 15 C -0.132 4.132 16 C -0.127 4.127 17 C -0.152 4.152 18 N -0.487 5.487 19 N -0.750 5.750 20 C -0.221 4.221 21 H 0.055 0.945 22 C -0.069 4.069 23 N -0.987 5.987 24 Si 0.952 3.048 25 H -0.289 1.289 26 H -0.296 1.296 27 H -0.245 1.245 28 H 0.055 0.945 29 H 0.027 0.973 30 H 0.077 0.923 31 H 0.109 0.891 32 H 0.084 0.916 33 H 0.038 0.962 34 H 0.044 0.956 35 H 0.421 0.579 36 H 0.131 0.869 37 H 0.146 0.854 38 H 0.187 0.813 39 H 0.046 0.954 40 H 0.090 0.910 41 H 0.042 0.958 42 H 0.086 0.914 43 H 0.059 0.941 44 H 0.051 0.949 45 H 0.057 0.943 46 H 0.069 0.931 47 H 0.096 0.904 48 H 0.364 0.636 49 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.096 -7.414 -30.879 34.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.058 3.942 3 H 0.057 0.943 4 C -0.155 4.155 5 C 0.004 3.996 6 N -0.364 5.364 7 C 0.295 3.705 8 O -0.468 6.468 9 C -0.099 4.099 10 C -0.064 4.064 11 C -0.406 4.406 12 S 0.401 5.599 13 C -0.228 4.228 14 C 0.003 3.997 15 C -0.191 4.191 16 C -0.186 4.186 17 C -0.210 4.210 18 N -0.201 5.201 19 N -0.394 5.394 20 C -0.352 4.352 21 H 0.073 0.927 22 C -0.260 4.260 23 N -0.638 5.638 24 Si 0.779 3.221 25 H -0.216 1.216 26 H -0.223 1.223 27 H -0.169 1.169 28 H 0.074 0.926 29 H 0.047 0.953 30 H 0.096 0.904 31 H 0.127 0.873 32 H 0.103 0.897 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.259 0.741 36 H 0.149 0.851 37 H 0.164 0.836 38 H 0.204 0.796 39 H 0.066 0.934 40 H 0.108 0.892 41 H 0.061 0.939 42 H 0.105 0.895 43 H 0.078 0.922 44 H 0.070 0.930 45 H 0.076 0.924 46 H 0.088 0.912 47 H 0.114 0.886 48 H 0.197 0.803 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 14.342 -6.858 -30.226 34.152 hybrid contribution -1.015 -0.903 1.133 1.769 sum 13.327 -7.761 -29.093 32.928 Atomic orbital electron populations 1.22239 0.96593 1.01618 1.00913 1.20445 0.93404 0.95231 0.85083 0.94275 1.21951 0.92241 1.02639 0.98670 1.21124 0.95488 0.96122 0.86854 1.45828 1.07190 1.56620 1.26807 1.21099 0.82353 0.79892 0.87202 1.90743 1.56812 1.47638 1.51641 1.20259 0.88520 1.04430 0.96736 1.19788 0.97413 0.92018 0.97174 1.27096 0.95993 1.08446 1.09061 1.83671 1.07476 1.24517 1.44247 1.27561 0.93286 1.00746 1.01255 1.19414 0.92948 0.91702 0.95596 1.21825 1.02098 0.94469 1.00717 1.21789 1.02364 1.02857 0.91564 1.22036 0.92864 1.03444 1.02610 1.65918 1.08261 1.23712 1.22235 1.42840 1.80042 1.09428 1.07121 1.19030 1.34357 0.94298 0.87535 0.92685 1.25485 1.02747 1.02447 0.95341 1.69889 1.55119 1.37644 1.01189 0.85452 0.78148 0.81255 0.77196 1.21612 1.22290 1.16903 0.92596 0.95347 0.90390 0.87311 0.89721 0.94346 0.93756 0.74143 0.85056 0.83607 0.79608 0.93448 0.89166 0.93918 0.89516 0.92180 0.92981 0.92438 0.91171 0.88569 0.80284 0.93558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.78 9.49 71.98 0.68 -4.09 16 2 C 0.17 5.88 2.89 44.99 0.13 6.01 16 3 H 0.04 1.53 8.08 -2.39 -0.02 1.51 16 4 C -0.12 -2.91 4.87 30.59 0.15 -2.76 16 5 C 0.13 3.92 5.56 86.38 0.48 4.40 16 6 N -0.71 -16.04 5.56 -463.08 -2.57 -18.62 16 7 C 0.51 13.93 7.82 87.66 0.69 14.61 16 8 O -0.59 -23.52 16.03 -3.03 -0.05 -23.57 16 9 C -0.06 -1.05 6.11 29.10 0.18 -0.87 16 10 C 0.07 1.64 5.23 41.52 0.22 1.86 16 11 C -0.27 -6.00 11.14 66.78 0.74 -5.25 16 12 S 0.14 2.85 21.57 -56.49 -1.22 1.63 16 13 C 0.05 1.09 5.78 88.52 0.51 1.60 16 14 C 0.01 0.12 0.99 -52.93 -0.05 0.06 16 15 C -0.13 -2.31 8.45 71.98 0.61 -1.70 16 16 C -0.13 -1.63 8.45 71.98 0.61 -1.02 16 17 C -0.15 -1.70 7.54 71.98 0.54 -1.16 16 18 N -0.49 -12.53 10.51 -179.40 -1.89 -14.41 16 19 N -0.75 -34.46 4.38 -322.93 -1.41 -35.88 16 20 C -0.22 -12.79 10.41 84.03 0.87 -11.92 16 21 H 0.06 3.51 8.06 -2.91 -0.02 3.48 16 22 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 23 N -0.99 -65.38 13.97 21.65 0.30 -65.08 16 24 Si 0.95 47.13 27.74 68.60 1.90 49.03 16 25 H -0.29 -14.47 7.11 99.48 0.71 -13.77 16 26 H -0.30 -14.80 7.11 99.48 0.71 -14.09 16 27 H -0.24 -10.64 6.52 99.48 0.65 -9.99 16 28 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.04 1.49 7.75 -2.39 -0.02 1.47 16 34 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.42 5.46 8.47 -92.71 -0.79 4.67 16 36 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.15 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.19 3.48 8.06 -2.91 -0.02 3.45 16 39 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.04 0.86 8.14 -2.38 -0.02 0.84 16 42 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.06 0.73 7.93 -2.39 -0.02 0.71 16 46 H 0.07 0.69 7.92 -2.39 -0.02 0.67 16 47 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 48 H 0.36 16.09 5.66 -92.71 -0.52 15.56 16 49 H 0.26 16.18 8.31 -92.71 -0.77 15.41 16 Total: -1.00 -84.44 413.09 1.46 -82.99 By element: Atomic # 1 Polarization: 28.31 SS G_CDS: -0.43 Total: 27.88 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: 6.83 Total: -3.97 kcal Atomic # 7 Polarization: -128.41 SS G_CDS: -5.57 Total: -133.98 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.05 Total: -23.57 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 1.90 Total: 49.03 kcal Atomic # 16 Polarization: 2.85 SS G_CDS: -1.22 Total: 1.63 kcal Total: -84.44 1.46 -82.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480797822.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.747 kcal (2) G-P(sol) polarization free energy of solvation -84.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds