Wall clock time and date at job start Tue Mar 31 2020 22:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47166 * 2 1 4 4 C 1.52992 * 109.47448 * 120.00767 * 2 1 3 5 5 C 1.52997 * 109.47482 * 184.99813 * 4 2 1 6 6 N 1.46505 * 109.47212 * 179.97438 * 5 4 2 7 7 C 1.34771 * 119.99622 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00597 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99622 * 179.97438 * 7 6 5 10 10 C 1.50703 * 109.47064 * 180.02562 * 9 7 6 11 11 C 1.33634 * 122.74867 * 85.02900 * 10 9 7 12 12 S 1.76205 * 107.92629 * 180.02562 * 11 10 9 13 13 C 1.70982 * 90.27845 * 359.97438 * 12 11 10 14 14 C 1.50697 * 124.91585 * 180.02562 * 13 12 11 15 15 C 1.53002 * 109.46923 * 239.97369 * 14 13 12 16 16 C 1.53007 * 109.46889 * 359.97115 * 14 13 12 17 17 C 1.52999 * 109.47845 * 119.96996 * 14 13 12 18 18 N 1.29033 * 110.16836 * 359.73125 * 13 12 11 19 19 N 1.46502 * 109.46969 * 240.00729 * 2 1 3 20 20 C 1.36941 * 120.00103 * 84.99785 * 19 2 1 21 21 H 1.08000 * 119.99734 * 0.02562 * 20 19 2 22 22 C 1.38812 * 119.99814 * 180.02562 * 20 19 2 23 23 N 1.31613 * 120.00446 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 119.99795 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47202 * 59.99527 * 24 22 20 26 26 H 1.48499 * 109.46834 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.46977 * 299.99495 * 24 22 20 28 28 H 1.09004 * 109.47224 * 59.99257 * 1 2 3 29 29 H 1.09000 * 109.47346 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46964 * 299.99762 * 1 2 3 31 31 H 1.09002 * 109.47103 * 64.99566 * 4 2 1 32 32 H 1.08998 * 109.46862 * 305.00378 * 4 2 1 33 33 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 34 34 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 35 35 H 0.96996 * 119.99606 * 0.02562 * 6 5 4 36 36 H 1.09001 * 109.47380 * 300.00190 * 9 7 6 37 37 H 1.09002 * 109.47060 * 60.00278 * 9 7 6 38 38 H 1.08002 * 126.03951 * 359.97438 * 11 10 9 39 39 H 1.09002 * 109.46953 * 59.99843 * 15 14 13 40 40 H 1.09000 * 109.46889 * 179.97438 * 15 14 13 41 41 H 1.08994 * 109.46977 * 299.99278 * 15 14 13 42 42 H 1.09002 * 109.47350 * 60.00290 * 16 14 13 43 43 H 1.08999 * 109.46634 * 180.02562 * 16 14 13 44 44 H 1.09005 * 109.46915 * 300.00420 * 16 14 13 45 45 H 1.09004 * 109.46931 * 59.99552 * 17 14 13 46 46 H 1.08994 * 109.47296 * 179.97438 * 17 14 13 47 47 H 1.09004 * 109.46933 * 300.00842 * 17 14 13 48 48 H 0.97003 * 120.00235 * 265.00555 * 19 2 1 49 49 H 0.96996 * 120.00501 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5648 -0.6135 1.3135 6 7 4.0531 -1.3037 2.5099 7 6 5.3740 -1.3399 2.7750 8 8 6.1584 -0.8006 2.0235 9 6 5.8763 -2.0494 4.0060 10 6 7.3782 -1.9432 4.0694 11 6 8.0067 -0.8910 4.6020 12 16 9.7413 -1.1722 4.4716 13 6 9.4488 -2.6771 3.7144 14 6 10.5187 -3.6284 3.2441 15 6 10.3799 -3.8469 1.7361 16 6 11.8967 -3.0373 3.5491 17 6 10.3661 -4.9668 3.9695 18 7 8.1793 -2.8831 3.6096 19 7 2.0183 -0.6905 -1.1963 20 6 2.1490 -0.0072 -2.3758 21 1 1.8925 1.0408 -2.4241 22 6 2.6112 -0.6616 -3.5094 23 7 2.9242 -1.9386 -3.4505 24 14 2.7902 0.2706 -5.1183 25 1 3.7461 1.3924 -4.9367 26 1 3.2990 -0.6478 -6.1685 27 1 1.4682 0.8084 -5.5285 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.7516 -1.7716 1.2053 32 1 1.6054 -0.2620 2.1368 33 1 3.8532 0.4368 1.3572 34 1 3.9994 -1.0729 0.4257 35 1 3.4258 -1.7353 3.1108 36 1 5.4421 -1.5889 4.8935 37 1 5.5874 -3.0996 3.9633 38 1 7.5348 -0.0214 5.0352 39 1 10.4887 -2.8933 1.2194 40 1 11.1541 -4.5346 1.3959 41 1 9.3984 -4.2680 1.5189 42 1 11.9956 -2.8816 4.6234 43 1 12.6705 -3.7252 3.2085 44 1 12.0054 -2.0837 3.0323 45 1 9.3844 -5.3879 3.7523 46 1 11.1397 -5.6550 3.6290 47 1 10.4649 -4.8111 5.0439 48 1 2.2489 -1.6317 -1.1529 49 1 3.2475 -2.3958 -4.2425 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480797823.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:06 Heat of formation + Delta-G solvation = -6.240791 kcal Electronic energy + Delta-G solvation = -26682.852946 eV Core-core repulsion = 22964.258505 eV Total energy + Delta-G solvation = -3718.594441 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.43168 -39.15247 -37.03847 -36.48284 -34.29167 -32.32568 -31.78278 -29.43879 -28.44736 -27.72760 -27.54794 -27.47761 -25.13886 -23.82146 -22.62079 -20.93150 -20.16002 -19.53400 -19.41676 -17.65832 -17.28868 -16.86961 -16.04005 -15.56466 -15.36060 -14.99506 -14.77247 -14.37932 -14.08675 -14.00564 -13.96155 -13.47157 -13.31186 -13.19654 -13.16442 -12.59703 -12.46445 -12.40301 -12.17829 -12.01075 -11.93875 -11.69843 -11.52099 -11.42317 -11.28532 -11.19044 -11.02797 -10.88011 -10.70536 -10.60896 -10.27537 -10.00394 -9.69070 -9.66247 -9.59643 -9.42680 -8.88882 -8.80202 -8.75847 -6.91776 -5.71338 -3.00109 0.63891 1.27180 1.64507 2.61784 2.82712 3.46765 3.48076 3.52563 3.53346 3.79427 4.42448 4.61018 4.62495 4.63970 4.80981 4.99885 5.03451 5.14741 5.24149 5.25062 5.34360 5.35050 5.42493 5.47503 5.57151 5.59601 5.61129 5.65547 5.68348 5.71549 5.78782 5.90871 5.96328 6.06978 6.09566 6.16513 6.20192 6.37602 6.42486 6.51759 6.71393 6.75020 6.88959 7.08519 7.67596 7.69737 7.74580 8.42684 8.46956 9.58144 10.14988 10.49484 11.51255 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012319 B = 0.002339 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.302823 B =11967.363855 C =13368.672259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.048 0.952 4 C -0.132 4.132 5 C 0.123 3.877 6 N -0.729 5.729 7 C 0.512 3.488 8 O -0.528 6.528 9 C -0.068 4.068 10 C 0.093 3.907 11 C -0.251 4.251 12 S 0.116 5.884 13 C 0.064 3.936 14 C 0.011 3.989 15 C -0.136 4.136 16 C -0.153 4.153 17 C -0.133 4.133 18 N -0.459 5.459 19 N -0.723 5.723 20 C -0.238 4.238 21 H 0.069 0.931 22 C -0.013 4.013 23 N -0.933 5.933 24 Si 0.905 3.095 25 H -0.286 1.286 26 H -0.292 1.292 27 H -0.287 1.287 28 H 0.053 0.947 29 H 0.046 0.954 30 H 0.035 0.965 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.396 0.604 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.174 0.826 39 H 0.058 0.942 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.062 0.938 43 H 0.074 0.926 44 H 0.063 0.937 45 H 0.067 0.933 46 H 0.065 0.935 47 H 0.055 0.945 48 H 0.383 0.617 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.132 -3.277 23.142 26.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.063 3.937 3 H 0.066 0.934 4 C -0.170 4.170 5 C 0.000 4.000 6 N -0.381 5.381 7 C 0.296 3.704 8 O -0.404 6.404 9 C -0.111 4.111 10 C -0.039 4.039 11 C -0.390 4.390 12 S 0.373 5.627 13 C -0.215 4.215 14 C 0.007 3.993 15 C -0.195 4.195 16 C -0.211 4.211 17 C -0.192 4.192 18 N -0.173 5.173 19 N -0.365 5.365 20 C -0.370 4.370 21 H 0.087 0.913 22 C -0.209 4.209 23 N -0.581 5.581 24 Si 0.736 3.264 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.214 1.214 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.102 0.898 35 H 0.229 0.771 36 H 0.126 0.874 37 H 0.129 0.871 38 H 0.191 0.809 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.081 0.919 43 H 0.093 0.907 44 H 0.082 0.918 45 H 0.086 0.914 46 H 0.084 0.916 47 H 0.074 0.926 48 H 0.217 0.783 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 14.440 -2.652 22.492 26.859 hybrid contribution -1.285 0.037 -0.752 1.489 sum 13.155 -2.615 21.740 25.545 Atomic orbital electron populations 1.22426 0.99157 1.00819 0.99927 1.20152 0.91863 0.95563 0.86079 0.93358 1.22052 0.93919 1.01786 0.99279 1.21439 0.94342 0.97051 0.87145 1.46073 1.06990 1.57346 1.27676 1.20296 0.82526 0.80649 0.86915 1.90757 1.55176 1.45186 1.49279 1.20198 0.89403 1.03622 0.97899 1.19409 0.95915 0.90198 0.98417 1.26733 0.96066 1.04710 1.11455 1.83793 1.05877 1.17637 1.55417 1.26995 0.94690 0.97833 1.01939 1.19238 0.90129 0.92937 0.97017 1.21854 1.03106 1.02313 0.92192 1.22026 0.95296 1.01653 1.02164 1.21830 1.03027 0.94599 0.99695 1.65883 1.02083 1.30816 1.18474 1.42444 1.78100 1.10644 1.05335 1.19171 1.36658 0.93788 0.87350 0.91296 1.24723 1.02153 0.95952 0.98036 1.69639 1.50829 1.08666 1.28953 0.86298 0.77707 0.78676 0.83699 1.21272 1.21743 1.21358 0.92745 0.93525 0.94599 0.91600 0.91963 0.91970 0.89809 0.77061 0.87425 0.87125 0.80899 0.92313 0.91650 0.91238 0.91920 0.90686 0.91775 0.91372 0.91648 0.92632 0.78287 0.93506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 9.49 37.16 0.35 -2.51 16 2 C 0.17 3.37 2.89 -67.93 -0.20 3.17 16 3 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 4 C -0.13 -2.02 4.87 -26.74 -0.13 -2.15 16 5 C 0.12 2.08 5.56 -4.04 -0.02 2.06 16 6 N -0.73 -9.81 5.56 -60.29 -0.33 -10.15 16 7 C 0.51 7.74 7.82 -10.99 -0.09 7.65 16 8 O -0.53 -10.76 16.03 5.56 0.09 -10.68 16 9 C -0.07 -0.75 6.11 -29.03 -0.18 -0.93 16 10 C 0.09 1.21 5.23 -84.23 -0.44 0.77 16 11 C -0.25 -2.91 11.14 29.12 0.32 -2.59 16 12 S 0.12 1.21 21.57 -107.50 -2.32 -1.11 16 13 C 0.06 0.76 5.78 -13.46 -0.08 0.69 16 14 C 0.01 0.10 0.99 -155.66 -0.15 -0.05 16 15 C -0.14 -1.39 8.45 37.16 0.31 -1.07 16 16 C -0.15 -1.08 7.54 37.16 0.28 -0.80 16 17 C -0.13 -1.08 8.45 37.16 0.31 -0.76 16 18 N -0.46 -6.41 10.51 -8.06 -0.08 -6.50 16 19 N -0.72 -17.98 4.57 -53.43 -0.24 -18.22 16 20 C -0.24 -6.68 9.93 -15.06 -0.15 -6.83 16 21 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 22 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 23 N -0.93 -28.71 13.06 55.49 0.72 -27.99 16 24 Si 0.91 22.95 29.55 -169.99 -5.02 17.93 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 26 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 27 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 28 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.03 0.52 8.14 -51.92 -0.42 0.09 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.08 1.80 7.75 -51.93 -0.40 1.40 16 35 H 0.40 3.82 8.47 -40.82 -0.35 3.47 16 36 H 0.11 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.17 1.63 8.06 -52.49 -0.42 1.20 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.06 0.40 7.92 -51.93 -0.41 -0.01 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.47 7.92 -51.93 -0.41 0.06 16 45 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 47 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 48 H 0.38 10.19 7.80 -40.82 -0.32 9.87 16 49 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 416.21 15.07 6.27 6.27 Total: -1.00 -35.31 416.21 -9.49 -44.80 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: -8.62 Total: 9.47 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: 0.05 Total: -3.82 kcal Atomic # 7 Polarization: -62.91 SS G_CDS: 0.06 Total: -62.85 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.09 Total: -10.68 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.93 kcal Atomic # 16 Polarization: 1.21 SS G_CDS: -2.32 Total: -1.11 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -35.31 -9.49 -44.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480797823.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.555 kcal (2) G-P(sol) polarization free energy of solvation -35.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds