Wall clock time and date at job start Tue Mar 31 2020 22:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47166 * 2 1 4 4 C 1.52992 * 109.47448 * 120.00767 * 2 1 3 5 5 C 1.52997 * 109.47482 * 184.99813 * 4 2 1 6 6 N 1.46505 * 109.47212 * 179.97438 * 5 4 2 7 7 C 1.34771 * 119.99622 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00597 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99622 * 179.97438 * 7 6 5 10 10 C 1.50703 * 109.47064 * 180.02562 * 9 7 6 11 11 C 1.33634 * 122.74867 * 85.02900 * 10 9 7 12 12 S 1.76205 * 107.92629 * 180.02562 * 11 10 9 13 13 C 1.70982 * 90.27845 * 359.97438 * 12 11 10 14 14 C 1.50697 * 124.91585 * 180.02562 * 13 12 11 15 15 C 1.53002 * 109.46923 * 239.97369 * 14 13 12 16 16 C 1.53007 * 109.46889 * 359.97115 * 14 13 12 17 17 C 1.52999 * 109.47845 * 119.96996 * 14 13 12 18 18 N 1.29033 * 110.16836 * 359.73125 * 13 12 11 19 19 N 1.46502 * 109.46969 * 240.00729 * 2 1 3 20 20 C 1.36941 * 120.00103 * 84.99785 * 19 2 1 21 21 H 1.08000 * 119.99734 * 0.02562 * 20 19 2 22 22 C 1.38812 * 119.99814 * 180.02562 * 20 19 2 23 23 N 1.31613 * 120.00446 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 119.99795 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47202 * 59.99527 * 24 22 20 26 26 H 1.48499 * 109.46834 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.46977 * 299.99495 * 24 22 20 28 28 H 1.09004 * 109.47224 * 59.99257 * 1 2 3 29 29 H 1.09000 * 109.47346 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46964 * 299.99762 * 1 2 3 31 31 H 1.09002 * 109.47103 * 64.99566 * 4 2 1 32 32 H 1.08998 * 109.46862 * 305.00378 * 4 2 1 33 33 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 34 34 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 35 35 H 0.96996 * 119.99606 * 0.02562 * 6 5 4 36 36 H 1.09001 * 109.47380 * 300.00190 * 9 7 6 37 37 H 1.09002 * 109.47060 * 60.00278 * 9 7 6 38 38 H 1.08002 * 126.03951 * 359.97438 * 11 10 9 39 39 H 1.09002 * 109.46953 * 59.99843 * 15 14 13 40 40 H 1.09000 * 109.46889 * 179.97438 * 15 14 13 41 41 H 1.08994 * 109.46977 * 299.99278 * 15 14 13 42 42 H 1.09002 * 109.47350 * 60.00290 * 16 14 13 43 43 H 1.08999 * 109.46634 * 180.02562 * 16 14 13 44 44 H 1.09005 * 109.46915 * 300.00420 * 16 14 13 45 45 H 1.09004 * 109.46931 * 59.99552 * 17 14 13 46 46 H 1.08994 * 109.47296 * 179.97438 * 17 14 13 47 47 H 1.09004 * 109.46933 * 300.00842 * 17 14 13 48 48 H 0.97003 * 120.00235 * 265.00555 * 19 2 1 49 49 H 0.96996 * 120.00501 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5648 -0.6135 1.3135 6 7 4.0531 -1.3037 2.5099 7 6 5.3740 -1.3399 2.7750 8 8 6.1584 -0.8006 2.0235 9 6 5.8763 -2.0494 4.0060 10 6 7.3782 -1.9432 4.0694 11 6 8.0067 -0.8910 4.6020 12 16 9.7413 -1.1722 4.4716 13 6 9.4488 -2.6771 3.7144 14 6 10.5187 -3.6284 3.2441 15 6 10.3799 -3.8469 1.7361 16 6 11.8967 -3.0373 3.5491 17 6 10.3661 -4.9668 3.9695 18 7 8.1793 -2.8831 3.6096 19 7 2.0183 -0.6905 -1.1963 20 6 2.1490 -0.0072 -2.3758 21 1 1.8925 1.0408 -2.4241 22 6 2.6112 -0.6616 -3.5094 23 7 2.9242 -1.9386 -3.4505 24 14 2.7902 0.2706 -5.1183 25 1 3.7461 1.3924 -4.9367 26 1 3.2990 -0.6478 -6.1685 27 1 1.4682 0.8084 -5.5285 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.7516 -1.7716 1.2053 32 1 1.6054 -0.2620 2.1368 33 1 3.8532 0.4368 1.3572 34 1 3.9994 -1.0729 0.4257 35 1 3.4258 -1.7353 3.1108 36 1 5.4421 -1.5889 4.8935 37 1 5.5874 -3.0996 3.9633 38 1 7.5348 -0.0214 5.0352 39 1 10.4887 -2.8933 1.2194 40 1 11.1541 -4.5346 1.3959 41 1 9.3984 -4.2680 1.5189 42 1 11.9956 -2.8816 4.6234 43 1 12.6705 -3.7252 3.2085 44 1 12.0054 -2.0837 3.0323 45 1 9.3844 -5.3879 3.7523 46 1 11.1397 -5.6550 3.6290 47 1 10.4649 -4.8111 5.0439 48 1 2.2489 -1.6317 -1.1529 49 1 3.2475 -2.3958 -4.2425 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480797823.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:05 Heat of formation + Delta-G solvation = -30.814608 kcal Electronic energy + Delta-G solvation = -26683.918547 eV Core-core repulsion = 22964.258505 eV Total energy + Delta-G solvation = -3719.660042 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.40128 -40.29555 -38.18223 -37.68192 -35.81115 -34.16853 -32.83271 -31.06078 -29.88533 -28.65392 -28.34924 -28.20979 -26.08294 -25.76266 -24.02893 -22.10628 -21.42930 -20.72106 -20.26884 -19.28968 -18.52383 -18.09213 -17.12614 -16.85725 -16.62620 -16.34112 -15.83493 -15.69333 -15.38435 -15.12153 -14.97714 -14.85213 -14.64021 -14.28911 -14.13012 -14.07926 -13.56711 -13.37253 -13.23706 -13.11297 -12.97560 -12.80330 -12.64844 -12.63175 -12.44275 -12.31974 -12.29554 -12.19125 -12.11920 -11.99828 -11.91212 -11.65376 -11.60305 -11.01216 -10.91348 -10.55315 -10.29832 -10.08940 -9.67424 -8.98800 -7.93663 -5.20511 -0.23194 0.44717 0.78166 1.43758 1.47256 1.52669 1.62970 1.67453 2.38307 2.55886 3.00688 3.40299 3.63598 3.84768 3.91664 3.93039 3.95044 4.01606 4.12852 4.23390 4.26659 4.37090 4.38262 4.48367 4.64167 4.66373 4.71035 4.77252 4.78592 4.80513 4.88577 4.92949 4.94597 4.97967 5.02770 5.09106 5.11654 5.22439 5.25743 5.31964 5.39280 5.39862 5.47162 5.52655 5.61770 6.29208 6.59598 6.81816 7.30437 7.34915 8.13602 8.34346 9.29809 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012319 B = 0.002339 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.302823 B =11967.363855 C =13368.672259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.162 3.838 3 H 0.041 0.959 4 C -0.114 4.114 5 C 0.134 3.866 6 N -0.712 5.712 7 C 0.508 3.492 8 O -0.589 6.589 9 C -0.058 4.058 10 C 0.065 3.935 11 C -0.261 4.261 12 S 0.151 5.849 13 C 0.047 3.953 14 C 0.007 3.993 15 C -0.134 4.134 16 C -0.150 4.150 17 C -0.127 4.127 18 N -0.493 5.493 19 N -0.736 5.736 20 C -0.234 4.234 21 H 0.074 0.926 22 C -0.079 4.079 23 N -0.971 5.971 24 Si 0.967 3.033 25 H -0.282 1.282 26 H -0.297 1.297 27 H -0.275 1.275 28 H 0.031 0.969 29 H 0.045 0.955 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.108 0.892 33 H 0.049 0.951 34 H 0.029 0.971 35 H 0.419 0.581 36 H 0.152 0.848 37 H 0.124 0.876 38 H 0.193 0.807 39 H 0.042 0.958 40 H 0.089 0.911 41 H 0.041 0.959 42 H 0.072 0.928 43 H 0.095 0.905 44 H 0.058 0.942 45 H 0.048 0.952 46 H 0.085 0.915 47 H 0.062 0.938 48 H 0.371 0.629 49 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.929 -2.712 25.690 28.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.054 3.946 3 H 0.059 0.941 4 C -0.153 4.153 5 C 0.010 3.990 6 N -0.364 5.364 7 C 0.295 3.705 8 O -0.469 6.469 9 C -0.100 4.100 10 C -0.067 4.067 11 C -0.400 4.400 12 S 0.408 5.592 13 C -0.232 4.232 14 C 0.003 3.997 15 C -0.193 4.193 16 C -0.208 4.208 17 C -0.186 4.186 18 N -0.207 5.207 19 N -0.376 5.376 20 C -0.366 4.366 21 H 0.092 0.908 22 C -0.271 4.271 23 N -0.622 5.622 24 Si 0.796 3.204 25 H -0.209 1.209 26 H -0.224 1.224 27 H -0.201 1.201 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.126 0.874 33 H 0.067 0.933 34 H 0.047 0.953 35 H 0.257 0.743 36 H 0.169 0.831 37 H 0.142 0.858 38 H 0.210 0.790 39 H 0.061 0.939 40 H 0.108 0.892 41 H 0.061 0.939 42 H 0.091 0.909 43 H 0.113 0.887 44 H 0.077 0.923 45 H 0.067 0.933 46 H 0.104 0.896 47 H 0.081 0.919 48 H 0.203 0.797 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 14.177 -2.068 25.111 28.911 hybrid contribution -1.212 -0.075 -1.464 1.902 sum 12.965 -2.143 23.648 27.054 Atomic orbital electron populations 1.22256 0.97014 1.01056 1.00890 1.20480 0.93239 0.95157 0.85730 0.94067 1.21907 0.92327 1.02074 0.98953 1.21055 0.95395 0.95967 0.86562 1.45842 1.07237 1.56641 1.26717 1.21103 0.82260 0.79701 0.87464 1.90730 1.56696 1.47901 1.51550 1.20258 0.88562 1.04067 0.97067 1.19779 0.96920 0.90753 0.99219 1.27106 0.96998 1.04904 1.10999 1.83564 1.04963 1.16351 1.54361 1.27519 0.94822 0.98934 1.01878 1.19408 0.90758 0.93397 0.96146 1.21833 1.02379 1.01819 0.93224 1.22026 0.94201 1.01726 1.02831 1.21789 1.02627 0.94143 1.00028 1.65919 1.03164 1.32080 1.19549 1.42656 1.78414 1.10204 1.06347 1.19570 1.34498 0.94061 0.88477 0.90827 1.25509 1.03320 0.96879 1.01427 1.69801 1.52896 1.10218 1.29287 0.85300 0.77979 0.77294 0.79782 1.20892 1.22367 1.20101 0.94944 0.93627 0.90447 0.91013 0.87353 0.93256 0.95259 0.74324 0.83050 0.85822 0.78996 0.93869 0.89202 0.93936 0.90917 0.88661 0.92324 0.93324 0.89585 0.91916 0.79734 0.94291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.01 9.49 71.98 0.68 -4.33 16 2 C 0.16 6.12 2.89 44.99 0.13 6.25 16 3 H 0.04 1.62 8.08 -2.39 -0.02 1.60 16 4 C -0.11 -3.27 4.87 30.59 0.15 -3.12 16 5 C 0.13 4.57 5.56 86.38 0.48 5.05 16 6 N -0.71 -18.33 5.56 -463.06 -2.57 -20.90 16 7 C 0.51 15.23 7.82 87.66 0.69 15.92 16 8 O -0.59 -24.89 16.03 -3.03 -0.05 -24.93 16 9 C -0.06 -1.18 6.11 29.10 0.18 -1.00 16 10 C 0.07 1.67 5.23 41.52 0.22 1.89 16 11 C -0.26 -5.82 11.14 66.77 0.74 -5.08 16 12 S 0.15 3.01 21.57 -56.49 -1.22 1.79 16 13 C 0.05 1.11 5.78 88.52 0.51 1.62 16 14 C 0.01 0.12 0.99 -52.93 -0.05 0.07 16 15 C -0.13 -2.81 8.45 71.98 0.61 -2.20 16 16 C -0.15 -1.88 7.54 71.98 0.54 -1.34 16 17 C -0.13 -1.95 8.45 71.98 0.61 -1.34 16 18 N -0.49 -13.97 10.51 -179.40 -1.89 -15.86 16 19 N -0.74 -37.21 4.57 -322.95 -1.48 -38.69 16 20 C -0.23 -13.30 9.93 84.03 0.83 -12.47 16 21 H 0.07 4.03 7.83 -2.91 -0.02 4.00 16 22 C -0.08 -4.73 5.50 84.86 0.47 -4.27 16 23 N -0.97 -61.77 13.06 21.65 0.28 -61.49 16 24 Si 0.97 48.13 29.55 68.60 2.03 50.16 16 25 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 26 H -0.30 -14.95 7.11 99.48 0.71 -14.24 16 27 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 28 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 29 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 31 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.03 1.32 7.75 -2.39 -0.02 1.30 16 35 H 0.42 6.87 8.47 -92.71 -0.79 6.09 16 36 H 0.15 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.19 3.29 8.06 -2.91 -0.02 3.26 16 39 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.07 0.77 7.92 -2.39 -0.02 0.75 16 43 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.06 0.80 7.92 -2.38 -0.02 0.78 16 45 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 48 H 0.37 20.37 7.80 -92.71 -0.72 19.65 16 49 H 0.25 15.46 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -81.80 416.21 1.32 -80.48 By element: Atomic # 1 Polarization: 34.35 SS G_CDS: -0.57 Total: 33.78 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: 6.79 Total: -4.33 kcal Atomic # 7 Polarization: -131.29 SS G_CDS: -5.65 Total: -136.94 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: -0.05 Total: -24.93 kcal Atomic # 14 Polarization: 48.13 SS G_CDS: 2.03 Total: 50.16 kcal Atomic # 16 Polarization: 3.01 SS G_CDS: -1.22 Total: 1.79 kcal Total: -81.80 1.32 -80.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480797823.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.668 kcal (2) G-P(sol) polarization free energy of solvation -81.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds