Wall clock time and date at job start Tue Mar 31 2020 23:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.47207 * 2 1 4 4 C 1.46499 * 119.99758 * 89.51081 * 3 2 1 5 5 C 1.53005 * 109.47040 * 89.99727 * 4 3 2 6 6 N 1.46500 * 109.47313 * 179.97438 * 5 4 3 7 7 C 1.36928 * 120.00346 * 180.02562 * 6 5 4 8 8 H 1.08009 * 119.99967 * 0.02562 * 7 6 5 9 9 C 1.38807 * 120.00383 * 180.02562 * 7 6 5 10 10 N 1.31617 * 120.00643 * 180.02562 * 9 7 6 11 11 Si 1.86805 * 119.99905 * 359.97438 * 9 7 6 12 12 H 1.48508 * 109.46942 * 89.99863 * 11 9 7 13 13 H 1.48495 * 109.47574 * 209.99990 * 11 9 7 14 14 H 1.48498 * 109.47131 * 330.00401 * 11 9 7 15 15 C 1.34776 * 119.99956 * 269.50900 * 3 2 1 16 16 O 1.21682 * 119.99810 * 186.42560 * 15 3 2 17 17 C 1.46678 * 120.00407 * 6.42927 * 15 3 2 18 18 C 1.35658 * 126.13263 * 188.44042 * 17 15 3 19 19 N 1.30942 * 114.19029 * 180.02562 * 18 17 15 20 20 C 1.29434 * 117.36883 * 359.97438 * 19 18 17 21 21 C 1.50699 * 124.80758 * 180.02562 * 20 19 18 22 22 C 1.52996 * 109.46902 * 89.97486 * 21 20 19 23 23 C 1.52993 * 109.47305 * 60.00011 * 22 21 20 24 24 C 1.53004 * 109.47044 * 179.97438 * 22 21 20 25 25 C 1.53000 * 109.47220 * 299.99960 * 22 21 20 26 26 S 1.70956 * 110.38346 * 359.72637 * 20 19 18 27 27 H 1.08998 * 109.47368 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46690 * 300.00024 * 1 2 3 29 29 H 1.09006 * 109.47109 * 59.99748 * 1 2 3 30 30 H 1.08997 * 109.47111 * 120.00488 * 2 1 3 31 31 H 1.09001 * 109.47125 * 240.00237 * 2 1 3 32 32 H 1.09003 * 109.47301 * 209.99557 * 4 3 2 33 33 H 1.08999 * 109.47067 * 329.99905 * 4 3 2 34 34 H 1.08991 * 109.47307 * 300.00125 * 5 4 3 35 35 H 1.09004 * 109.46635 * 59.99952 * 5 4 3 36 36 H 0.97005 * 119.99437 * 0.02562 * 6 5 4 37 37 H 0.97001 * 120.00740 * 180.02562 * 10 9 7 38 38 H 1.07997 * 122.90704 * 0.03132 * 18 17 15 39 39 H 1.08995 * 109.47140 * 209.97502 * 21 20 19 40 40 H 1.08996 * 109.46868 * 329.97596 * 21 20 19 41 41 H 1.09007 * 109.47421 * 59.99626 * 23 22 21 42 42 H 1.09005 * 109.47548 * 179.97438 * 23 22 21 43 43 H 1.08995 * 109.47392 * 299.99915 * 23 22 21 44 44 H 1.09005 * 109.46923 * 60.00155 * 24 22 21 45 45 H 1.08995 * 109.47465 * 179.97438 * 24 22 21 46 46 H 1.08995 * 109.47161 * 300.00116 * 24 22 21 47 47 H 1.08999 * 109.47434 * 60.00451 * 25 22 21 48 48 H 1.09004 * 109.46909 * 180.02562 * 25 22 21 49 49 H 1.09005 * 109.47239 * 300.00146 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2523 2.0754 1.2687 5 6 3.6937 1.8362 1.7227 6 7 3.9279 2.5308 2.9911 7 6 5.1554 2.4604 3.5939 8 1 5.9511 1.8931 3.1340 9 6 5.3771 3.1181 4.7959 10 7 6.5571 3.0509 5.3751 11 14 4.0011 4.1000 5.5911 12 1 3.2267 3.2189 6.5018 13 1 4.5806 5.2262 6.3663 14 1 3.1021 4.6352 4.5373 15 6 2.2524 2.0132 -1.1672 16 8 2.7674 3.1157 -1.1694 17 6 1.8864 1.3722 -2.4347 18 6 2.2059 1.8150 -3.6765 19 7 1.7574 1.0594 -4.6474 20 6 1.0805 0.0066 -4.3179 21 6 0.4888 -0.9764 -5.2950 22 6 1.5072 -2.0800 -5.5878 23 6 1.8624 -2.8042 -4.2878 24 6 0.9063 -3.0784 -6.5794 25 6 2.7710 -1.4615 -6.1887 26 16 0.9597 -0.1154 -2.6169 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 2.0865 3.1443 1.1340 33 1 1.5654 1.6934 2.0239 34 1 3.8596 0.7674 1.8574 35 1 4.3806 2.2181 0.9674 36 1 3.2133 3.0406 3.4039 37 1 6.7120 3.5102 6.2153 38 1 2.7804 2.7129 -3.8495 39 1 -0.4115 -1.4170 -4.8669 40 1 0.2358 -0.4604 -6.2211 41 1 0.9620 -3.2449 -3.8596 42 1 2.5876 -3.5908 -4.4965 43 1 2.2903 -2.0933 -3.5810 44 1 0.6529 -2.5627 -7.5057 45 1 1.6319 -3.8644 -6.7884 46 1 0.0061 -3.5190 -6.1509 47 1 3.1990 -0.7505 -5.4820 48 1 3.4963 -2.2479 -6.3977 49 1 2.5179 -0.9455 -7.1150 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482961574.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:09 Heat of formation + Delta-G solvation = 18.531869 kcal Electronic energy + Delta-G solvation = -27528.149975 eV Core-core repulsion = 23810.629757 eV Total energy + Delta-G solvation = -3717.520218 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.46331 -39.71413 -37.78020 -36.38872 -34.88607 -32.17927 -31.29363 -30.71815 -29.06232 -27.74945 -27.71688 -27.49350 -24.75791 -23.88194 -23.59010 -21.72913 -20.83210 -19.82256 -18.59207 -18.55179 -17.55883 -16.91780 -16.44262 -15.91414 -15.45272 -15.10263 -14.90243 -14.74003 -14.47568 -14.24498 -14.02315 -13.85319 -13.67209 -13.55690 -13.40015 -12.94076 -12.82516 -12.65118 -12.49188 -12.23678 -12.14698 -12.03425 -11.74680 -11.73601 -11.60511 -11.34568 -11.20451 -11.17080 -11.11740 -11.11612 -10.76545 -10.17907 -10.10347 -9.68193 -9.59694 -9.45008 -9.02305 -8.89598 -8.69247 -7.24540 -5.75723 -3.12235 0.04990 0.96792 1.38604 2.31111 2.80280 3.10632 3.38293 3.41125 3.46322 3.75365 4.29048 4.31635 4.32901 4.48541 4.56185 4.59990 4.81447 4.83182 5.00827 5.05190 5.07355 5.11555 5.20914 5.29742 5.34644 5.36920 5.37868 5.39250 5.42190 5.53049 5.54798 5.57089 5.58068 5.65229 5.71001 5.79919 5.85126 5.88363 5.90660 5.93525 6.03393 6.34537 6.59306 6.78065 7.22743 7.45892 7.98102 8.04415 8.42288 9.20618 9.92665 10.11777 11.42543 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023005 B = 0.002350 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.811494 B =11910.090404 C =11921.865117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.089 3.911 3 N -0.602 5.602 4 C 0.108 3.892 5 C 0.146 3.854 6 N -0.753 5.753 7 C -0.243 4.243 8 H 0.090 0.910 9 C 0.004 3.996 10 N -0.934 5.934 11 Si 0.885 3.115 12 H -0.284 1.284 13 H -0.290 1.290 14 H -0.276 1.276 15 C 0.591 3.409 16 O -0.515 6.515 17 C -0.299 4.299 18 C 0.121 3.879 19 N -0.478 5.478 20 C 0.029 3.971 21 C -0.038 4.038 22 C -0.063 4.063 23 C -0.154 4.154 24 C -0.140 4.140 25 C -0.141 4.141 26 S 0.205 5.795 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.099 0.901 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.027 0.973 35 H 0.033 0.967 36 H 0.361 0.639 37 H 0.260 0.740 38 H 0.186 0.814 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.059 0.941 42 H 0.062 0.938 43 H 0.056 0.944 44 H 0.057 0.943 45 H 0.060 0.940 46 H 0.057 0.943 47 H 0.059 0.941 48 H 0.053 0.947 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.432 -14.872 -23.723 33.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.036 4.036 3 N -0.335 5.335 4 C -0.014 4.014 5 C 0.017 3.983 6 N -0.399 5.399 7 C -0.373 4.373 8 H 0.108 0.892 9 C -0.192 4.192 10 N -0.582 5.582 11 Si 0.716 3.284 12 H -0.210 1.210 13 H -0.216 1.216 14 H -0.203 1.203 15 C 0.378 3.622 16 O -0.392 6.392 17 C -0.423 4.423 18 C -0.037 4.037 19 N -0.192 5.192 20 C -0.245 4.245 21 C -0.079 4.079 22 C -0.065 4.065 23 C -0.211 4.211 24 C -0.197 4.197 25 C -0.198 4.198 26 S 0.464 5.536 27 H 0.095 0.905 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.118 0.882 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.045 0.955 35 H 0.051 0.949 36 H 0.193 0.807 37 H 0.070 0.930 38 H 0.202 0.798 39 H 0.104 0.896 40 H 0.112 0.888 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.079 0.921 46 H 0.076 0.924 47 H 0.078 0.922 48 H 0.073 0.927 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.322 -14.973 -23.581 33.406 hybrid contribution -0.305 1.527 0.543 1.650 sum -18.627 -13.445 -23.038 32.534 Atomic orbital electron populations 1.22415 0.95328 1.03205 1.02923 1.21931 0.94994 0.82939 1.03694 1.47718 1.65760 1.13964 1.06071 1.21770 0.98509 0.98218 0.82890 1.20899 0.92761 0.95904 0.88693 1.42549 1.12740 1.61414 1.23219 1.19025 0.88651 1.27004 1.02596 0.89235 1.24675 0.96528 1.00329 0.97636 1.69699 1.21245 1.47826 1.19392 0.86527 0.82282 0.80282 0.79349 1.21049 1.21641 1.20254 1.16820 0.78551 0.85011 0.81838 1.90886 1.42249 1.19666 1.86366 1.25818 1.13843 1.03121 0.99504 1.22175 0.96934 0.99283 0.85292 1.66320 1.12123 1.04752 1.36048 1.27924 0.99171 0.97149 1.00212 1.20467 0.97399 0.92819 0.97216 1.20518 0.95460 0.94239 0.96242 1.22080 1.01904 1.00557 0.96557 1.21850 1.00793 0.98509 0.98539 1.21878 0.96245 1.00453 1.01227 1.84570 1.48375 1.20007 1.00684 0.90519 0.91161 0.91827 0.88245 0.90199 0.89581 0.90167 0.95506 0.94863 0.80666 0.93024 0.79758 0.89570 0.88768 0.92217 0.91923 0.92466 0.92344 0.92132 0.92413 0.92194 0.92747 0.92326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.35 9.04 37.16 0.34 -1.01 16 2 C 0.09 0.86 5.62 -4.04 -0.02 0.84 16 3 N -0.60 -8.24 2.47 -175.23 -0.43 -8.67 16 4 C 0.11 1.73 5.48 -4.04 -0.02 1.70 16 5 C 0.15 2.95 6.58 -4.04 -0.03 2.93 16 6 N -0.75 -18.46 5.41 -59.91 -0.32 -18.78 16 7 C -0.24 -7.09 10.47 -15.07 -0.16 -7.25 16 8 H 0.09 2.80 8.06 -52.48 -0.42 2.38 16 9 C 0.00 0.12 5.50 -17.43 -0.10 0.03 16 10 N -0.93 -29.83 13.97 55.49 0.78 -29.05 16 11 Si 0.89 22.37 27.74 -169.99 -4.71 17.66 16 12 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 14 H -0.28 -6.60 6.52 56.52 0.37 -6.23 16 15 C 0.59 9.08 7.62 -12.85 -0.10 8.98 16 16 O -0.51 -9.94 16.53 5.20 0.09 -9.85 16 17 C -0.30 -3.70 6.19 -37.10 -0.23 -3.93 16 18 C 0.12 1.48 11.10 -18.85 -0.21 1.27 16 19 N -0.48 -5.39 9.66 -11.50 -0.11 -5.50 16 20 C 0.03 0.26 4.94 -13.29 -0.07 0.19 16 21 C -0.04 -0.24 4.86 -27.89 -0.14 -0.38 16 22 C -0.06 -0.37 0.80 -154.51 -0.12 -0.50 16 23 C -0.15 -0.91 8.01 37.15 0.30 -0.61 16 24 C -0.14 -0.62 8.47 37.16 0.31 -0.31 16 25 C -0.14 -1.05 8.17 37.16 0.30 -0.75 16 26 S 0.20 1.71 13.92 -107.50 -1.50 0.22 16 27 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.50 5.97 -42.16 -0.25 0.25 16 30 H 0.10 0.91 8.08 -51.93 -0.42 0.49 16 31 H 0.08 0.71 4.64 -24.74 -0.11 0.60 16 32 H 0.09 1.50 7.52 -51.93 -0.39 1.11 16 33 H 0.08 1.10 8.07 -51.93 -0.42 0.68 16 34 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.36 8.48 5.53 -40.82 -0.23 8.25 16 37 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 38 H 0.19 2.22 8.06 -52.49 -0.42 1.79 16 39 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.06 0.41 6.01 -51.93 -0.31 0.09 16 44 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 45 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 46 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 47 H 0.06 0.57 6.64 -51.93 -0.34 0.23 16 48 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 396.00 15.07 5.97 5.97 Total: -1.00 -35.20 396.00 -8.17 -43.38 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -7.99 Total: 3.42 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: 0.07 Total: 1.22 kcal Atomic # 7 Polarization: -61.91 SS G_CDS: -0.09 Total: -62.01 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.09 Total: -9.85 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.71 Total: 17.66 kcal Atomic # 16 Polarization: 1.71 SS G_CDS: -1.50 Total: 0.22 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.20 -8.17 -43.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482961574.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.907 kcal (2) G-P(sol) polarization free energy of solvation -35.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds