Wall clock time and date at job start Tue Mar 31 2020 23:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.47207 * 2 1 4 4 C 1.46499 * 119.99758 * 89.51081 * 3 2 1 5 5 C 1.53005 * 109.47040 * 89.99727 * 4 3 2 6 6 N 1.46500 * 109.47313 * 179.97438 * 5 4 3 7 7 C 1.36928 * 120.00346 * 180.02562 * 6 5 4 8 8 H 1.08009 * 119.99967 * 0.02562 * 7 6 5 9 9 C 1.38807 * 120.00383 * 180.02562 * 7 6 5 10 10 N 1.31617 * 120.00643 * 180.02562 * 9 7 6 11 11 Si 1.86805 * 119.99905 * 359.97438 * 9 7 6 12 12 H 1.48508 * 109.46942 * 89.99863 * 11 9 7 13 13 H 1.48495 * 109.47574 * 209.99990 * 11 9 7 14 14 H 1.48498 * 109.47131 * 330.00401 * 11 9 7 15 15 C 1.34776 * 119.99956 * 269.50900 * 3 2 1 16 16 O 1.21682 * 119.99810 * 186.42560 * 15 3 2 17 17 C 1.46678 * 120.00407 * 6.42927 * 15 3 2 18 18 C 1.35658 * 126.13263 * 188.44042 * 17 15 3 19 19 N 1.30942 * 114.19029 * 180.02562 * 18 17 15 20 20 C 1.29434 * 117.36883 * 359.97438 * 19 18 17 21 21 C 1.50699 * 124.80758 * 180.02562 * 20 19 18 22 22 C 1.52996 * 109.46902 * 89.97486 * 21 20 19 23 23 C 1.52993 * 109.47305 * 60.00011 * 22 21 20 24 24 C 1.53004 * 109.47044 * 179.97438 * 22 21 20 25 25 C 1.53000 * 109.47220 * 299.99960 * 22 21 20 26 26 S 1.70956 * 110.38346 * 359.72637 * 20 19 18 27 27 H 1.08998 * 109.47368 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46690 * 300.00024 * 1 2 3 29 29 H 1.09006 * 109.47109 * 59.99748 * 1 2 3 30 30 H 1.08997 * 109.47111 * 120.00488 * 2 1 3 31 31 H 1.09001 * 109.47125 * 240.00237 * 2 1 3 32 32 H 1.09003 * 109.47301 * 209.99557 * 4 3 2 33 33 H 1.08999 * 109.47067 * 329.99905 * 4 3 2 34 34 H 1.08991 * 109.47307 * 300.00125 * 5 4 3 35 35 H 1.09004 * 109.46635 * 59.99952 * 5 4 3 36 36 H 0.97005 * 119.99437 * 0.02562 * 6 5 4 37 37 H 0.97001 * 120.00740 * 180.02562 * 10 9 7 38 38 H 1.07997 * 122.90704 * 0.03132 * 18 17 15 39 39 H 1.08995 * 109.47140 * 209.97502 * 21 20 19 40 40 H 1.08996 * 109.46868 * 329.97596 * 21 20 19 41 41 H 1.09007 * 109.47421 * 59.99626 * 23 22 21 42 42 H 1.09005 * 109.47548 * 179.97438 * 23 22 21 43 43 H 1.08995 * 109.47392 * 299.99915 * 23 22 21 44 44 H 1.09005 * 109.46923 * 60.00155 * 24 22 21 45 45 H 1.08995 * 109.47465 * 179.97438 * 24 22 21 46 46 H 1.08995 * 109.47161 * 300.00116 * 24 22 21 47 47 H 1.08999 * 109.47434 * 60.00451 * 25 22 21 48 48 H 1.09004 * 109.46909 * 180.02562 * 25 22 21 49 49 H 1.09005 * 109.47239 * 300.00146 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2523 2.0754 1.2687 5 6 3.6937 1.8362 1.7227 6 7 3.9279 2.5308 2.9911 7 6 5.1554 2.4604 3.5939 8 1 5.9511 1.8931 3.1340 9 6 5.3771 3.1181 4.7959 10 7 6.5571 3.0509 5.3751 11 14 4.0011 4.1000 5.5911 12 1 3.2267 3.2189 6.5018 13 1 4.5806 5.2262 6.3663 14 1 3.1021 4.6352 4.5373 15 6 2.2524 2.0132 -1.1672 16 8 2.7674 3.1157 -1.1694 17 6 1.8864 1.3722 -2.4347 18 6 2.2059 1.8150 -3.6765 19 7 1.7574 1.0594 -4.6474 20 6 1.0805 0.0066 -4.3179 21 6 0.4888 -0.9764 -5.2950 22 6 1.5072 -2.0800 -5.5878 23 6 1.8624 -2.8042 -4.2878 24 6 0.9063 -3.0784 -6.5794 25 6 2.7710 -1.4615 -6.1887 26 16 0.9597 -0.1154 -2.6169 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 2.0865 3.1443 1.1340 33 1 1.5654 1.6934 2.0239 34 1 3.8596 0.7674 1.8574 35 1 4.3806 2.2181 0.9674 36 1 3.2133 3.0406 3.4039 37 1 6.7120 3.5102 6.2153 38 1 2.7804 2.7129 -3.8495 39 1 -0.4115 -1.4170 -4.8669 40 1 0.2358 -0.4604 -6.2211 41 1 0.9620 -3.2449 -3.8596 42 1 2.5876 -3.5908 -4.4965 43 1 2.2903 -2.0933 -3.5810 44 1 0.6529 -2.5627 -7.5057 45 1 1.6319 -3.8644 -6.7884 46 1 0.0061 -3.5190 -6.1509 47 1 3.1990 -0.7505 -5.4820 48 1 3.4963 -2.2479 -6.3977 49 1 2.5179 -0.9455 -7.1150 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482961574.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:08 Heat of formation + Delta-G solvation = -4.972067 kcal Electronic energy + Delta-G solvation = -27529.169182 eV Core-core repulsion = 23810.629757 eV Total energy + Delta-G solvation = -3718.539425 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.45781 -40.64905 -38.35459 -37.67770 -36.62601 -33.94503 -32.46292 -31.79361 -30.16328 -28.81005 -28.16709 -28.08544 -25.95433 -25.05803 -24.53951 -23.48399 -21.97847 -20.50942 -19.92651 -19.33344 -19.22986 -17.88665 -17.48098 -16.91368 -16.55779 -16.24652 -15.95841 -15.58836 -15.50586 -15.40040 -15.29981 -15.21064 -14.79184 -14.58372 -14.44284 -13.98273 -13.83223 -13.49927 -13.38518 -13.05812 -12.95957 -12.88149 -12.78638 -12.65429 -12.55408 -12.50112 -12.42873 -12.34308 -12.14257 -11.88545 -11.86046 -11.69516 -11.58190 -11.27255 -11.02941 -10.47474 -10.32912 -9.96898 -9.62834 -9.39211 -8.06733 -5.43086 -0.80663 0.16853 0.59255 1.36400 1.36743 1.41806 1.48825 1.71817 2.05783 2.46072 3.04421 3.23786 3.39322 3.64935 3.79397 3.82417 3.85413 3.93036 4.02207 4.05740 4.19158 4.23820 4.28820 4.40989 4.47107 4.53325 4.61942 4.74838 4.76451 4.83331 4.85001 4.92145 4.94804 4.97795 4.99238 5.01921 5.08417 5.12039 5.23651 5.29506 5.36048 5.37805 5.46167 5.51430 5.68802 6.13448 6.15724 6.64629 6.88345 7.01647 7.73906 7.96075 9.14553 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023005 B = 0.002350 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.811494 B =11910.090404 C =11921.865117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.079 3.921 3 N -0.599 5.599 4 C 0.122 3.878 5 C 0.148 3.852 6 N -0.753 5.753 7 C -0.243 4.243 8 H 0.050 0.950 9 C -0.063 4.063 10 N -0.982 5.982 11 Si 0.962 3.038 12 H -0.267 1.267 13 H -0.295 1.295 14 H -0.253 1.253 15 C 0.587 3.413 16 O -0.570 6.570 17 C -0.335 4.335 18 C 0.116 3.884 19 N -0.501 5.501 20 C 0.029 3.971 21 C -0.041 4.041 22 C -0.059 4.059 23 C -0.156 4.156 24 C -0.136 4.136 25 C -0.141 4.141 26 S 0.286 5.714 27 H 0.109 0.891 28 H 0.070 0.930 29 H 0.059 0.941 30 H 0.111 0.889 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.114 0.886 34 H 0.036 0.964 35 H 0.000 1.000 36 H 0.369 0.631 37 H 0.260 0.740 38 H 0.173 0.827 39 H 0.116 0.884 40 H 0.096 0.904 41 H 0.079 0.921 42 H 0.063 0.937 43 H 0.041 0.959 44 H 0.059 0.941 45 H 0.061 0.939 46 H 0.073 0.927 47 H 0.034 0.966 48 H 0.057 0.943 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.465 -17.130 -24.047 37.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.044 4.044 3 N -0.331 5.331 4 C -0.002 4.002 5 C 0.021 3.979 6 N -0.400 5.400 7 C -0.373 4.373 8 H 0.069 0.931 9 C -0.255 4.255 10 N -0.632 5.632 11 Si 0.788 3.212 12 H -0.192 1.192 13 H -0.222 1.222 14 H -0.178 1.178 15 C 0.375 3.625 16 O -0.451 6.451 17 C -0.459 4.459 18 C -0.043 4.043 19 N -0.216 5.216 20 C -0.243 4.243 21 C -0.082 4.082 22 C -0.061 4.061 23 C -0.214 4.214 24 C -0.193 4.193 25 C -0.198 4.198 26 S 0.546 5.454 27 H 0.128 0.872 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.129 0.871 31 H 0.105 0.895 32 H 0.088 0.912 33 H 0.132 0.868 34 H 0.054 0.946 35 H 0.019 0.981 36 H 0.203 0.797 37 H 0.069 0.931 38 H 0.190 0.810 39 H 0.134 0.866 40 H 0.114 0.886 41 H 0.098 0.902 42 H 0.082 0.918 43 H 0.060 0.940 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.091 0.909 47 H 0.053 0.947 48 H 0.076 0.924 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -22.416 -17.304 -23.936 37.078 hybrid contribution 1.035 2.081 0.522 2.382 sum -21.381 -15.222 -23.414 35.172 Atomic orbital electron populations 1.22420 0.93006 1.05288 1.02784 1.22291 0.96871 0.80540 1.04663 1.47797 1.65158 1.15377 1.04760 1.21501 0.95936 0.98046 0.84672 1.20957 0.95269 0.95522 0.86157 1.42473 1.11306 1.61906 1.24280 1.18962 0.89559 1.26122 1.02699 0.93144 1.25605 0.99565 1.01945 0.98392 1.69893 1.23987 1.49308 1.20035 0.85316 0.78954 0.78303 0.78650 1.19224 1.22161 1.17785 1.17254 0.77633 0.84524 0.83080 1.90842 1.44809 1.22140 1.87300 1.25614 1.16343 1.05945 0.97977 1.22136 0.96967 0.99342 0.85882 1.66373 1.13429 1.05854 1.35919 1.28543 0.97542 0.96544 1.01683 1.20701 0.98296 0.92269 0.96910 1.20511 0.94511 0.94359 0.96731 1.22118 1.02849 1.00271 0.96135 1.21823 1.01325 0.98006 0.98176 1.21878 0.97329 1.00056 1.00549 1.84060 1.45851 1.16299 0.99166 0.87234 0.91082 0.92233 0.87092 0.89522 0.91191 0.86781 0.94592 0.98140 0.79688 0.93102 0.81033 0.86630 0.88557 0.90193 0.91778 0.93970 0.92153 0.92040 0.90851 0.94700 0.92399 0.92599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.95 9.04 71.98 0.65 -1.30 16 2 C 0.08 1.32 5.62 86.38 0.49 1.81 16 3 N -0.60 -15.91 2.47 -826.52 -2.04 -17.96 16 4 C 0.12 3.76 5.48 86.38 0.47 4.23 16 5 C 0.15 6.08 6.58 86.38 0.57 6.65 16 6 N -0.75 -36.82 5.41 -343.45 -1.86 -38.68 16 7 C -0.24 -14.50 10.47 84.03 0.88 -13.62 16 8 H 0.05 3.33 8.06 -2.91 -0.02 3.31 16 9 C -0.06 -3.84 5.50 84.86 0.47 -3.37 16 10 N -0.98 -64.35 13.97 21.65 0.30 -64.05 16 11 Si 0.96 45.93 27.74 68.60 1.90 47.83 16 12 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 13 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 14 H -0.25 -11.01 6.52 99.48 0.65 -10.37 16 15 C 0.59 18.48 7.62 86.45 0.66 19.14 16 16 O -0.57 -23.38 16.53 -4.29 -0.07 -23.45 16 17 C -0.33 -8.33 6.19 23.88 0.15 -8.18 16 18 C 0.12 2.99 11.10 84.23 0.94 3.92 16 19 N -0.50 -11.29 9.66 -190.30 -1.84 -13.13 16 20 C 0.03 0.47 4.94 88.46 0.44 0.91 16 21 C -0.04 -0.40 4.86 29.85 0.15 -0.25 16 22 C -0.06 -0.56 0.80 -52.18 -0.04 -0.60 16 23 C -0.16 -1.40 8.01 71.98 0.58 -0.82 16 24 C -0.14 -0.79 8.47 71.98 0.61 -0.18 16 25 C -0.14 -1.99 8.17 71.98 0.59 -1.40 16 26 S 0.29 4.10 13.92 -56.49 -0.79 3.31 16 27 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.06 0.73 5.97 -8.59 -0.05 0.68 16 30 H 0.11 1.66 8.08 -2.39 -0.02 1.64 16 31 H 0.09 1.31 4.64 -19.68 -0.09 1.22 16 32 H 0.07 2.43 7.52 -2.39 -0.02 2.41 16 33 H 0.11 2.78 8.07 -2.39 -0.02 2.76 16 34 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.00 0.02 8.14 -2.38 -0.02 0.00 16 36 H 0.37 16.73 5.53 -92.70 -0.51 16.21 16 37 H 0.26 16.10 8.31 -92.71 -0.77 15.33 16 38 H 0.17 4.62 8.06 -2.91 -0.02 4.60 16 39 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 40 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.08 0.40 8.14 -2.38 -0.02 0.38 16 42 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 43 H 0.04 0.50 6.01 -2.39 -0.01 0.49 16 44 H 0.06 0.35 8.14 -2.38 -0.02 0.33 16 45 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 46 H 0.07 0.23 8.14 -2.39 -0.02 0.21 16 47 H 0.03 0.67 6.64 -2.39 -0.02 0.65 16 48 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 49 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 Total: -1.00 -81.10 396.00 3.44 -77.66 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: 0.25 Total: 21.54 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: 7.58 Total: 6.93 kcal Atomic # 7 Polarization: -128.38 SS G_CDS: -5.44 Total: -133.81 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.07 Total: -23.45 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 1.90 Total: 47.83 kcal Atomic # 16 Polarization: 4.10 SS G_CDS: -0.79 Total: 3.31 kcal Total: -81.10 3.44 -77.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482961574.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.688 kcal (2) G-P(sol) polarization free energy of solvation -81.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds