Wall clock time and date at job start Tue Mar 31 2020 22:45:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.08993 * 109.47461 * 2 1
4 4 C 1.53004 * 109.47253 * 239.99726 * 2 1 3
5 5 N 1.46498 * 109.47263 * 185.00169 * 4 2 1
6 6 C 1.46493 * 119.99937 * 270.00151 * 5 4 2
7 7 C 1.36946 * 119.99929 * 90.00107 * 5 4 2
8 8 H 1.07994 * 119.99796 * 20.79594 * 7 5 4
9 9 C 1.38806 * 119.99508 * 200.80064 * 7 5 4
10 10 N 1.31620 * 120.00758 * 15.55012 * 9 7 5
11 11 Si 1.86806 * 119.99552 * 195.55205 * 9 7 5
12 12 H 1.48498 * 109.47223 * 59.99778 * 11 9 7
13 13 H 1.48506 * 109.47023 * 179.97438 * 11 9 7
14 14 H 1.48503 * 109.47132 * 299.99710 * 11 9 7
15 15 N 1.46502 * 109.47089 * 119.99970 * 2 1 3
16 16 C 1.34780 * 120.00028 * 275.00259 * 15 2 1
17 17 O 1.21283 * 119.99830 * 359.97438 * 16 15 2
18 18 C 1.50694 * 120.00239 * 180.02562 * 16 15 2
19 19 H 1.09001 * 109.47255 * 299.99688 * 18 16 15
20 20 C 1.53001 * 109.47315 * 59.99224 * 18 16 15
21 21 N 1.46501 * 109.47225 * 179.97438 * 18 16 15
22 22 C 1.34778 * 119.99823 * 154.99593 * 21 18 16
23 23 O 1.21277 * 119.99966 * 0.02562 * 22 21 18
24 24 C 1.50700 * 119.99762 * 179.97438 * 22 21 18
25 25 N 1.46494 * 109.46986 * 180.02562 * 24 22 21
26 26 C 1.34603 * 126.43868 * 125.00440 * 25 24 22
27 27 N 1.31070 * 106.68047 * 179.97438 * 26 25 24
28 28 N 1.28843 * 107.99244 * 359.97438 * 27 26 25
29 29 N 1.28740 * 109.39225 * 359.73149 * 28 27 26
30 30 H 1.09000 * 109.47284 * 300.00175 * 1 2 3
31 31 H 1.09003 * 109.46805 * 60.00269 * 1 2 3
32 32 H 1.09007 * 109.47319 * 180.02562 * 1 2 3
33 33 H 1.09006 * 109.46826 * 305.00163 * 4 2 1
34 34 H 1.08997 * 109.47223 * 64.99565 * 4 2 1
35 35 H 1.09000 * 109.47513 * 93.89486 * 6 5 4
36 36 H 1.09006 * 109.47029 * 213.89195 * 6 5 4
37 37 H 1.08996 * 109.47278 * 333.89145 * 6 5 4
38 38 H 0.96993 * 120.00306 * 179.97438 * 10 9 7
39 39 H 0.97002 * 120.00270 * 94.99771 * 15 2 1
40 40 H 1.09006 * 109.47014 * 60.00209 * 20 18 16
41 41 H 1.08994 * 109.47238 * 179.97438 * 20 18 16
42 42 H 1.08993 * 109.47642 * 300.00718 * 20 18 16
43 43 H 0.97001 * 119.99714 * 335.00216 * 21 18 16
44 44 H 1.09004 * 109.47399 * 300.00398 * 24 22 21
45 45 H 1.09000 * 109.47071 * 60.00223 * 24 22 21
46 46 H 1.08003 * 126.65794 * 0.03048 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0401 -0.7213 -1.2492
5 7 3.5001 -0.8265 -1.1905
6 6 4.3343 0.2339 -1.7612
7 6 4.0850 -1.9160 -0.6022
8 1 3.5254 -2.8324 -0.4861
9 6 5.3970 -1.8425 -0.1551
10 7 5.9783 -0.6705 -0.0102
11 14 6.3377 -3.4070 0.2411
12 1 6.4199 -4.2564 -0.9741
13 1 7.7083 -3.0590 0.6949
14 1 5.6331 -4.1492 1.3172
15 7 2.0183 -0.6906 1.1962
16 6 2.1470 -0.0183 2.3572
17 8 1.8590 1.1586 2.4115
18 6 2.6499 -0.7284 3.5875
19 1 1.9777 -1.5508 3.8326
20 6 4.0526 -1.2785 3.3214
21 7 2.6995 0.2130 4.7088
22 6 2.6208 -0.2422 5.9749
23 8 2.5093 -1.4313 6.1859
24 6 2.6725 0.7262 7.1284
25 7 2.5693 -0.0111 8.3901
26 6 3.4342 0.0419 9.4201
27 7 2.9701 -0.7650 10.3429
28 7 1.8769 -1.2859 9.9029
29 7 1.6287 -0.8280 8.7256
30 1 -0.3634 0.5139 0.8900
31 1 -0.3633 0.5138 -0.8900
32 1 -0.3634 -1.0277 0.0005
33 1 1.6054 -1.7199 -1.2951
34 1 1.7517 -0.1585 -2.1370
35 1 4.5974 0.9486 -0.9814
36 1 5.2432 -0.2023 -2.1758
37 1 3.7833 0.7443 -2.5510
38 1 6.8950 -0.6192 0.3026
39 1 2.2490 -1.6318 1.1527
40 1 4.7248 -0.4562 3.0763
41 1 4.4164 -1.7918 4.2114
42 1 4.0160 -1.9788 2.4870
43 1 2.7890 1.1640 4.5400
44 1 3.6158 1.2718 7.1029
45 1 1.8437 1.4298 7.0495
46 1 4.3351 0.6349 9.4757
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001483405743.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:45:15
Heat of formation + Delta-G solvation = 79.870290 kcal
Electronic energy + Delta-G solvation = -30401.961518 eV
Core-core repulsion = 26173.100670 eV
Total energy + Delta-G solvation = -4228.860848 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 339.181 amu
Computer time = 0.99 seconds
Orbital eigenvalues (eV)
-44.34911 -40.39284 -39.16205 -36.60110 -35.74278 -34.94422 -34.10286 -32.65465
-32.03625 -30.95258 -29.92625 -28.70383 -26.29905 -25.71715 -24.63961 -24.02650
-23.51992 -21.94563 -20.97239 -20.34023 -19.80683 -18.49930 -18.06074 -17.08110
-16.76498 -16.48130 -16.05663 -15.87094 -15.75347 -15.22393 -14.98256 -14.49471
-14.06846 -13.91918 -13.64867 -13.47445 -13.21183 -12.95153 -12.93938 -12.39578
-12.30478 -12.26251 -12.09758 -11.91310 -11.50550 -11.44289 -11.39253 -11.32873
-11.31890 -10.90244 -10.81048 -10.61100 -10.52982 -10.37115 -10.18000 -10.15824
-9.93545 -9.56429 -9.19077 -8.67025 -8.46606 -6.92260 -5.87040 -3.31047
1.02502 1.55856 2.10377 2.16971 2.70317 3.01697 3.25411 3.33412
3.36240 3.69618 3.87909 3.97532 4.22215 4.35461 4.36710 4.56955
4.98939 5.19140 5.22030 5.27273 5.31126 5.38119 5.46485 5.54544
5.74404 5.79889 5.85500 5.88510 6.04860 6.06315 6.13596 6.28996
6.35298 6.40015 6.62238 6.63404 6.76223 7.06322 7.19976 7.25746
7.57791 7.65770 7.82001 8.07103 8.22744 8.43231 8.66177 9.07450
9.72165 10.21830 11.16640
Molecular weight = 339.18amu
Principal moments of inertia in cm(-1)
A = 0.013698 B = 0.003041 C = 0.002663
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2043.623674 B = 9206.002921 C =10513.289807
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.160 4.160
2 C 0.119 3.881
3 H 0.078 0.922
4 C 0.141 3.859
5 N -0.597 5.597
6 C 0.163 3.837
7 C -0.260 4.260
8 H 0.066 0.934
9 C 0.013 3.987
10 N -0.894 5.894
11 Si 0.889 3.111
12 H -0.285 1.285
13 H -0.291 1.291
14 H -0.281 1.281
15 N -0.677 5.677
16 C 0.517 3.483
17 O -0.562 6.562
18 C 0.129 3.871
19 H 0.109 0.891
20 C -0.154 4.154
21 N -0.698 5.698
22 C 0.503 3.497
23 O -0.513 6.513
24 C 0.096 3.904
25 N -0.299 5.299
26 C 0.160 3.840
27 N -0.308 5.308
28 N -0.080 5.080
29 N -0.062 5.062
30 H 0.051 0.949
31 H 0.060 0.940
32 H 0.052 0.948
33 H 0.049 0.951
34 H 0.053 0.947
35 H 0.027 0.973
36 H 0.044 0.956
37 H -0.003 1.003
38 H 0.252 0.748
39 H 0.406 0.594
40 H 0.071 0.929
41 H 0.059 0.941
42 H 0.088 0.912
43 H 0.412 0.588
44 H 0.146 0.854
45 H 0.138 0.862
46 H 0.236 0.764
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.186 6.577 8.259 11.763
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.219 4.219
2 C 0.011 3.989
3 H 0.096 0.904
4 C 0.013 3.987
5 N -0.319 5.319
6 C 0.019 3.981
7 C -0.389 4.389
8 H 0.084 0.916
9 C -0.187 4.187
10 N -0.538 5.538
11 Si 0.719 3.281
12 H -0.211 1.211
13 H -0.217 1.217
14 H -0.207 1.207
15 N -0.326 5.326
16 C 0.302 3.698
17 O -0.442 6.442
18 C 0.021 3.979
19 H 0.126 0.874
20 C -0.213 4.213
21 N -0.352 5.352
22 C 0.285 3.715
23 O -0.388 6.388
24 C -0.029 4.029
25 N -0.101 5.101
26 C -0.139 4.139
27 N -0.156 5.156
28 N -0.075 5.075
29 N -0.048 5.048
30 H 0.070 0.930
31 H 0.079 0.921
32 H 0.071 0.929
33 H 0.068 0.932
34 H 0.071 0.929
35 H 0.045 0.955
36 H 0.062 0.938
37 H 0.015 0.985
38 H 0.063 0.937
39 H 0.243 0.757
40 H 0.090 0.910
41 H 0.078 0.922
42 H 0.106 0.894
43 H 0.249 0.751
44 H 0.163 0.837
45 H 0.156 0.844
46 H 0.252 0.748
Dipole moment (debyes) X Y Z Total
from point charges -6.190 5.644 8.982 12.282
hybrid contribution 1.624 0.007 -0.433 1.681
sum -4.565 5.651 8.549 11.219
Atomic orbital electron populations
1.22164 0.96754 1.01408 1.01612 1.21876 0.91843 0.98382 0.86788
0.90419 1.21194 0.85968 0.98007 0.93554 1.43890 0.98859 1.22675
1.66507 1.20780 0.93061 0.90465 0.93835 1.19018 0.96317 0.89724
1.33852 0.91649 1.24863 0.98425 0.95922 0.99487 1.70074 1.13176
1.21611 1.48968 0.86608 0.79660 0.83502 0.78378 1.21117 1.21662
1.20715 1.45646 1.64151 1.14519 1.08285 1.20185 0.77590 0.87159
0.84905 1.90613 1.52362 1.15911 1.85347 1.20853 1.00220 0.92056
0.84747 0.87356 1.22086 0.93781 1.02645 1.02742 1.45581 1.73549
1.11954 1.04145 1.20034 0.78105 0.89410 0.83931 1.90856 1.47771
1.15856 1.84288 1.21998 1.08492 0.93686 0.78764 1.48150 1.16523
1.30447 1.14981 1.27749 0.99678 1.01940 0.84503 1.74984 1.06239
1.09392 1.24950 1.78677 1.08896 1.18183 1.01697 1.79026 1.12029
1.03516 1.10262 0.92988 0.92139 0.92906 0.93239 0.92859 0.95451
0.93756 0.98472 0.93723 0.75721 0.90992 0.92230 0.89359 0.75091
0.83658 0.84424 0.74828
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 19.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.19 9.48 37.16 0.35 -1.83 16
2 C 0.12 1.98 2.88 -67.93 -0.20 1.78 16
3 H 0.08 1.50 7.58 -51.93 -0.39 1.11 16
4 C 0.14 2.46 5.36 -4.04 -0.02 2.44 16
5 N -0.60 -12.94 2.82 -181.12 -0.51 -13.45 16
6 C 0.16 3.66 9.02 59.84 0.54 4.20 16
7 C -0.26 -6.02 8.01 -15.06 -0.12 -6.14 16
8 H 0.07 1.48 7.86 -52.49 -0.41 1.07 16
9 C 0.01 0.31 5.04 -17.43 -0.09 0.22 16
10 N -0.89 -22.92 10.74 55.49 0.60 -22.33 16
11 Si 0.89 19.69 29.58 -169.99 -5.03 14.66 16
12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16
13 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16
14 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16
15 N -0.68 -11.42 4.38 -53.81 -0.24 -11.65 16
16 C 0.52 8.68 7.19 -10.99 -0.08 8.60 16
17 O -0.56 -10.46 15.50 5.55 0.09 -10.37 16
18 C 0.13 1.88 2.98 -69.08 -0.21 1.68 16
19 H 0.11 1.59 7.58 -51.93 -0.39 1.19 16
20 C -0.15 -2.48 9.38 37.16 0.35 -2.13 16
21 N -0.70 -8.17 4.95 -54.93 -0.27 -8.45 16
22 C 0.50 5.73 7.81 -10.99 -0.09 5.64 16
23 O -0.51 -8.27 15.38 5.56 0.09 -8.19 16
24 C 0.10 0.61 6.96 -5.20 -0.04 0.58 16
25 N -0.30 -2.99 3.19 -63.74 -0.20 -3.19 16
26 C 0.16 1.37 12.79 -90.39 -1.16 0.21 16
27 N -0.31 -3.99 12.36 29.59 0.37 -3.63 16
28 N -0.08 -1.23 13.43 60.35 0.81 -0.42 16
29 N -0.06 -0.88 12.31 60.35 0.74 -0.14 16
30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16
31 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16
32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16
33 H 0.05 0.82 8.03 -51.93 -0.42 0.41 16
34 H 0.05 0.85 7.87 -51.93 -0.41 0.45 16
35 H 0.03 0.67 7.46 -51.93 -0.39 0.29 16
36 H 0.04 1.08 7.18 -51.93 -0.37 0.71 16
37 H 0.00 -0.07 7.85 -51.93 -0.41 -0.47 16
38 H 0.25 6.48 8.31 -40.82 -0.34 6.14 16
39 H 0.41 6.87 6.82 -40.82 -0.28 6.59 16
40 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16
41 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16
42 H 0.09 1.57 7.56 -51.93 -0.39 1.18 16
43 H 0.41 4.20 7.79 -40.82 -0.32 3.88 16
44 H 0.15 0.24 8.08 -51.93 -0.42 -0.18 16
45 H 0.14 0.52 8.14 -51.93 -0.42 0.10 16
46 H 0.24 0.59 8.06 -52.48 -0.42 0.17 16
LS Contribution 389.74 15.07 5.87 5.87
Total: -1.00 -34.06 389.74 -5.13 -39.19
By element:
Atomic # 1 Polarization: 13.54 SS G_CDS: -6.70 Total: 6.85 kcal
Atomic # 6 Polarization: 15.99 SS G_CDS: -0.75 Total: 15.24 kcal
Atomic # 7 Polarization: -64.55 SS G_CDS: 1.29 Total: -63.26 kcal
Atomic # 8 Polarization: -18.73 SS G_CDS: 0.17 Total: -18.56 kcal
Atomic # 14 Polarization: 19.69 SS G_CDS: -5.03 Total: 14.66 kcal
Total LS contribution 5.87 Total: 5.87 kcal
Total: -34.06 -5.13 -39.19 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001483405743.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 119.065 kcal
(2) G-P(sol) polarization free energy of solvation -34.061 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.004 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.133 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.195 kcal
(6) G-S(sol) free energy of system = (1) + (5) 79.870 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.00 seconds