Wall clock time and date at job start Tue Mar 31 2020 22:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47461 * 2 1 4 4 C 1.53004 * 109.47253 * 239.99726 * 2 1 3 5 5 N 1.46498 * 109.47263 * 185.00169 * 4 2 1 6 6 C 1.46493 * 119.99937 * 270.00151 * 5 4 2 7 7 C 1.36946 * 119.99929 * 90.00107 * 5 4 2 8 8 H 1.07994 * 119.99796 * 20.79594 * 7 5 4 9 9 C 1.38806 * 119.99508 * 200.80064 * 7 5 4 10 10 N 1.31620 * 120.00758 * 15.55012 * 9 7 5 11 11 Si 1.86806 * 119.99552 * 195.55205 * 9 7 5 12 12 H 1.48498 * 109.47223 * 59.99778 * 11 9 7 13 13 H 1.48506 * 109.47023 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47132 * 299.99710 * 11 9 7 15 15 N 1.46502 * 109.47089 * 119.99970 * 2 1 3 16 16 C 1.34780 * 120.00028 * 275.00259 * 15 2 1 17 17 O 1.21283 * 119.99830 * 359.97438 * 16 15 2 18 18 C 1.50694 * 120.00239 * 180.02562 * 16 15 2 19 19 H 1.09001 * 109.47255 * 299.99688 * 18 16 15 20 20 C 1.53001 * 109.47315 * 59.99224 * 18 16 15 21 21 N 1.46501 * 109.47225 * 179.97438 * 18 16 15 22 22 C 1.34778 * 119.99823 * 154.99593 * 21 18 16 23 23 O 1.21277 * 119.99966 * 0.02562 * 22 21 18 24 24 C 1.50700 * 119.99762 * 179.97438 * 22 21 18 25 25 N 1.46494 * 109.46986 * 180.02562 * 24 22 21 26 26 C 1.34603 * 126.43868 * 125.00440 * 25 24 22 27 27 N 1.31070 * 106.68047 * 179.97438 * 26 25 24 28 28 N 1.28843 * 107.99244 * 359.97438 * 27 26 25 29 29 N 1.28740 * 109.39225 * 359.73149 * 28 27 26 30 30 H 1.09000 * 109.47284 * 300.00175 * 1 2 3 31 31 H 1.09003 * 109.46805 * 60.00269 * 1 2 3 32 32 H 1.09007 * 109.47319 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.46826 * 305.00163 * 4 2 1 34 34 H 1.08997 * 109.47223 * 64.99565 * 4 2 1 35 35 H 1.09000 * 109.47513 * 93.89486 * 6 5 4 36 36 H 1.09006 * 109.47029 * 213.89195 * 6 5 4 37 37 H 1.08996 * 109.47278 * 333.89145 * 6 5 4 38 38 H 0.96993 * 120.00306 * 179.97438 * 10 9 7 39 39 H 0.97002 * 120.00270 * 94.99771 * 15 2 1 40 40 H 1.09006 * 109.47014 * 60.00209 * 20 18 16 41 41 H 1.08994 * 109.47238 * 179.97438 * 20 18 16 42 42 H 1.08993 * 109.47642 * 300.00718 * 20 18 16 43 43 H 0.97001 * 119.99714 * 335.00216 * 21 18 16 44 44 H 1.09004 * 109.47399 * 300.00398 * 24 22 21 45 45 H 1.09000 * 109.47071 * 60.00223 * 24 22 21 46 46 H 1.08003 * 126.65794 * 0.03048 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5001 -0.8265 -1.1905 6 6 4.3343 0.2339 -1.7612 7 6 4.0850 -1.9160 -0.6022 8 1 3.5254 -2.8324 -0.4861 9 6 5.3970 -1.8425 -0.1551 10 7 5.9783 -0.6705 -0.0102 11 14 6.3377 -3.4070 0.2411 12 1 6.4199 -4.2564 -0.9741 13 1 7.7083 -3.0590 0.6949 14 1 5.6331 -4.1492 1.3172 15 7 2.0183 -0.6906 1.1962 16 6 2.1470 -0.0183 2.3572 17 8 1.8590 1.1586 2.4115 18 6 2.6499 -0.7284 3.5875 19 1 1.9777 -1.5508 3.8326 20 6 4.0526 -1.2785 3.3214 21 7 2.6995 0.2130 4.7088 22 6 2.6208 -0.2422 5.9749 23 8 2.5093 -1.4313 6.1859 24 6 2.6725 0.7262 7.1284 25 7 2.5693 -0.0111 8.3901 26 6 3.4342 0.0419 9.4201 27 7 2.9701 -0.7650 10.3429 28 7 1.8769 -1.2859 9.9029 29 7 1.6287 -0.8280 8.7256 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.6054 -1.7199 -1.2951 34 1 1.7517 -0.1585 -2.1370 35 1 4.5974 0.9486 -0.9814 36 1 5.2432 -0.2023 -2.1758 37 1 3.7833 0.7443 -2.5510 38 1 6.8950 -0.6192 0.3026 39 1 2.2490 -1.6318 1.1527 40 1 4.7248 -0.4562 3.0763 41 1 4.4164 -1.7918 4.2114 42 1 4.0160 -1.9788 2.4870 43 1 2.7890 1.1640 4.5400 44 1 3.6158 1.2718 7.1029 45 1 1.8437 1.4298 7.0495 46 1 4.3351 0.6349 9.4757 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483405743.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:15 Heat of formation + Delta-G solvation = 79.870290 kcal Electronic energy + Delta-G solvation = -30401.961518 eV Core-core repulsion = 26173.100670 eV Total energy + Delta-G solvation = -4228.860848 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.34911 -40.39284 -39.16205 -36.60110 -35.74278 -34.94422 -34.10286 -32.65465 -32.03625 -30.95258 -29.92625 -28.70383 -26.29905 -25.71715 -24.63961 -24.02650 -23.51992 -21.94563 -20.97239 -20.34023 -19.80683 -18.49930 -18.06074 -17.08110 -16.76498 -16.48130 -16.05663 -15.87094 -15.75347 -15.22393 -14.98256 -14.49471 -14.06846 -13.91918 -13.64867 -13.47445 -13.21183 -12.95153 -12.93938 -12.39578 -12.30478 -12.26251 -12.09758 -11.91310 -11.50550 -11.44289 -11.39253 -11.32873 -11.31890 -10.90244 -10.81048 -10.61100 -10.52982 -10.37115 -10.18000 -10.15824 -9.93545 -9.56429 -9.19077 -8.67025 -8.46606 -6.92260 -5.87040 -3.31047 1.02502 1.55856 2.10377 2.16971 2.70317 3.01697 3.25411 3.33412 3.36240 3.69618 3.87909 3.97532 4.22215 4.35461 4.36710 4.56955 4.98939 5.19140 5.22030 5.27273 5.31126 5.38119 5.46485 5.54544 5.74404 5.79889 5.85500 5.88510 6.04860 6.06315 6.13596 6.28996 6.35298 6.40015 6.62238 6.63404 6.76223 7.06322 7.19976 7.25746 7.57791 7.65770 7.82001 8.07103 8.22744 8.43231 8.66177 9.07450 9.72165 10.21830 11.16640 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.013698 B = 0.003041 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.623674 B = 9206.002921 C =10513.289807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.119 3.881 3 H 0.078 0.922 4 C 0.141 3.859 5 N -0.597 5.597 6 C 0.163 3.837 7 C -0.260 4.260 8 H 0.066 0.934 9 C 0.013 3.987 10 N -0.894 5.894 11 Si 0.889 3.111 12 H -0.285 1.285 13 H -0.291 1.291 14 H -0.281 1.281 15 N -0.677 5.677 16 C 0.517 3.483 17 O -0.562 6.562 18 C 0.129 3.871 19 H 0.109 0.891 20 C -0.154 4.154 21 N -0.698 5.698 22 C 0.503 3.497 23 O -0.513 6.513 24 C 0.096 3.904 25 N -0.299 5.299 26 C 0.160 3.840 27 N -0.308 5.308 28 N -0.080 5.080 29 N -0.062 5.062 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.049 0.951 34 H 0.053 0.947 35 H 0.027 0.973 36 H 0.044 0.956 37 H -0.003 1.003 38 H 0.252 0.748 39 H 0.406 0.594 40 H 0.071 0.929 41 H 0.059 0.941 42 H 0.088 0.912 43 H 0.412 0.588 44 H 0.146 0.854 45 H 0.138 0.862 46 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.186 6.577 8.259 11.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.011 3.989 3 H 0.096 0.904 4 C 0.013 3.987 5 N -0.319 5.319 6 C 0.019 3.981 7 C -0.389 4.389 8 H 0.084 0.916 9 C -0.187 4.187 10 N -0.538 5.538 11 Si 0.719 3.281 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.207 1.207 15 N -0.326 5.326 16 C 0.302 3.698 17 O -0.442 6.442 18 C 0.021 3.979 19 H 0.126 0.874 20 C -0.213 4.213 21 N -0.352 5.352 22 C 0.285 3.715 23 O -0.388 6.388 24 C -0.029 4.029 25 N -0.101 5.101 26 C -0.139 4.139 27 N -0.156 5.156 28 N -0.075 5.075 29 N -0.048 5.048 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.045 0.955 36 H 0.062 0.938 37 H 0.015 0.985 38 H 0.063 0.937 39 H 0.243 0.757 40 H 0.090 0.910 41 H 0.078 0.922 42 H 0.106 0.894 43 H 0.249 0.751 44 H 0.163 0.837 45 H 0.156 0.844 46 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -6.190 5.644 8.982 12.282 hybrid contribution 1.624 0.007 -0.433 1.681 sum -4.565 5.651 8.549 11.219 Atomic orbital electron populations 1.22164 0.96754 1.01408 1.01612 1.21876 0.91843 0.98382 0.86788 0.90419 1.21194 0.85968 0.98007 0.93554 1.43890 0.98859 1.22675 1.66507 1.20780 0.93061 0.90465 0.93835 1.19018 0.96317 0.89724 1.33852 0.91649 1.24863 0.98425 0.95922 0.99487 1.70074 1.13176 1.21611 1.48968 0.86608 0.79660 0.83502 0.78378 1.21117 1.21662 1.20715 1.45646 1.64151 1.14519 1.08285 1.20185 0.77590 0.87159 0.84905 1.90613 1.52362 1.15911 1.85347 1.20853 1.00220 0.92056 0.84747 0.87356 1.22086 0.93781 1.02645 1.02742 1.45581 1.73549 1.11954 1.04145 1.20034 0.78105 0.89410 0.83931 1.90856 1.47771 1.15856 1.84288 1.21998 1.08492 0.93686 0.78764 1.48150 1.16523 1.30447 1.14981 1.27749 0.99678 1.01940 0.84503 1.74984 1.06239 1.09392 1.24950 1.78677 1.08896 1.18183 1.01697 1.79026 1.12029 1.03516 1.10262 0.92988 0.92139 0.92906 0.93239 0.92859 0.95451 0.93756 0.98472 0.93723 0.75721 0.90992 0.92230 0.89359 0.75091 0.83658 0.84424 0.74828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 9.48 37.16 0.35 -1.83 16 2 C 0.12 1.98 2.88 -67.93 -0.20 1.78 16 3 H 0.08 1.50 7.58 -51.93 -0.39 1.11 16 4 C 0.14 2.46 5.36 -4.04 -0.02 2.44 16 5 N -0.60 -12.94 2.82 -181.12 -0.51 -13.45 16 6 C 0.16 3.66 9.02 59.84 0.54 4.20 16 7 C -0.26 -6.02 8.01 -15.06 -0.12 -6.14 16 8 H 0.07 1.48 7.86 -52.49 -0.41 1.07 16 9 C 0.01 0.31 5.04 -17.43 -0.09 0.22 16 10 N -0.89 -22.92 10.74 55.49 0.60 -22.33 16 11 Si 0.89 19.69 29.58 -169.99 -5.03 14.66 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 14 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 15 N -0.68 -11.42 4.38 -53.81 -0.24 -11.65 16 16 C 0.52 8.68 7.19 -10.99 -0.08 8.60 16 17 O -0.56 -10.46 15.50 5.55 0.09 -10.37 16 18 C 0.13 1.88 2.98 -69.08 -0.21 1.68 16 19 H 0.11 1.59 7.58 -51.93 -0.39 1.19 16 20 C -0.15 -2.48 9.38 37.16 0.35 -2.13 16 21 N -0.70 -8.17 4.95 -54.93 -0.27 -8.45 16 22 C 0.50 5.73 7.81 -10.99 -0.09 5.64 16 23 O -0.51 -8.27 15.38 5.56 0.09 -8.19 16 24 C 0.10 0.61 6.96 -5.20 -0.04 0.58 16 25 N -0.30 -2.99 3.19 -63.74 -0.20 -3.19 16 26 C 0.16 1.37 12.79 -90.39 -1.16 0.21 16 27 N -0.31 -3.99 12.36 29.59 0.37 -3.63 16 28 N -0.08 -1.23 13.43 60.35 0.81 -0.42 16 29 N -0.06 -0.88 12.31 60.35 0.74 -0.14 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.82 8.03 -51.93 -0.42 0.41 16 34 H 0.05 0.85 7.87 -51.93 -0.41 0.45 16 35 H 0.03 0.67 7.46 -51.93 -0.39 0.29 16 36 H 0.04 1.08 7.18 -51.93 -0.37 0.71 16 37 H 0.00 -0.07 7.85 -51.93 -0.41 -0.47 16 38 H 0.25 6.48 8.31 -40.82 -0.34 6.14 16 39 H 0.41 6.87 6.82 -40.82 -0.28 6.59 16 40 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.09 1.57 7.56 -51.93 -0.39 1.18 16 43 H 0.41 4.20 7.79 -40.82 -0.32 3.88 16 44 H 0.15 0.24 8.08 -51.93 -0.42 -0.18 16 45 H 0.14 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.24 0.59 8.06 -52.48 -0.42 0.17 16 LS Contribution 389.74 15.07 5.87 5.87 Total: -1.00 -34.06 389.74 -5.13 -39.19 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -6.70 Total: 6.85 kcal Atomic # 6 Polarization: 15.99 SS G_CDS: -0.75 Total: 15.24 kcal Atomic # 7 Polarization: -64.55 SS G_CDS: 1.29 Total: -63.26 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: 0.17 Total: -18.56 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.03 Total: 14.66 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.06 -5.13 -39.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483405743.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.065 kcal (2) G-P(sol) polarization free energy of solvation -34.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds