Wall clock time and date at job start Tue Mar 31 2020 22:45:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.08993 * 109.47461 * 2 1
4 4 C 1.53004 * 109.47253 * 239.99726 * 2 1 3
5 5 N 1.46498 * 109.47263 * 185.00169 * 4 2 1
6 6 C 1.46493 * 119.99937 * 270.00151 * 5 4 2
7 7 C 1.36946 * 119.99929 * 90.00107 * 5 4 2
8 8 H 1.07994 * 119.99796 * 20.79594 * 7 5 4
9 9 C 1.38806 * 119.99508 * 200.80064 * 7 5 4
10 10 N 1.31620 * 120.00758 * 15.55012 * 9 7 5
11 11 Si 1.86806 * 119.99552 * 195.55205 * 9 7 5
12 12 H 1.48498 * 109.47223 * 59.99778 * 11 9 7
13 13 H 1.48506 * 109.47023 * 179.97438 * 11 9 7
14 14 H 1.48503 * 109.47132 * 299.99710 * 11 9 7
15 15 N 1.46502 * 109.47089 * 119.99970 * 2 1 3
16 16 C 1.34780 * 120.00028 * 275.00259 * 15 2 1
17 17 O 1.21283 * 119.99830 * 359.97438 * 16 15 2
18 18 C 1.50694 * 120.00239 * 180.02562 * 16 15 2
19 19 H 1.09001 * 109.47255 * 299.99688 * 18 16 15
20 20 C 1.53001 * 109.47315 * 59.99224 * 18 16 15
21 21 N 1.46501 * 109.47225 * 179.97438 * 18 16 15
22 22 C 1.34778 * 119.99823 * 154.99593 * 21 18 16
23 23 O 1.21277 * 119.99966 * 0.02562 * 22 21 18
24 24 C 1.50700 * 119.99762 * 179.97438 * 22 21 18
25 25 N 1.46494 * 109.46986 * 180.02562 * 24 22 21
26 26 C 1.34603 * 126.43868 * 125.00440 * 25 24 22
27 27 N 1.31070 * 106.68047 * 179.97438 * 26 25 24
28 28 N 1.28843 * 107.99244 * 359.97438 * 27 26 25
29 29 N 1.28740 * 109.39225 * 359.73149 * 28 27 26
30 30 H 1.09000 * 109.47284 * 300.00175 * 1 2 3
31 31 H 1.09003 * 109.46805 * 60.00269 * 1 2 3
32 32 H 1.09007 * 109.47319 * 180.02562 * 1 2 3
33 33 H 1.09006 * 109.46826 * 305.00163 * 4 2 1
34 34 H 1.08997 * 109.47223 * 64.99565 * 4 2 1
35 35 H 1.09000 * 109.47513 * 93.89486 * 6 5 4
36 36 H 1.09006 * 109.47029 * 213.89195 * 6 5 4
37 37 H 1.08996 * 109.47278 * 333.89145 * 6 5 4
38 38 H 0.96993 * 120.00306 * 179.97438 * 10 9 7
39 39 H 0.97002 * 120.00270 * 94.99771 * 15 2 1
40 40 H 1.09006 * 109.47014 * 60.00209 * 20 18 16
41 41 H 1.08994 * 109.47238 * 179.97438 * 20 18 16
42 42 H 1.08993 * 109.47642 * 300.00718 * 20 18 16
43 43 H 0.97001 * 119.99714 * 335.00216 * 21 18 16
44 44 H 1.09004 * 109.47399 * 300.00398 * 24 22 21
45 45 H 1.09000 * 109.47071 * 60.00223 * 24 22 21
46 46 H 1.08003 * 126.65794 * 0.03048 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0401 -0.7213 -1.2492
5 7 3.5001 -0.8265 -1.1905
6 6 4.3343 0.2339 -1.7612
7 6 4.0850 -1.9160 -0.6022
8 1 3.5254 -2.8324 -0.4861
9 6 5.3970 -1.8425 -0.1551
10 7 5.9783 -0.6705 -0.0102
11 14 6.3377 -3.4070 0.2411
12 1 6.4199 -4.2564 -0.9741
13 1 7.7083 -3.0590 0.6949
14 1 5.6331 -4.1492 1.3172
15 7 2.0183 -0.6906 1.1962
16 6 2.1470 -0.0183 2.3572
17 8 1.8590 1.1586 2.4115
18 6 2.6499 -0.7284 3.5875
19 1 1.9777 -1.5508 3.8326
20 6 4.0526 -1.2785 3.3214
21 7 2.6995 0.2130 4.7088
22 6 2.6208 -0.2422 5.9749
23 8 2.5093 -1.4313 6.1859
24 6 2.6725 0.7262 7.1284
25 7 2.5693 -0.0111 8.3901
26 6 3.4342 0.0419 9.4201
27 7 2.9701 -0.7650 10.3429
28 7 1.8769 -1.2859 9.9029
29 7 1.6287 -0.8280 8.7256
30 1 -0.3634 0.5139 0.8900
31 1 -0.3633 0.5138 -0.8900
32 1 -0.3634 -1.0277 0.0005
33 1 1.6054 -1.7199 -1.2951
34 1 1.7517 -0.1585 -2.1370
35 1 4.5974 0.9486 -0.9814
36 1 5.2432 -0.2023 -2.1758
37 1 3.7833 0.7443 -2.5510
38 1 6.8950 -0.6192 0.3026
39 1 2.2490 -1.6318 1.1527
40 1 4.7248 -0.4562 3.0763
41 1 4.4164 -1.7918 4.2114
42 1 4.0160 -1.9788 2.4870
43 1 2.7890 1.1640 4.5400
44 1 3.6158 1.2718 7.1029
45 1 1.8437 1.4298 7.0495
46 1 4.3351 0.6349 9.4757
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001483405743.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:45:14
Heat of formation + Delta-G solvation = 54.033052 kcal
Electronic energy + Delta-G solvation = -30403.081905 eV
Core-core repulsion = 26173.100670 eV
Total energy + Delta-G solvation = -4229.981234 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 339.181 amu
Computer time = 0.95 seconds
Orbital eigenvalues (eV)
-45.17140 -41.50512 -40.36978 -38.08961 -36.63673 -36.08564 -35.63826 -33.55807
-33.37312 -32.42947 -31.13463 -29.60642 -27.99113 -27.32836 -25.85398 -24.85978
-24.44258 -23.44974 -22.15350 -21.53731 -21.15399 -19.51083 -18.78438 -18.61410
-17.91468 -17.55409 -17.11606 -16.95066 -16.74206 -16.63793 -16.28019 -15.75100
-15.55752 -15.15669 -14.95253 -14.68139 -14.47574 -14.41063 -13.87952 -13.81401
-13.53475 -13.37499 -13.23287 -13.15761 -13.07510 -12.83383 -12.67369 -12.63654
-12.52809 -12.22664 -12.14997 -12.12107 -11.96667 -11.90632 -11.64232 -11.50319
-11.09902 -10.84674 -10.52132 -10.34027 -9.83623 -8.72424 -7.73630 -5.17041
0.25733 0.92568 1.25136 1.31229 1.47387 1.53971 1.54693 1.63313
1.84002 2.48696 2.55382 3.21522 3.41483 3.47554 3.53051 3.66912
3.81122 3.97798 4.01534 4.03615 4.07501 4.19501 4.38859 4.47042
4.56806 4.63551 4.70548 4.74142 4.79127 4.88455 4.94409 5.03546
5.13169 5.18762 5.20998 5.25524 5.38443 5.43333 5.70761 5.73965
5.78144 6.28904 6.38484 6.67721 6.97190 7.22378 7.30890 7.57373
7.94989 8.40646 9.29032
Molecular weight = 339.18amu
Principal moments of inertia in cm(-1)
A = 0.013698 B = 0.003041 C = 0.002663
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2043.623674 B = 9206.002921 C =10513.289807
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C 0.124 3.876
3 H 0.049 0.951
4 C 0.140 3.860
5 N -0.609 5.609
6 C 0.178 3.822
7 C -0.248 4.248
8 H 0.074 0.926
9 C -0.026 4.026
10 N -0.921 5.921
11 Si 0.933 3.067
12 H -0.289 1.289
13 H -0.305 1.305
14 H -0.272 1.272
15 N -0.681 5.681
16 C 0.514 3.486
17 O -0.581 6.581
18 C 0.139 3.861
19 H 0.108 0.892
20 C -0.138 4.138
21 N -0.692 5.692
22 C 0.502 3.498
23 O -0.565 6.565
24 C 0.099 3.901
25 N -0.299 5.299
26 C 0.185 3.815
27 N -0.347 5.347
28 N -0.118 5.118
29 N -0.097 5.097
30 H 0.041 0.959
31 H 0.080 0.920
32 H 0.066 0.934
33 H 0.064 0.936
34 H 0.073 0.927
35 H -0.003 1.003
36 H 0.017 0.983
37 H 0.026 0.974
38 H 0.242 0.758
39 H 0.406 0.594
40 H 0.052 0.948
41 H 0.062 0.938
42 H 0.068 0.932
43 H 0.421 0.579
44 H 0.205 0.795
45 H 0.170 0.830
46 H 0.296 0.704
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.773 7.626 8.295 12.661
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C 0.016 3.984
3 H 0.067 0.933
4 C 0.013 3.987
5 N -0.332 5.332
6 C 0.033 3.967
7 C -0.378 4.378
8 H 0.092 0.908
9 C -0.223 4.223
10 N -0.567 5.567
11 Si 0.763 3.237
12 H -0.216 1.216
13 H -0.232 1.232
14 H -0.198 1.198
15 N -0.329 5.329
16 C 0.300 3.700
17 O -0.463 6.463
18 C 0.030 3.970
19 H 0.126 0.874
20 C -0.197 4.197
21 N -0.347 5.347
22 C 0.287 3.713
23 O -0.442 6.442
24 C -0.024 4.024
25 N -0.101 5.101
26 C -0.112 4.112
27 N -0.194 5.194
28 N -0.113 5.113
29 N -0.084 5.084
30 H 0.061 0.939
31 H 0.099 0.901
32 H 0.086 0.914
33 H 0.083 0.917
34 H 0.092 0.908
35 H 0.016 0.984
36 H 0.036 0.964
37 H 0.044 0.956
38 H 0.052 0.948
39 H 0.242 0.758
40 H 0.072 0.928
41 H 0.081 0.919
42 H 0.087 0.913
43 H 0.260 0.740
44 H 0.222 0.778
45 H 0.188 0.812
46 H 0.311 0.689
Dipole moment (debyes) X Y Z Total
from point charges -6.819 6.706 9.004 13.136
hybrid contribution 1.800 -0.262 -0.542 1.898
sum -5.018 6.444 8.463 11.761
Atomic orbital electron populations
1.22043 0.93957 1.02532 1.02167 1.21734 0.93880 0.96454 0.86302
0.93296 1.21376 0.83349 0.99311 0.94633 1.44081 1.00725 1.22077
1.66270 1.20497 0.92731 0.90004 0.93517 1.19272 0.96143 0.90431
1.31938 0.90783 1.25275 0.99331 0.97175 1.00486 1.70211 1.12708
1.22854 1.50906 0.85898 0.78184 0.81576 0.78043 1.21605 1.23177
1.19784 1.45728 1.64100 1.14497 1.08570 1.20496 0.77169 0.86967
0.85415 1.90595 1.53236 1.16681 1.85743 1.20573 0.98955 0.92511
0.84928 0.87387 1.21885 0.94358 1.01443 1.02022 1.45500 1.73469
1.11900 1.03792 1.20877 0.76248 0.89597 0.84573 1.90847 1.49965
1.18447 1.84973 1.22468 1.13012 0.91940 0.75001 1.48386 1.15823
1.29770 1.16118 1.28810 0.99806 1.00006 0.82626 1.74881 1.06394
1.11157 1.26972 1.78639 1.10415 1.19672 1.02530 1.78937 1.14033
1.05113 1.10309 0.93949 0.90074 0.91449 0.91743 0.90850 0.98435
0.96399 0.95576 0.94804 0.75769 0.92842 0.91857 0.91285 0.73964
0.77836 0.81240 0.68940
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.67 9.48 71.98 0.68 -2.99 16
2 C 0.12 3.94 2.88 44.99 0.13 4.07 16
3 H 0.05 1.86 7.58 -2.39 -0.02 1.84 16
4 C 0.14 4.57 5.36 86.38 0.46 5.03 16
5 N -0.61 -25.80 2.82 -726.95 -2.05 -27.85 16
6 C 0.18 7.94 9.02 127.77 1.15 9.09 16
7 C -0.25 -11.30 8.01 84.03 0.67 -10.63 16
8 H 0.07 3.23 7.86 -2.91 -0.02 3.21 16
9 C -0.03 -1.27 5.04 84.86 0.43 -0.84 16
10 N -0.92 -48.17 10.74 21.65 0.23 -47.94 16
11 Si 0.93 40.66 29.58 68.60 2.03 42.69 16
12 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16
13 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16
14 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16
15 N -0.68 -22.47 4.38 -442.53 -1.94 -24.41 16
16 C 0.51 17.01 7.19 87.65 0.63 17.64 16
17 O -0.58 -21.23 15.50 -3.04 -0.05 -21.28 16
18 C 0.14 4.00 2.98 44.24 0.13 4.13 16
19 H 0.11 3.15 7.58 -2.39 -0.02 3.13 16
20 C -0.14 -4.47 9.38 71.98 0.68 -3.79 16
21 N -0.69 -15.13 4.95 -446.10 -2.21 -17.34 16
22 C 0.50 10.46 7.81 87.66 0.68 11.15 16
23 O -0.56 -17.88 15.38 -3.02 -0.05 -17.93 16
24 C 0.10 0.87 6.96 85.63 0.60 1.47 16
25 N -0.30 -5.20 3.19 -355.56 -1.13 -6.33 16
26 C 0.19 2.57 12.79 180.27 2.31 4.87 16
27 N -0.35 -8.62 12.36 -60.29 -0.74 -9.37 16
28 N -0.12 -3.65 13.43 37.01 0.50 -3.15 16
29 N -0.10 -2.72 12.31 37.02 0.46 -2.26 16
30 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16
31 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16
32 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16
33 H 0.06 1.94 8.03 -2.38 -0.02 1.93 16
34 H 0.07 2.12 7.87 -2.39 -0.02 2.10 16
35 H 0.00 -0.13 7.46 -2.39 -0.02 -0.15 16
36 H 0.02 0.86 7.18 -2.38 -0.02 0.84 16
37 H 0.03 0.99 7.85 -2.39 -0.02 0.97 16
38 H 0.24 12.80 8.31 -92.71 -0.77 12.03 16
39 H 0.41 13.43 6.82 -92.71 -0.63 12.80 16
40 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16
41 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16
42 H 0.07 2.48 7.56 -2.39 -0.02 2.46 16
43 H 0.42 7.71 7.79 -92.71 -0.72 6.99 16
44 H 0.20 -0.59 8.08 -2.38 -0.02 -0.61 16
45 H 0.17 0.53 8.14 -2.39 -0.02 0.51 16
46 H 0.30 -0.20 8.06 -2.91 -0.02 -0.23 16
Total: -1.00 -79.21 389.74 3.27 -75.94
By element:
Atomic # 1 Polarization: 20.34 SS G_CDS: -0.33 Total: 20.01 kcal
Atomic # 6 Polarization: 30.66 SS G_CDS: 8.55 Total: 39.21 kcal
Atomic # 7 Polarization: -131.76 SS G_CDS: -6.89 Total: -138.65 kcal
Atomic # 8 Polarization: -39.12 SS G_CDS: -0.09 Total: -39.21 kcal
Atomic # 14 Polarization: 40.66 SS G_CDS: 2.03 Total: 42.69 kcal
Total: -79.21 3.27 -75.94 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001483405743.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 129.975 kcal
(2) G-P(sol) polarization free energy of solvation -79.211 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.764 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.269 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.942 kcal
(6) G-S(sol) free energy of system = (1) + (5) 54.033 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.95 seconds