Wall clock time and date at job start Tue Mar 31 2020 22:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47461 * 2 1 4 4 C 1.53004 * 109.47253 * 239.99726 * 2 1 3 5 5 N 1.46498 * 109.47263 * 185.00169 * 4 2 1 6 6 C 1.46493 * 119.99937 * 270.00151 * 5 4 2 7 7 C 1.36946 * 119.99929 * 90.00107 * 5 4 2 8 8 H 1.07994 * 119.99796 * 20.79594 * 7 5 4 9 9 C 1.38806 * 119.99508 * 200.80064 * 7 5 4 10 10 N 1.31620 * 120.00758 * 15.55012 * 9 7 5 11 11 Si 1.86806 * 119.99552 * 195.55205 * 9 7 5 12 12 H 1.48498 * 109.47223 * 59.99778 * 11 9 7 13 13 H 1.48506 * 109.47023 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47132 * 299.99710 * 11 9 7 15 15 N 1.46502 * 109.47089 * 119.99970 * 2 1 3 16 16 C 1.34780 * 120.00028 * 275.00259 * 15 2 1 17 17 O 1.21283 * 119.99830 * 359.97438 * 16 15 2 18 18 C 1.50694 * 120.00239 * 180.02562 * 16 15 2 19 19 H 1.09001 * 109.47255 * 299.99688 * 18 16 15 20 20 C 1.53001 * 109.47315 * 59.99224 * 18 16 15 21 21 N 1.46501 * 109.47225 * 179.97438 * 18 16 15 22 22 C 1.34778 * 119.99823 * 154.99593 * 21 18 16 23 23 O 1.21277 * 119.99966 * 0.02562 * 22 21 18 24 24 C 1.50700 * 119.99762 * 179.97438 * 22 21 18 25 25 N 1.46494 * 109.46986 * 180.02562 * 24 22 21 26 26 C 1.34603 * 126.43868 * 125.00440 * 25 24 22 27 27 N 1.31070 * 106.68047 * 179.97438 * 26 25 24 28 28 N 1.28843 * 107.99244 * 359.97438 * 27 26 25 29 29 N 1.28740 * 109.39225 * 359.73149 * 28 27 26 30 30 H 1.09000 * 109.47284 * 300.00175 * 1 2 3 31 31 H 1.09003 * 109.46805 * 60.00269 * 1 2 3 32 32 H 1.09007 * 109.47319 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.46826 * 305.00163 * 4 2 1 34 34 H 1.08997 * 109.47223 * 64.99565 * 4 2 1 35 35 H 1.09000 * 109.47513 * 93.89486 * 6 5 4 36 36 H 1.09006 * 109.47029 * 213.89195 * 6 5 4 37 37 H 1.08996 * 109.47278 * 333.89145 * 6 5 4 38 38 H 0.96993 * 120.00306 * 179.97438 * 10 9 7 39 39 H 0.97002 * 120.00270 * 94.99771 * 15 2 1 40 40 H 1.09006 * 109.47014 * 60.00209 * 20 18 16 41 41 H 1.08994 * 109.47238 * 179.97438 * 20 18 16 42 42 H 1.08993 * 109.47642 * 300.00718 * 20 18 16 43 43 H 0.97001 * 119.99714 * 335.00216 * 21 18 16 44 44 H 1.09004 * 109.47399 * 300.00398 * 24 22 21 45 45 H 1.09000 * 109.47071 * 60.00223 * 24 22 21 46 46 H 1.08003 * 126.65794 * 0.03048 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5001 -0.8265 -1.1905 6 6 4.3343 0.2339 -1.7612 7 6 4.0850 -1.9160 -0.6022 8 1 3.5254 -2.8324 -0.4861 9 6 5.3970 -1.8425 -0.1551 10 7 5.9783 -0.6705 -0.0102 11 14 6.3377 -3.4070 0.2411 12 1 6.4199 -4.2564 -0.9741 13 1 7.7083 -3.0590 0.6949 14 1 5.6331 -4.1492 1.3172 15 7 2.0183 -0.6906 1.1962 16 6 2.1470 -0.0183 2.3572 17 8 1.8590 1.1586 2.4115 18 6 2.6499 -0.7284 3.5875 19 1 1.9777 -1.5508 3.8326 20 6 4.0526 -1.2785 3.3214 21 7 2.6995 0.2130 4.7088 22 6 2.6208 -0.2422 5.9749 23 8 2.5093 -1.4313 6.1859 24 6 2.6725 0.7262 7.1284 25 7 2.5693 -0.0111 8.3901 26 6 3.4342 0.0419 9.4201 27 7 2.9701 -0.7650 10.3429 28 7 1.8769 -1.2859 9.9029 29 7 1.6287 -0.8280 8.7256 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.6054 -1.7199 -1.2951 34 1 1.7517 -0.1585 -2.1370 35 1 4.5974 0.9486 -0.9814 36 1 5.2432 -0.2023 -2.1758 37 1 3.7833 0.7443 -2.5510 38 1 6.8950 -0.6192 0.3026 39 1 2.2490 -1.6318 1.1527 40 1 4.7248 -0.4562 3.0763 41 1 4.4164 -1.7918 4.2114 42 1 4.0160 -1.9788 2.4870 43 1 2.7890 1.1640 4.5400 44 1 3.6158 1.2718 7.1029 45 1 1.8437 1.4298 7.0495 46 1 4.3351 0.6349 9.4757 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483405743.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:14 Heat of formation + Delta-G solvation = 54.033052 kcal Electronic energy + Delta-G solvation = -30403.081905 eV Core-core repulsion = 26173.100670 eV Total energy + Delta-G solvation = -4229.981234 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -45.17140 -41.50512 -40.36978 -38.08961 -36.63673 -36.08564 -35.63826 -33.55807 -33.37312 -32.42947 -31.13463 -29.60642 -27.99113 -27.32836 -25.85398 -24.85978 -24.44258 -23.44974 -22.15350 -21.53731 -21.15399 -19.51083 -18.78438 -18.61410 -17.91468 -17.55409 -17.11606 -16.95066 -16.74206 -16.63793 -16.28019 -15.75100 -15.55752 -15.15669 -14.95253 -14.68139 -14.47574 -14.41063 -13.87952 -13.81401 -13.53475 -13.37499 -13.23287 -13.15761 -13.07510 -12.83383 -12.67369 -12.63654 -12.52809 -12.22664 -12.14997 -12.12107 -11.96667 -11.90632 -11.64232 -11.50319 -11.09902 -10.84674 -10.52132 -10.34027 -9.83623 -8.72424 -7.73630 -5.17041 0.25733 0.92568 1.25136 1.31229 1.47387 1.53971 1.54693 1.63313 1.84002 2.48696 2.55382 3.21522 3.41483 3.47554 3.53051 3.66912 3.81122 3.97798 4.01534 4.03615 4.07501 4.19501 4.38859 4.47042 4.56806 4.63551 4.70548 4.74142 4.79127 4.88455 4.94409 5.03546 5.13169 5.18762 5.20998 5.25524 5.38443 5.43333 5.70761 5.73965 5.78144 6.28904 6.38484 6.67721 6.97190 7.22378 7.30890 7.57373 7.94989 8.40646 9.29032 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.013698 B = 0.003041 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.623674 B = 9206.002921 C =10513.289807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.124 3.876 3 H 0.049 0.951 4 C 0.140 3.860 5 N -0.609 5.609 6 C 0.178 3.822 7 C -0.248 4.248 8 H 0.074 0.926 9 C -0.026 4.026 10 N -0.921 5.921 11 Si 0.933 3.067 12 H -0.289 1.289 13 H -0.305 1.305 14 H -0.272 1.272 15 N -0.681 5.681 16 C 0.514 3.486 17 O -0.581 6.581 18 C 0.139 3.861 19 H 0.108 0.892 20 C -0.138 4.138 21 N -0.692 5.692 22 C 0.502 3.498 23 O -0.565 6.565 24 C 0.099 3.901 25 N -0.299 5.299 26 C 0.185 3.815 27 N -0.347 5.347 28 N -0.118 5.118 29 N -0.097 5.097 30 H 0.041 0.959 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.073 0.927 35 H -0.003 1.003 36 H 0.017 0.983 37 H 0.026 0.974 38 H 0.242 0.758 39 H 0.406 0.594 40 H 0.052 0.948 41 H 0.062 0.938 42 H 0.068 0.932 43 H 0.421 0.579 44 H 0.205 0.795 45 H 0.170 0.830 46 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.773 7.626 8.295 12.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.016 3.984 3 H 0.067 0.933 4 C 0.013 3.987 5 N -0.332 5.332 6 C 0.033 3.967 7 C -0.378 4.378 8 H 0.092 0.908 9 C -0.223 4.223 10 N -0.567 5.567 11 Si 0.763 3.237 12 H -0.216 1.216 13 H -0.232 1.232 14 H -0.198 1.198 15 N -0.329 5.329 16 C 0.300 3.700 17 O -0.463 6.463 18 C 0.030 3.970 19 H 0.126 0.874 20 C -0.197 4.197 21 N -0.347 5.347 22 C 0.287 3.713 23 O -0.442 6.442 24 C -0.024 4.024 25 N -0.101 5.101 26 C -0.112 4.112 27 N -0.194 5.194 28 N -0.113 5.113 29 N -0.084 5.084 30 H 0.061 0.939 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.016 0.984 36 H 0.036 0.964 37 H 0.044 0.956 38 H 0.052 0.948 39 H 0.242 0.758 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.260 0.740 44 H 0.222 0.778 45 H 0.188 0.812 46 H 0.311 0.689 Dipole moment (debyes) X Y Z Total from point charges -6.819 6.706 9.004 13.136 hybrid contribution 1.800 -0.262 -0.542 1.898 sum -5.018 6.444 8.463 11.761 Atomic orbital electron populations 1.22043 0.93957 1.02532 1.02167 1.21734 0.93880 0.96454 0.86302 0.93296 1.21376 0.83349 0.99311 0.94633 1.44081 1.00725 1.22077 1.66270 1.20497 0.92731 0.90004 0.93517 1.19272 0.96143 0.90431 1.31938 0.90783 1.25275 0.99331 0.97175 1.00486 1.70211 1.12708 1.22854 1.50906 0.85898 0.78184 0.81576 0.78043 1.21605 1.23177 1.19784 1.45728 1.64100 1.14497 1.08570 1.20496 0.77169 0.86967 0.85415 1.90595 1.53236 1.16681 1.85743 1.20573 0.98955 0.92511 0.84928 0.87387 1.21885 0.94358 1.01443 1.02022 1.45500 1.73469 1.11900 1.03792 1.20877 0.76248 0.89597 0.84573 1.90847 1.49965 1.18447 1.84973 1.22468 1.13012 0.91940 0.75001 1.48386 1.15823 1.29770 1.16118 1.28810 0.99806 1.00006 0.82626 1.74881 1.06394 1.11157 1.26972 1.78639 1.10415 1.19672 1.02530 1.78937 1.14033 1.05113 1.10309 0.93949 0.90074 0.91449 0.91743 0.90850 0.98435 0.96399 0.95576 0.94804 0.75769 0.92842 0.91857 0.91285 0.73964 0.77836 0.81240 0.68940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.48 71.98 0.68 -2.99 16 2 C 0.12 3.94 2.88 44.99 0.13 4.07 16 3 H 0.05 1.86 7.58 -2.39 -0.02 1.84 16 4 C 0.14 4.57 5.36 86.38 0.46 5.03 16 5 N -0.61 -25.80 2.82 -726.95 -2.05 -27.85 16 6 C 0.18 7.94 9.02 127.77 1.15 9.09 16 7 C -0.25 -11.30 8.01 84.03 0.67 -10.63 16 8 H 0.07 3.23 7.86 -2.91 -0.02 3.21 16 9 C -0.03 -1.27 5.04 84.86 0.43 -0.84 16 10 N -0.92 -48.17 10.74 21.65 0.23 -47.94 16 11 Si 0.93 40.66 29.58 68.60 2.03 42.69 16 12 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 13 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16 14 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 15 N -0.68 -22.47 4.38 -442.53 -1.94 -24.41 16 16 C 0.51 17.01 7.19 87.65 0.63 17.64 16 17 O -0.58 -21.23 15.50 -3.04 -0.05 -21.28 16 18 C 0.14 4.00 2.98 44.24 0.13 4.13 16 19 H 0.11 3.15 7.58 -2.39 -0.02 3.13 16 20 C -0.14 -4.47 9.38 71.98 0.68 -3.79 16 21 N -0.69 -15.13 4.95 -446.10 -2.21 -17.34 16 22 C 0.50 10.46 7.81 87.66 0.68 11.15 16 23 O -0.56 -17.88 15.38 -3.02 -0.05 -17.93 16 24 C 0.10 0.87 6.96 85.63 0.60 1.47 16 25 N -0.30 -5.20 3.19 -355.56 -1.13 -6.33 16 26 C 0.19 2.57 12.79 180.27 2.31 4.87 16 27 N -0.35 -8.62 12.36 -60.29 -0.74 -9.37 16 28 N -0.12 -3.65 13.43 37.01 0.50 -3.15 16 29 N -0.10 -2.72 12.31 37.02 0.46 -2.26 16 30 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 33 H 0.06 1.94 8.03 -2.38 -0.02 1.93 16 34 H 0.07 2.12 7.87 -2.39 -0.02 2.10 16 35 H 0.00 -0.13 7.46 -2.39 -0.02 -0.15 16 36 H 0.02 0.86 7.18 -2.38 -0.02 0.84 16 37 H 0.03 0.99 7.85 -2.39 -0.02 0.97 16 38 H 0.24 12.80 8.31 -92.71 -0.77 12.03 16 39 H 0.41 13.43 6.82 -92.71 -0.63 12.80 16 40 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 41 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.07 2.48 7.56 -2.39 -0.02 2.46 16 43 H 0.42 7.71 7.79 -92.71 -0.72 6.99 16 44 H 0.20 -0.59 8.08 -2.38 -0.02 -0.61 16 45 H 0.17 0.53 8.14 -2.39 -0.02 0.51 16 46 H 0.30 -0.20 8.06 -2.91 -0.02 -0.23 16 Total: -1.00 -79.21 389.74 3.27 -75.94 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: -0.33 Total: 20.01 kcal Atomic # 6 Polarization: 30.66 SS G_CDS: 8.55 Total: 39.21 kcal Atomic # 7 Polarization: -131.76 SS G_CDS: -6.89 Total: -138.65 kcal Atomic # 8 Polarization: -39.12 SS G_CDS: -0.09 Total: -39.21 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 2.03 Total: 42.69 kcal Total: -79.21 3.27 -75.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483405743.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.975 kcal (2) G-P(sol) polarization free energy of solvation -79.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds