Wall clock time and date at job start Tue Mar 31 2020 22:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47051 * 2 1 4 4 C 1.53001 * 109.47043 * 120.00446 * 2 1 3 5 5 C 1.53002 * 109.46921 * 184.99526 * 4 2 1 6 6 C 1.52992 * 109.47039 * 180.02562 * 5 4 2 7 7 N 1.46499 * 109.47116 * 180.02562 * 6 5 4 8 8 C 1.36938 * 120.00119 * 179.97438 * 7 6 5 9 9 H 1.08007 * 119.99804 * 0.02562 * 8 7 6 10 10 C 1.38813 * 120.00117 * 179.97438 * 8 7 6 11 11 N 1.31616 * 120.00013 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99949 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47211 * 0.02562 * 12 10 8 14 14 H 1.48497 * 109.47051 * 120.00617 * 12 10 8 15 15 H 1.48506 * 109.47170 * 240.00421 * 12 10 8 16 16 N 1.46504 * 109.46412 * 240.00385 * 2 1 3 17 17 C 1.34774 * 120.00116 * 85.00526 * 16 2 1 18 18 O 1.21690 * 119.99840 * 359.97438 * 17 16 2 19 19 C 1.46680 * 120.00083 * 179.97438 * 17 16 2 20 20 S 1.76214 * 126.13005 * 353.83572 * 19 17 16 21 21 C 1.70954 * 90.31246 * 179.97438 * 20 19 17 22 22 N 1.29429 * 110.39460 * 0.34685 * 21 20 19 23 23 C 1.30947 * 117.35951 * 359.72550 * 22 21 20 24 24 C 1.50695 * 122.90164 * 179.97438 * 23 22 21 25 25 C 1.53002 * 109.47417 * 242.94245 * 24 23 22 26 26 C 1.53006 * 109.47319 * 2.94352 * 24 23 22 27 27 C 1.53001 * 109.47072 * 122.94180 * 24 23 22 28 28 H 1.08997 * 109.47117 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46646 * 299.99623 * 1 2 3 30 30 H 1.09001 * 109.47101 * 59.99477 * 1 2 3 31 31 H 1.08994 * 109.47098 * 304.99801 * 4 2 1 32 32 H 1.09001 * 109.46711 * 64.99611 * 4 2 1 33 33 H 1.08998 * 109.46832 * 300.00424 * 5 4 2 34 34 H 1.08999 * 109.46826 * 59.99937 * 5 4 2 35 35 H 1.09000 * 109.47394 * 300.00383 * 6 5 4 36 36 H 1.08999 * 109.47418 * 60.00232 * 6 5 4 37 37 H 0.96998 * 120.00452 * 359.97438 * 7 6 5 38 38 H 0.97002 * 119.99828 * 179.97438 * 11 10 8 39 39 H 0.97000 * 119.99690 * 264.99729 * 16 2 1 40 40 H 1.07999 * 124.80339 * 180.02562 * 21 20 19 41 41 H 1.09001 * 109.47137 * 76.67958 * 25 24 23 42 42 H 1.08997 * 109.47433 * 196.68678 * 25 24 23 43 43 H 1.09006 * 109.46537 * 316.68450 * 25 24 23 44 44 H 1.08998 * 109.46986 * 59.99701 * 26 24 23 45 45 H 1.08998 * 109.47325 * 180.02562 * 26 24 23 46 46 H 1.08999 * 109.46492 * 300.00122 * 26 24 23 47 47 H 1.08996 * 109.47420 * 41.04617 * 27 24 23 48 48 H 1.08999 * 109.47244 * 161.04789 * 27 24 23 49 49 H 1.09003 * 109.47208 * 281.04510 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5649 -0.6135 1.3136 6 6 4.0749 -1.3353 2.5623 7 7 5.5349 -1.2315 2.6243 8 6 6.2187 -1.8057 3.6625 9 1 5.6817 -2.3355 4.4355 10 6 7.6022 -1.7078 3.7210 11 7 8.2566 -1.0627 2.7788 12 14 8.5349 -2.4906 5.1376 13 1 7.5745 -3.1512 6.0576 14 1 9.4855 -3.5002 4.6065 15 1 9.2862 -1.4428 5.8746 16 7 2.0182 -0.6906 -1.1963 17 6 2.1470 -0.0182 -2.3572 18 8 1.8573 1.1625 -2.4118 19 6 2.6363 -0.7094 -3.5548 20 16 3.2428 -2.3624 -3.6254 21 6 3.5218 -2.1982 -5.3040 22 7 3.1857 -1.0139 -5.7034 23 6 2.7095 -0.1885 -4.8053 24 6 2.2805 1.2186 -5.1324 25 6 3.1611 2.2106 -4.3699 26 6 2.4253 1.4594 -6.6364 27 6 0.8193 1.4144 -4.7230 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.6054 -0.2619 2.1369 32 1 1.7516 -1.7716 1.2054 33 1 3.9994 -1.0729 0.4258 34 1 3.8533 0.4368 1.3572 35 1 3.6404 -0.8763 3.4504 36 1 3.7866 -2.3856 2.5182 37 1 6.0173 -0.7561 1.9300 38 1 9.2233 -0.9940 2.8198 39 1 2.2489 -1.6317 -1.1528 40 1 3.9265 -2.9715 -5.9401 41 1 4.1327 2.2839 -4.8585 42 1 2.6830 3.1901 -4.3630 43 1 3.2949 1.8643 -3.3451 44 1 1.7979 0.7526 -7.1796 45 1 2.1154 2.4772 -6.8729 46 1 3.4662 1.3198 -6.9280 47 1 0.6434 0.9314 -3.7619 48 1 0.6053 2.4799 -4.6387 49 1 0.1683 0.9716 -5.4767 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485743409.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:34 Heat of formation + Delta-G solvation = 10.827355 kcal Electronic energy + Delta-G solvation = -27648.903136 eV Core-core repulsion = 23931.048825 eV Total energy + Delta-G solvation = -3717.854311 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.09212 -39.49284 -37.02370 -35.96354 -34.83840 -32.74493 -31.54081 -30.14681 -29.33023 -27.43648 -27.22824 -26.04481 -25.61088 -23.31054 -22.46531 -21.43552 -20.87916 -20.74534 -19.30293 -17.95452 -17.05767 -16.95607 -16.47525 -15.70388 -15.32548 -14.92943 -14.78924 -14.68810 -14.43594 -14.27544 -13.94096 -13.62730 -13.53570 -13.37642 -13.02309 -12.81827 -12.40421 -12.26944 -12.19046 -12.14255 -11.94809 -11.54771 -11.27686 -11.16549 -11.09355 -10.98499 -10.97177 -10.87213 -10.81185 -10.46862 -10.43080 -10.03662 -9.99423 -9.78278 -9.76285 -9.69511 -9.17849 -9.03765 -8.87633 -6.91978 -5.76509 -3.05296 0.00093 0.94037 1.31221 2.23376 2.94340 2.97449 3.42685 3.48035 3.50561 3.82627 4.47185 4.55493 4.66590 4.68585 4.81713 4.97734 4.99465 5.09605 5.13250 5.17668 5.38327 5.49911 5.56981 5.58436 5.60567 5.68686 5.71347 5.73537 5.82249 5.88916 5.90969 5.99414 6.01847 6.02566 6.10216 6.16833 6.19756 6.32033 6.33625 6.38783 6.39972 6.55323 6.84526 6.87952 7.23295 7.38609 7.69873 7.98208 8.42438 9.53336 10.12249 10.46452 11.46484 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013171 B = 0.002603 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.451197 B =10754.071289 C =11606.371383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.143 3.857 3 H 0.093 0.907 4 C -0.124 4.124 5 C -0.126 4.126 6 C 0.153 3.847 7 N -0.735 5.735 8 C -0.239 4.239 9 H 0.070 0.930 10 C -0.015 4.015 11 N -0.933 5.933 12 Si 0.907 3.093 13 H -0.280 1.280 14 H -0.291 1.291 15 H -0.291 1.291 16 N -0.715 5.715 17 C 0.592 3.408 18 O -0.504 6.504 19 C -0.294 4.294 20 S 0.167 5.833 21 C 0.034 3.966 22 N -0.470 5.470 23 C 0.157 3.843 24 C 0.010 3.990 25 C -0.142 4.142 26 C -0.129 4.129 27 C -0.142 4.142 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.017 0.983 36 H 0.016 0.984 37 H 0.383 0.617 38 H 0.254 0.746 39 H 0.398 0.602 40 H 0.205 0.795 41 H 0.044 0.956 42 H 0.060 0.940 43 H 0.085 0.915 44 H 0.055 0.945 45 H 0.055 0.945 46 H 0.058 0.942 47 H 0.081 0.919 48 H 0.061 0.939 49 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.545 -0.035 -17.826 25.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.039 3.961 3 H 0.111 0.889 4 C -0.162 4.162 5 C -0.164 4.164 6 C 0.026 3.974 7 N -0.379 5.379 8 C -0.370 4.370 9 H 0.088 0.912 10 C -0.211 4.211 11 N -0.582 5.582 12 Si 0.738 3.262 13 H -0.206 1.206 14 H -0.219 1.219 15 H -0.218 1.218 16 N -0.366 5.366 17 C 0.378 3.622 18 O -0.383 6.383 19 C -0.418 4.418 20 S 0.423 5.577 21 C -0.261 4.261 22 N -0.183 5.183 23 C 0.019 3.981 24 C 0.007 3.993 25 C -0.200 4.200 26 C -0.186 4.186 27 C -0.199 4.199 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.035 0.965 36 H 0.034 0.966 37 H 0.217 0.783 38 H 0.064 0.936 39 H 0.232 0.768 40 H 0.222 0.778 41 H 0.063 0.937 42 H 0.080 0.920 43 H 0.104 0.896 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.077 0.923 47 H 0.100 0.900 48 H 0.080 0.920 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -17.471 -0.059 -17.530 24.749 hybrid contribution 0.837 -0.211 0.226 0.892 sum -16.634 -0.270 -17.304 24.004 Atomic orbital electron populations 1.22179 0.95209 1.02089 1.02577 1.21111 0.93727 0.97870 0.83402 0.88888 1.21867 0.96961 1.00811 0.96580 1.21738 0.93574 1.01538 0.99545 1.20640 0.86220 0.96417 0.94167 1.42390 1.00198 1.66221 1.29067 1.19283 0.89444 1.27012 1.01275 0.91169 1.24756 0.96465 1.01254 0.98658 1.69674 1.07134 1.47011 1.34383 0.86119 0.79902 0.78506 0.81689 1.20562 1.21867 1.21843 1.46032 1.67136 1.13876 1.09527 1.16599 0.77887 0.86204 0.81541 1.90790 1.49382 1.14332 1.83811 1.25503 1.17510 0.99174 0.99651 1.84115 1.55230 1.09628 1.08757 1.28750 1.02053 0.98136 0.97209 1.66097 1.14046 1.02029 1.36082 1.20752 0.94095 0.97069 0.86221 1.19190 0.96810 0.86879 0.96437 1.22118 0.97721 0.97931 1.02181 1.21768 1.02305 1.00909 0.93652 1.22142 0.92766 1.02564 1.02431 0.92531 0.91351 0.92187 0.90026 0.91405 0.92185 0.91851 0.96471 0.96583 0.78341 0.93570 0.76779 0.77798 0.93738 0.92049 0.89649 0.92591 0.92613 0.92300 0.90032 0.91980 0.93955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 9.48 37.16 0.35 -1.12 16 2 C 0.14 1.53 2.57 -67.93 -0.17 1.35 16 3 H 0.09 1.14 7.58 -51.93 -0.39 0.75 16 4 C -0.12 -1.39 4.75 -26.73 -0.13 -1.52 16 5 C -0.13 -1.94 5.22 -26.73 -0.14 -2.08 16 6 C 0.15 3.03 6.26 -4.05 -0.03 3.00 16 7 N -0.73 -18.87 5.60 -59.91 -0.34 -19.21 16 8 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 9 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 10 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 11 N -0.93 -28.54 13.06 55.49 0.72 -27.82 16 12 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 15 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 16 N -0.71 -7.72 4.52 -55.11 -0.25 -7.97 16 17 C 0.59 7.25 6.60 -12.85 -0.08 7.17 16 18 O -0.50 -6.95 9.66 5.20 0.05 -6.90 16 19 C -0.29 -3.40 6.06 -37.10 -0.22 -3.63 16 20 S 0.17 1.48 22.37 -107.50 -2.41 -0.92 16 21 C 0.03 0.29 12.22 51.75 0.63 0.92 16 22 N -0.47 -5.28 9.53 -11.53 -0.11 -5.39 16 23 C 0.16 1.88 5.45 -83.89 -0.46 1.43 16 24 C 0.01 0.11 0.75 -155.66 -0.12 -0.01 16 25 C -0.14 -1.73 8.01 37.16 0.30 -1.43 16 26 C -0.13 -1.31 7.66 37.16 0.28 -1.03 16 27 C -0.14 -1.57 7.97 37.16 0.30 -1.27 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.95 7.75 -51.93 -0.40 0.54 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.38 10.39 7.67 -40.82 -0.31 10.08 16 38 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 39 H 0.40 3.84 7.81 -40.82 -0.32 3.52 16 40 H 0.21 0.98 8.06 -52.49 -0.42 0.56 16 41 H 0.04 0.52 8.03 -51.93 -0.42 0.11 16 42 H 0.06 0.69 7.77 -51.93 -0.40 0.29 16 43 H 0.09 1.20 4.80 -51.93 -0.25 0.95 16 44 H 0.05 0.57 8.13 -51.93 -0.42 0.14 16 45 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 46 H 0.06 0.63 8.10 -51.93 -0.42 0.20 16 47 H 0.08 1.01 4.45 -51.93 -0.23 0.78 16 48 H 0.06 0.65 7.75 -51.93 -0.40 0.25 16 49 H 0.04 0.43 7.99 -51.93 -0.42 0.01 16 LS Contribution 399.40 15.07 6.02 6.02 Total: -1.00 -32.72 399.40 -9.23 -41.95 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -8.16 Total: 8.43 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: 0.27 Total: -5.68 kcal Atomic # 7 Polarization: -60.41 SS G_CDS: 0.03 Total: -60.38 kcal Atomic # 8 Polarization: -6.95 SS G_CDS: 0.05 Total: -6.90 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Atomic # 16 Polarization: 1.48 SS G_CDS: -2.41 Total: -0.92 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.72 -9.23 -41.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485743409.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.774 kcal (2) G-P(sol) polarization free energy of solvation -32.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds