Wall clock time and date at job start Tue Mar 31 2020 22:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47051 * 2 1 4 4 C 1.53001 * 109.47043 * 120.00446 * 2 1 3 5 5 C 1.53002 * 109.46921 * 184.99526 * 4 2 1 6 6 C 1.52992 * 109.47039 * 180.02562 * 5 4 2 7 7 N 1.46499 * 109.47116 * 180.02562 * 6 5 4 8 8 C 1.36938 * 120.00119 * 179.97438 * 7 6 5 9 9 H 1.08007 * 119.99804 * 0.02562 * 8 7 6 10 10 C 1.38813 * 120.00117 * 179.97438 * 8 7 6 11 11 N 1.31616 * 120.00013 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99949 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47211 * 0.02562 * 12 10 8 14 14 H 1.48497 * 109.47051 * 120.00617 * 12 10 8 15 15 H 1.48506 * 109.47170 * 240.00421 * 12 10 8 16 16 N 1.46504 * 109.46412 * 240.00385 * 2 1 3 17 17 C 1.34774 * 120.00116 * 85.00526 * 16 2 1 18 18 O 1.21690 * 119.99840 * 359.97438 * 17 16 2 19 19 C 1.46680 * 120.00083 * 179.97438 * 17 16 2 20 20 S 1.76214 * 126.13005 * 353.83572 * 19 17 16 21 21 C 1.70954 * 90.31246 * 179.97438 * 20 19 17 22 22 N 1.29429 * 110.39460 * 0.34685 * 21 20 19 23 23 C 1.30947 * 117.35951 * 359.72550 * 22 21 20 24 24 C 1.50695 * 122.90164 * 179.97438 * 23 22 21 25 25 C 1.53002 * 109.47417 * 242.94245 * 24 23 22 26 26 C 1.53006 * 109.47319 * 2.94352 * 24 23 22 27 27 C 1.53001 * 109.47072 * 122.94180 * 24 23 22 28 28 H 1.08997 * 109.47117 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46646 * 299.99623 * 1 2 3 30 30 H 1.09001 * 109.47101 * 59.99477 * 1 2 3 31 31 H 1.08994 * 109.47098 * 304.99801 * 4 2 1 32 32 H 1.09001 * 109.46711 * 64.99611 * 4 2 1 33 33 H 1.08998 * 109.46832 * 300.00424 * 5 4 2 34 34 H 1.08999 * 109.46826 * 59.99937 * 5 4 2 35 35 H 1.09000 * 109.47394 * 300.00383 * 6 5 4 36 36 H 1.08999 * 109.47418 * 60.00232 * 6 5 4 37 37 H 0.96998 * 120.00452 * 359.97438 * 7 6 5 38 38 H 0.97002 * 119.99828 * 179.97438 * 11 10 8 39 39 H 0.97000 * 119.99690 * 264.99729 * 16 2 1 40 40 H 1.07999 * 124.80339 * 180.02562 * 21 20 19 41 41 H 1.09001 * 109.47137 * 76.67958 * 25 24 23 42 42 H 1.08997 * 109.47433 * 196.68678 * 25 24 23 43 43 H 1.09006 * 109.46537 * 316.68450 * 25 24 23 44 44 H 1.08998 * 109.46986 * 59.99701 * 26 24 23 45 45 H 1.08998 * 109.47325 * 180.02562 * 26 24 23 46 46 H 1.08999 * 109.46492 * 300.00122 * 26 24 23 47 47 H 1.08996 * 109.47420 * 41.04617 * 27 24 23 48 48 H 1.08999 * 109.47244 * 161.04789 * 27 24 23 49 49 H 1.09003 * 109.47208 * 281.04510 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5649 -0.6135 1.3136 6 6 4.0749 -1.3353 2.5623 7 7 5.5349 -1.2315 2.6243 8 6 6.2187 -1.8057 3.6625 9 1 5.6817 -2.3355 4.4355 10 6 7.6022 -1.7078 3.7210 11 7 8.2566 -1.0627 2.7788 12 14 8.5349 -2.4906 5.1376 13 1 7.5745 -3.1512 6.0576 14 1 9.4855 -3.5002 4.6065 15 1 9.2862 -1.4428 5.8746 16 7 2.0182 -0.6906 -1.1963 17 6 2.1470 -0.0182 -2.3572 18 8 1.8573 1.1625 -2.4118 19 6 2.6363 -0.7094 -3.5548 20 16 3.2428 -2.3624 -3.6254 21 6 3.5218 -2.1982 -5.3040 22 7 3.1857 -1.0139 -5.7034 23 6 2.7095 -0.1885 -4.8053 24 6 2.2805 1.2186 -5.1324 25 6 3.1611 2.2106 -4.3699 26 6 2.4253 1.4594 -6.6364 27 6 0.8193 1.4144 -4.7230 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.6054 -0.2619 2.1369 32 1 1.7516 -1.7716 1.2054 33 1 3.9994 -1.0729 0.4258 34 1 3.8533 0.4368 1.3572 35 1 3.6404 -0.8763 3.4504 36 1 3.7866 -2.3856 2.5182 37 1 6.0173 -0.7561 1.9300 38 1 9.2233 -0.9940 2.8198 39 1 2.2489 -1.6317 -1.1528 40 1 3.9265 -2.9715 -5.9401 41 1 4.1327 2.2839 -4.8585 42 1 2.6830 3.1901 -4.3630 43 1 3.2949 1.8643 -3.3451 44 1 1.7979 0.7526 -7.1796 45 1 2.1154 2.4772 -6.8729 46 1 3.4662 1.3198 -6.9280 47 1 0.6434 0.9314 -3.7619 48 1 0.6053 2.4799 -4.6387 49 1 0.1683 0.9716 -5.4767 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485743409.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:33 Heat of formation + Delta-G solvation = -9.825747 kcal Electronic energy + Delta-G solvation = -27649.798722 eV Core-core repulsion = 23931.048825 eV Total energy + Delta-G solvation = -3718.749896 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.93521 -40.36388 -38.07279 -36.99871 -36.36606 -34.22429 -32.87392 -31.36203 -30.49047 -28.26682 -28.15966 -27.25582 -26.72001 -24.86908 -23.56576 -22.39991 -22.21865 -21.67066 -20.15388 -19.12394 -18.77933 -17.82637 -17.37140 -16.70322 -16.57782 -16.21591 -15.81601 -15.69875 -15.48652 -15.41557 -15.30313 -15.09612 -14.61918 -14.34491 -14.25329 -13.89276 -13.44313 -13.23172 -13.18810 -13.06316 -12.99596 -12.83493 -12.80706 -12.44551 -12.38145 -12.13373 -12.03004 -11.94256 -11.88129 -11.87372 -11.79802 -11.68281 -11.48291 -10.94734 -10.85054 -10.66746 -10.56110 -10.04240 -9.83910 -9.00923 -7.96136 -5.25449 -0.77200 0.19838 0.56422 1.41605 1.46886 1.47917 1.58131 2.07864 2.09931 2.55388 3.10025 3.37813 3.58958 3.70284 3.89738 3.96579 4.02036 4.10129 4.10391 4.28744 4.30292 4.39834 4.42137 4.58722 4.66858 4.78813 4.81677 4.83076 4.85982 4.87235 4.90507 4.92336 4.98769 5.01482 5.10199 5.12368 5.18820 5.31634 5.33301 5.37415 5.42693 5.47265 5.49446 5.50388 5.64010 6.26438 6.38310 6.60141 7.09842 7.31970 8.09167 8.31019 9.27804 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013171 B = 0.002603 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.451197 B =10754.071289 C =11606.371383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.146 3.854 3 H 0.073 0.927 4 C -0.111 4.111 5 C -0.113 4.113 6 C 0.150 3.850 7 N -0.751 5.751 8 C -0.245 4.245 9 H 0.077 0.923 10 C -0.079 4.079 11 N -0.971 5.971 12 Si 0.975 3.025 13 H -0.264 1.264 14 H -0.292 1.292 15 H -0.294 1.294 16 N -0.711 5.711 17 C 0.587 3.413 18 O -0.526 6.526 19 C -0.320 4.320 20 S 0.198 5.802 21 C 0.043 3.957 22 N -0.493 5.493 23 C 0.147 3.853 24 C 0.005 3.995 25 C -0.137 4.137 26 C -0.121 4.121 27 C -0.135 4.135 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.048 0.952 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.054 0.946 34 H 0.047 0.953 35 H 0.021 0.979 36 H 0.026 0.974 37 H 0.371 0.629 38 H 0.251 0.749 39 H 0.404 0.596 40 H 0.243 0.757 41 H 0.042 0.958 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.056 0.944 45 H 0.066 0.934 46 H 0.051 0.949 47 H 0.068 0.932 48 H 0.062 0.938 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.656 -1.626 -17.704 25.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.043 3.957 3 H 0.091 0.909 4 C -0.149 4.149 5 C -0.151 4.151 6 C 0.024 3.976 7 N -0.393 5.393 8 C -0.376 4.376 9 H 0.095 0.905 10 C -0.271 4.271 11 N -0.622 5.622 12 Si 0.804 3.196 13 H -0.188 1.188 14 H -0.219 1.219 15 H -0.221 1.221 16 N -0.362 5.362 17 C 0.374 3.626 18 O -0.406 6.406 19 C -0.445 4.445 20 S 0.454 5.546 21 C -0.251 4.251 22 N -0.207 5.207 23 C 0.008 3.992 24 C 0.003 3.997 25 C -0.195 4.195 26 C -0.178 4.178 27 C -0.193 4.193 28 H 0.088 0.912 29 H 0.099 0.901 30 H 0.067 0.933 31 H 0.113 0.887 32 H 0.104 0.896 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.039 0.961 36 H 0.044 0.956 37 H 0.203 0.797 38 H 0.060 0.940 39 H 0.239 0.761 40 H 0.259 0.741 41 H 0.061 0.939 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.075 0.925 45 H 0.085 0.915 46 H 0.070 0.930 47 H 0.087 0.913 48 H 0.081 0.919 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -18.632 -1.682 -17.386 25.539 hybrid contribution 1.157 0.244 0.175 1.195 sum -17.476 -1.437 -17.211 24.570 Atomic orbital electron populations 1.22099 0.93512 1.02957 1.02646 1.21041 0.94916 0.96725 0.83057 0.90857 1.21776 0.93541 1.02233 0.97368 1.21592 0.96516 0.99790 0.97205 1.20856 0.83136 0.97403 0.96209 1.42669 1.02587 1.65886 1.28196 1.19706 0.89987 1.26221 1.01734 0.90473 1.25617 0.97553 1.02486 1.01425 1.69835 1.07033 1.48887 1.36468 0.85052 0.78480 0.77360 0.78753 1.18827 1.21912 1.22118 1.46008 1.66884 1.14112 1.09225 1.16766 0.77695 0.86076 0.82061 1.90771 1.50317 1.15262 1.84254 1.25526 1.18684 1.00918 0.99330 1.83960 1.54380 1.07439 1.08783 1.29432 1.00138 0.97979 0.97591 1.66132 1.15289 1.02963 1.36291 1.20867 0.94328 0.97409 0.86641 1.19217 0.96671 0.86846 0.97000 1.22044 0.97954 0.98401 1.01053 1.21691 1.01875 1.01586 0.92697 1.22059 0.92798 1.02498 1.01899 0.91208 0.90090 0.93323 0.88731 0.89555 0.92739 0.93399 0.96145 0.95646 0.79735 0.94033 0.76057 0.74148 0.93937 0.91637 0.91685 0.92528 0.91502 0.92969 0.91323 0.91876 0.93236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 9.48 71.98 0.68 -1.86 16 2 C 0.15 2.99 2.57 44.99 0.12 3.11 16 3 H 0.07 1.82 7.58 -2.39 -0.02 1.80 16 4 C -0.11 -2.28 4.75 30.60 0.15 -2.14 16 5 C -0.11 -3.41 5.22 30.59 0.16 -3.25 16 6 C 0.15 5.78 6.26 86.38 0.54 6.32 16 7 N -0.75 -38.65 5.60 -343.46 -1.92 -40.57 16 8 C -0.24 -13.77 9.99 84.03 0.84 -12.93 16 9 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 10 C -0.08 -4.57 5.50 84.86 0.47 -4.10 16 11 N -0.97 -60.22 13.06 21.65 0.28 -59.93 16 12 Si 0.97 46.19 29.55 68.60 2.03 48.22 16 13 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 14 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 15 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 16 N -0.71 -14.95 4.52 -446.49 -2.02 -16.97 16 17 C 0.59 14.53 6.60 86.45 0.57 15.10 16 18 O -0.53 -14.95 9.66 -4.32 -0.04 -14.99 16 19 C -0.32 -7.34 6.06 23.88 0.14 -7.19 16 20 S 0.20 3.24 22.37 -56.49 -1.26 1.97 16 21 C 0.04 0.65 12.22 130.60 1.60 2.25 16 22 N -0.49 -10.59 9.53 -190.40 -1.81 -12.41 16 23 C 0.15 3.48 5.45 42.09 0.23 3.71 16 24 C 0.01 0.12 0.75 -52.93 -0.04 0.08 16 25 C -0.14 -3.43 8.01 71.98 0.58 -2.85 16 26 C -0.12 -2.41 7.66 71.98 0.55 -1.86 16 27 C -0.14 -3.00 7.97 71.98 0.57 -2.43 16 28 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.05 0.93 8.14 -2.39 -0.02 0.92 16 31 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.05 1.70 7.75 -2.39 -0.02 1.68 16 34 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.37 20.53 7.67 -92.71 -0.71 19.82 16 38 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 39 H 0.40 7.32 7.81 -92.71 -0.72 6.60 16 40 H 0.24 1.56 8.06 -2.91 -0.02 1.53 16 41 H 0.04 1.03 8.03 -2.39 -0.02 1.01 16 42 H 0.06 1.52 7.77 -2.39 -0.02 1.50 16 43 H 0.06 1.92 4.80 -2.38 -0.01 1.91 16 44 H 0.06 1.10 8.13 -2.39 -0.02 1.08 16 45 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.05 1.09 8.10 -2.39 -0.02 1.07 16 47 H 0.07 1.73 4.45 -2.39 -0.01 1.72 16 48 H 0.06 1.34 7.75 -2.39 -0.02 1.32 16 49 H 0.05 0.99 7.99 -2.39 -0.02 0.97 16 Total: -1.00 -70.89 399.40 1.92 -68.97 By element: Atomic # 1 Polarization: 34.23 SS G_CDS: -0.48 Total: 33.75 kcal Atomic # 6 Polarization: -15.19 SS G_CDS: 7.15 Total: -8.04 kcal Atomic # 7 Polarization: -124.41 SS G_CDS: -5.48 Total: -129.88 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.04 Total: -14.99 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Atomic # 16 Polarization: 3.24 SS G_CDS: -1.26 Total: 1.97 kcal Total: -70.89 1.92 -68.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485743409.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.143 kcal (2) G-P(sol) polarization free energy of solvation -70.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds