Wall clock time and date at job start Tue Mar 31 2020 22:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46939 * 2 1 4 4 C 1.52996 * 109.47238 * 239.99819 * 2 1 3 5 5 N 1.46498 * 109.47059 * 64.99625 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31624 * 119.99698 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00072 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47159 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.47290 * 120.00044 * 10 8 6 13 13 H 1.48503 * 109.47163 * 240.00049 * 10 8 6 14 14 C 1.53003 * 109.47108 * 119.99256 * 2 1 3 15 15 N 1.46490 * 109.47559 * 295.00069 * 14 2 1 16 16 C 1.34773 * 120.00384 * 179.97438 * 15 14 2 17 17 O 1.21689 * 120.00048 * 0.02562 * 16 15 14 18 18 C 1.46682 * 120.00228 * 179.97438 * 16 15 14 19 19 C 1.35661 * 126.13403 * 0.03234 * 18 16 15 20 20 N 1.30936 * 114.19330 * 179.97438 * 19 18 16 21 21 C 1.29433 * 117.36495 * 0.02562 * 20 19 18 22 22 C 1.50703 * 124.80166 * 180.02562 * 21 20 19 23 23 C 1.52999 * 109.47200 * 89.97312 * 22 21 20 24 24 C 1.53006 * 109.47018 * 60.00013 * 23 22 21 25 25 C 1.52999 * 109.46666 * 179.97438 * 23 22 21 26 26 C 1.52991 * 109.47041 * 299.99732 * 23 22 21 27 27 S 1.70949 * 110.39057 * 359.72168 * 21 20 19 28 28 H 1.09001 * 109.46786 * 300.00471 * 1 2 3 29 29 H 1.09001 * 109.47309 * 60.00201 * 1 2 3 30 30 H 1.08995 * 109.46988 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47066 * 304.99893 * 4 2 1 32 32 H 1.08994 * 109.46974 * 185.00040 * 4 2 1 33 33 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 34 34 H 0.96999 * 119.99739 * 180.02562 * 9 8 6 35 35 H 1.08998 * 109.46886 * 55.00501 * 14 2 1 36 36 H 1.09002 * 109.46923 * 174.99751 * 14 2 1 37 37 H 0.97002 * 120.00315 * 0.02562 * 15 14 2 38 38 H 1.07997 * 122.90071 * 0.02562 * 19 18 16 39 39 H 1.09008 * 109.46431 * 209.97399 * 22 21 20 40 40 H 1.08992 * 109.47142 * 329.96951 * 22 21 20 41 41 H 1.09001 * 109.47090 * 59.99570 * 24 23 22 42 42 H 1.08995 * 109.46795 * 179.97438 * 24 23 22 43 43 H 1.08995 * 109.46924 * 299.99528 * 24 23 22 44 44 H 1.09001 * 109.47023 * 60.00334 * 25 23 22 45 45 H 1.09004 * 109.46729 * 179.97438 * 25 23 22 46 46 H 1.08996 * 109.47502 * 299.99965 * 25 23 22 47 47 H 1.08995 * 109.47417 * 60.00156 * 26 23 22 48 48 H 1.09004 * 109.47101 * 180.02562 * 26 23 22 49 49 H 1.09001 * 109.47270 * 300.00048 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6524 0.0353 -2.4423 6 6 2.0064 -0.4178 -3.6852 7 1 2.5675 -1.3351 -3.7860 8 6 1.6441 0.3020 -4.8155 9 7 0.9607 1.4202 -4.6925 10 14 2.1263 -0.3163 -6.5109 11 1 2.8842 -1.5863 -6.3775 12 1 0.9025 -0.5532 -7.3180 13 1 2.9751 0.6988 -7.1851 14 6 2.0400 -0.7211 1.2494 15 7 1.6525 0.0355 2.4424 16 6 1.9956 -0.4133 3.6660 17 8 2.6278 -1.4469 3.7798 18 6 1.6081 0.3447 4.8605 19 6 0.9069 1.5059 4.8785 20 7 0.6891 1.9826 6.0784 21 6 1.1560 1.3089 7.0801 22 6 1.0029 1.7016 8.5270 23 6 -0.2815 1.0887 9.0887 24 6 -0.2096 -0.4358 8.9789 25 6 -0.4364 1.4869 10.5578 26 6 -1.4823 1.6014 8.2914 27 16 1.9634 -0.0939 6.5299 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.6054 -1.7199 -1.2950 32 1 3.1263 -0.7995 -1.2055 33 1 1.1488 0.8593 -2.3518 34 1 0.7072 1.9230 -5.4823 35 1 1.6054 -1.7197 1.2953 36 1 3.1263 -0.7993 1.2057 37 1 1.1483 0.8592 2.3518 38 1 0.5579 1.9944 3.9808 39 1 1.8586 1.3363 9.0950 40 1 0.9518 2.7875 8.6053 41 1 0.6461 -0.8010 9.5469 42 1 -1.1244 -0.8724 9.3795 43 1 -0.0990 -0.7198 7.9324 44 1 -0.4875 2.5729 10.6364 45 1 -1.3517 1.0506 10.9579 46 1 0.4192 1.1213 11.1256 47 1 -1.3717 1.3174 7.2449 48 1 -2.3974 1.1651 8.6919 49 1 -1.5335 2.6874 8.3697 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495782147.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:21 Heat of formation + Delta-G solvation = -7.605433 kcal Electronic energy + Delta-G solvation = -26310.702353 eV Core-core repulsion = 22592.048737 eV Total energy + Delta-G solvation = -3718.653616 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.55972 -39.52940 -37.84994 -36.85487 -34.45036 -32.72341 -31.53914 -30.05812 -28.73285 -27.79529 -27.66083 -26.44223 -25.31131 -24.69327 -22.71544 -21.79507 -20.35514 -19.95880 -19.21883 -18.26561 -17.53239 -16.91543 -16.03257 -15.97593 -15.45956 -15.18531 -15.01575 -14.70222 -14.54001 -14.44662 -14.03398 -13.80390 -13.61321 -13.45818 -13.06324 -12.92608 -12.66795 -12.52874 -12.36015 -12.21213 -12.10385 -12.08835 -11.86014 -11.42556 -11.26185 -11.17337 -11.08627 -10.94356 -10.75931 -10.65004 -10.54756 -10.37183 -10.01646 -9.82953 -9.73129 -9.69215 -9.28206 -9.07206 -8.89381 -6.93554 -5.78346 -3.06789 -0.07805 0.81620 1.35101 2.15253 2.99660 3.09994 3.42948 3.48986 3.51015 3.61219 4.22088 4.26364 4.35209 4.56806 4.58316 4.71110 4.87193 4.93582 4.99630 5.02233 5.14549 5.17164 5.24177 5.31234 5.33649 5.34188 5.47963 5.50224 5.56574 5.57494 5.67160 5.76426 5.76651 5.85772 5.92133 5.92960 5.96089 6.06457 6.19315 6.33683 6.39427 6.62644 6.74403 6.83732 7.25520 7.30417 7.70099 7.98615 8.40769 9.52205 10.09181 10.43901 11.44687 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.031131 B = 0.001718 C = 0.001670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.207118 B =16289.846752 C =16759.607312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 H 0.078 0.922 4 C 0.161 3.839 5 N -0.731 5.731 6 C -0.239 4.239 7 H 0.071 0.929 8 C -0.014 4.014 9 N -0.934 5.934 10 Si 0.907 3.093 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.292 1.292 14 C 0.128 3.872 15 N -0.711 5.711 16 C 0.591 3.409 17 O -0.537 6.537 18 C -0.297 4.297 19 C 0.093 3.907 20 N -0.472 5.472 21 C 0.048 3.952 22 C -0.039 4.039 23 C -0.063 4.063 24 C -0.154 4.154 25 C -0.140 4.140 26 C -0.140 4.140 27 S 0.227 5.773 28 H 0.041 0.959 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.023 0.977 32 H 0.021 0.979 33 H 0.384 0.616 34 H 0.254 0.746 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.401 0.599 38 H 0.181 0.819 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.059 0.941 42 H 0.062 0.938 43 H 0.056 0.944 44 H 0.058 0.942 45 H 0.060 0.940 46 H 0.057 0.943 47 H 0.058 0.942 48 H 0.054 0.946 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.814 0.978 33.198 33.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.130 4.130 3 H 0.096 0.904 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.370 4.370 7 H 0.089 0.911 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.219 1.219 14 C 0.004 3.996 15 N -0.362 5.362 16 C 0.376 3.624 17 O -0.416 6.416 18 C -0.421 4.421 19 C -0.066 4.066 20 N -0.186 5.186 21 C -0.226 4.226 22 C -0.079 4.079 23 C -0.065 4.065 24 C -0.212 4.212 25 C -0.197 4.197 26 C -0.198 4.198 27 S 0.485 5.515 28 H 0.060 0.940 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.041 0.959 32 H 0.039 0.961 33 H 0.218 0.782 34 H 0.064 0.936 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.236 0.764 38 H 0.198 0.802 39 H 0.107 0.893 40 H 0.117 0.883 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.079 0.921 46 H 0.076 0.924 47 H 0.077 0.923 48 H 0.073 0.927 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.020 -0.249 33.766 33.828 hybrid contribution -0.498 0.916 -2.008 2.262 sum -2.518 0.668 31.759 31.866 Atomic orbital electron populations 1.21803 0.94585 1.02035 1.01542 1.21569 0.96784 1.00577 0.94080 0.90409 1.20570 0.96648 0.94229 0.85307 1.42340 1.66817 1.27780 1.00589 1.19292 1.28634 1.05411 0.83668 0.91069 1.24738 1.01031 0.97381 0.97881 1.69668 1.43684 1.16530 1.28398 0.86106 0.77608 0.77830 0.84594 1.20533 1.21878 1.21875 1.21501 1.00425 0.95282 0.82360 1.45817 1.57172 1.27857 1.05359 1.16699 0.79537 0.84208 0.81974 1.90854 1.40256 1.23879 1.86594 1.25830 1.13601 1.03650 0.99038 1.22198 0.96211 0.92150 0.96059 1.66149 1.21683 1.32661 0.98150 1.27467 0.98985 0.95893 1.00285 1.20508 0.98874 1.02914 0.85650 1.20532 0.94293 0.95762 0.95930 1.22090 1.02458 0.94366 1.02269 1.21849 1.02132 1.01651 0.94070 1.21876 0.96446 1.01297 1.00161 1.84106 1.49134 1.22307 0.95914 0.93958 0.91020 0.92729 0.95923 0.96069 0.78201 0.93578 0.90962 0.90959 0.76382 0.80237 0.89334 0.88329 0.92167 0.91892 0.92493 0.92255 0.92103 0.92366 0.92264 0.92713 0.92220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 8.94 37.16 0.33 -1.72 16 2 C -0.11 -1.66 2.46 -90.62 -0.22 -1.89 16 3 H 0.08 1.18 8.14 -51.92 -0.42 0.75 16 4 C 0.16 3.14 5.65 -4.04 -0.02 3.12 16 5 N -0.73 -18.14 5.33 -59.91 -0.32 -18.46 16 6 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 7 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 8 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 9 N -0.93 -28.03 13.06 55.49 0.72 -27.31 16 10 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 13 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 14 C 0.13 1.72 5.06 -4.05 -0.02 1.70 16 15 N -0.71 -8.34 5.27 -61.62 -0.32 -8.67 16 16 C 0.59 7.85 7.79 -12.85 -0.10 7.75 16 17 O -0.54 -9.00 16.97 5.20 0.09 -8.91 16 18 C -0.30 -3.27 6.48 -37.10 -0.24 -3.51 16 19 C 0.09 0.89 10.93 -18.86 -0.21 0.68 16 20 N -0.47 -4.62 9.66 -11.50 -0.11 -4.73 16 21 C 0.05 0.40 4.94 -13.29 -0.07 0.33 16 22 C -0.04 -0.22 4.86 -27.88 -0.14 -0.36 16 23 C -0.06 -0.34 0.80 -154.51 -0.12 -0.46 16 24 C -0.15 -0.87 8.01 37.16 0.30 -0.57 16 25 C -0.14 -0.55 8.47 37.16 0.31 -0.24 16 26 C -0.14 -0.93 8.17 37.15 0.30 -0.62 16 27 S 0.23 2.10 21.35 -107.50 -2.30 -0.20 16 28 H 0.04 0.49 7.18 -51.93 -0.37 0.11 16 29 H 0.07 1.21 7.18 -51.93 -0.37 0.84 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.38 9.91 6.85 -40.82 -0.28 9.63 16 34 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.40 3.76 6.36 -40.82 -0.26 3.50 16 38 H 0.18 1.31 7.15 -52.49 -0.38 0.93 16 39 H 0.09 0.36 8.14 -51.92 -0.42 -0.06 16 40 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.06 0.40 6.01 -51.93 -0.31 0.09 16 44 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 45 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 46 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 47 H 0.06 0.50 6.64 -51.93 -0.34 0.15 16 48 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 406.20 15.07 6.12 6.12 Total: -1.00 -33.13 406.20 -9.48 -42.61 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -8.20 Total: 5.26 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: -0.14 Total: -3.10 kcal Atomic # 7 Polarization: -59.14 SS G_CDS: -0.03 Total: -59.17 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.09 Total: -8.91 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Atomic # 16 Polarization: 2.10 SS G_CDS: -2.30 Total: -0.20 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.13 -9.48 -42.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495782147.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.003 kcal (2) G-P(sol) polarization free energy of solvation -33.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds