Wall clock time and date at job start Tue Mar 31 2020 22:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46939 * 2 1 4 4 C 1.52996 * 109.47238 * 239.99819 * 2 1 3 5 5 N 1.46498 * 109.47059 * 64.99625 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31624 * 119.99698 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00072 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47159 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.47290 * 120.00044 * 10 8 6 13 13 H 1.48503 * 109.47163 * 240.00049 * 10 8 6 14 14 C 1.53003 * 109.47108 * 119.99256 * 2 1 3 15 15 N 1.46490 * 109.47559 * 295.00069 * 14 2 1 16 16 C 1.34773 * 120.00384 * 179.97438 * 15 14 2 17 17 O 1.21689 * 120.00048 * 0.02562 * 16 15 14 18 18 C 1.46682 * 120.00228 * 179.97438 * 16 15 14 19 19 C 1.35661 * 126.13403 * 0.03234 * 18 16 15 20 20 N 1.30936 * 114.19330 * 179.97438 * 19 18 16 21 21 C 1.29433 * 117.36495 * 0.02562 * 20 19 18 22 22 C 1.50703 * 124.80166 * 180.02562 * 21 20 19 23 23 C 1.52999 * 109.47200 * 89.97312 * 22 21 20 24 24 C 1.53006 * 109.47018 * 60.00013 * 23 22 21 25 25 C 1.52999 * 109.46666 * 179.97438 * 23 22 21 26 26 C 1.52991 * 109.47041 * 299.99732 * 23 22 21 27 27 S 1.70949 * 110.39057 * 359.72168 * 21 20 19 28 28 H 1.09001 * 109.46786 * 300.00471 * 1 2 3 29 29 H 1.09001 * 109.47309 * 60.00201 * 1 2 3 30 30 H 1.08995 * 109.46988 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47066 * 304.99893 * 4 2 1 32 32 H 1.08994 * 109.46974 * 185.00040 * 4 2 1 33 33 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 34 34 H 0.96999 * 119.99739 * 180.02562 * 9 8 6 35 35 H 1.08998 * 109.46886 * 55.00501 * 14 2 1 36 36 H 1.09002 * 109.46923 * 174.99751 * 14 2 1 37 37 H 0.97002 * 120.00315 * 0.02562 * 15 14 2 38 38 H 1.07997 * 122.90071 * 0.02562 * 19 18 16 39 39 H 1.09008 * 109.46431 * 209.97399 * 22 21 20 40 40 H 1.08992 * 109.47142 * 329.96951 * 22 21 20 41 41 H 1.09001 * 109.47090 * 59.99570 * 24 23 22 42 42 H 1.08995 * 109.46795 * 179.97438 * 24 23 22 43 43 H 1.08995 * 109.46924 * 299.99528 * 24 23 22 44 44 H 1.09001 * 109.47023 * 60.00334 * 25 23 22 45 45 H 1.09004 * 109.46729 * 179.97438 * 25 23 22 46 46 H 1.08996 * 109.47502 * 299.99965 * 25 23 22 47 47 H 1.08995 * 109.47417 * 60.00156 * 26 23 22 48 48 H 1.09004 * 109.47101 * 180.02562 * 26 23 22 49 49 H 1.09001 * 109.47270 * 300.00048 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6524 0.0353 -2.4423 6 6 2.0064 -0.4178 -3.6852 7 1 2.5675 -1.3351 -3.7860 8 6 1.6441 0.3020 -4.8155 9 7 0.9607 1.4202 -4.6925 10 14 2.1263 -0.3163 -6.5109 11 1 2.8842 -1.5863 -6.3775 12 1 0.9025 -0.5532 -7.3180 13 1 2.9751 0.6988 -7.1851 14 6 2.0400 -0.7211 1.2494 15 7 1.6525 0.0355 2.4424 16 6 1.9956 -0.4133 3.6660 17 8 2.6278 -1.4469 3.7798 18 6 1.6081 0.3447 4.8605 19 6 0.9069 1.5059 4.8785 20 7 0.6891 1.9826 6.0784 21 6 1.1560 1.3089 7.0801 22 6 1.0029 1.7016 8.5270 23 6 -0.2815 1.0887 9.0887 24 6 -0.2096 -0.4358 8.9789 25 6 -0.4364 1.4869 10.5578 26 6 -1.4823 1.6014 8.2914 27 16 1.9634 -0.0939 6.5299 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.6054 -1.7199 -1.2950 32 1 3.1263 -0.7995 -1.2055 33 1 1.1488 0.8593 -2.3518 34 1 0.7072 1.9230 -5.4823 35 1 1.6054 -1.7197 1.2953 36 1 3.1263 -0.7993 1.2057 37 1 1.1483 0.8592 2.3518 38 1 0.5579 1.9944 3.9808 39 1 1.8586 1.3363 9.0950 40 1 0.9518 2.7875 8.6053 41 1 0.6461 -0.8010 9.5469 42 1 -1.1244 -0.8724 9.3795 43 1 -0.0990 -0.7198 7.9324 44 1 -0.4875 2.5729 10.6364 45 1 -1.3517 1.0506 10.9579 46 1 0.4192 1.1213 11.1256 47 1 -1.3717 1.3174 7.2449 48 1 -2.3974 1.1651 8.6919 49 1 -1.5335 2.6874 8.3697 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495782147.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:20 Heat of formation + Delta-G solvation = -28.728915 kcal Electronic energy + Delta-G solvation = -26311.618336 eV Core-core repulsion = 22592.048737 eV Total energy + Delta-G solvation = -3719.569599 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.37247 -40.45528 -38.40852 -38.19367 -36.02065 -34.25418 -32.54369 -31.65750 -29.47871 -28.20118 -28.10500 -27.70594 -26.89221 -25.44253 -24.39709 -22.81589 -21.54743 -20.79531 -20.02773 -19.16584 -18.91416 -18.18209 -17.18749 -16.81108 -16.47419 -16.34394 -15.84082 -15.67936 -15.56586 -15.41786 -15.26444 -15.05217 -14.65358 -14.55399 -14.12314 -13.96901 -13.65170 -13.58553 -13.40507 -12.96573 -12.90458 -12.83668 -12.65698 -12.59516 -12.52095 -12.20495 -12.13527 -12.01396 -11.91246 -11.79181 -11.70398 -11.67397 -11.59736 -11.42434 -10.95619 -10.62259 -10.53310 -10.21490 -9.87297 -8.99341 -7.95963 -5.24027 -0.83080 0.09111 0.63527 1.35583 1.47903 1.47990 1.58346 2.07356 2.09931 2.56435 3.00036 3.38116 3.64762 3.70941 3.75823 3.81882 3.91169 3.94420 4.04589 4.11403 4.22049 4.34117 4.50941 4.52446 4.58890 4.68356 4.72314 4.74717 4.83411 4.89204 4.92829 4.93111 4.96525 5.02584 5.07624 5.09911 5.11929 5.21868 5.24047 5.36134 5.36368 5.44517 5.46137 5.50162 5.50366 6.26833 6.33451 6.55161 7.00588 7.33956 8.09134 8.33256 9.27639 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.031131 B = 0.001718 C = 0.001670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.207118 B =16289.846752 C =16759.607312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.094 4.094 3 H 0.080 0.920 4 C 0.156 3.844 5 N -0.741 5.741 6 C -0.246 4.246 7 H 0.074 0.926 8 C -0.074 4.074 9 N -0.967 5.967 10 Si 0.972 3.028 11 H -0.268 1.268 12 H -0.293 1.293 13 H -0.293 1.293 14 C 0.139 3.861 15 N -0.700 5.700 16 C 0.594 3.406 17 O -0.579 6.579 18 C -0.327 4.327 19 C 0.106 3.894 20 N -0.492 5.492 21 C 0.065 3.935 22 C -0.042 4.042 23 C -0.059 4.059 24 C -0.156 4.156 25 C -0.136 4.136 26 C -0.139 4.139 27 S 0.227 5.773 28 H 0.075 0.925 29 H 0.044 0.956 30 H 0.052 0.948 31 H 0.023 0.977 32 H 0.021 0.979 33 H 0.377 0.623 34 H 0.251 0.749 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.414 0.586 38 H 0.201 0.799 39 H 0.110 0.890 40 H 0.106 0.894 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.040 0.960 44 H 0.063 0.937 45 H 0.062 0.938 46 H 0.068 0.932 47 H 0.038 0.962 48 H 0.057 0.943 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.844 1.259 35.083 35.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.113 4.113 3 H 0.099 0.901 4 C 0.029 3.971 5 N -0.384 5.384 6 C -0.378 4.378 7 H 0.092 0.908 8 C -0.266 4.266 9 N -0.618 5.618 10 Si 0.801 3.199 11 H -0.192 1.192 12 H -0.220 1.220 13 H -0.220 1.220 14 C 0.015 3.985 15 N -0.352 5.352 16 C 0.380 3.620 17 O -0.461 6.461 18 C -0.452 4.452 19 C -0.053 4.053 20 N -0.206 5.206 21 C -0.209 4.209 22 C -0.083 4.083 23 C -0.061 4.061 24 C -0.213 4.213 25 C -0.194 4.194 26 C -0.197 4.197 27 S 0.487 5.513 28 H 0.093 0.907 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.040 0.960 32 H 0.039 0.961 33 H 0.209 0.791 34 H 0.060 0.940 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.252 0.748 38 H 0.217 0.783 39 H 0.128 0.872 40 H 0.124 0.876 41 H 0.090 0.910 42 H 0.084 0.916 43 H 0.059 0.941 44 H 0.082 0.918 45 H 0.081 0.919 46 H 0.087 0.913 47 H 0.057 0.943 48 H 0.077 0.923 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.047 0.023 35.679 35.738 hybrid contribution -0.516 0.833 -2.464 2.652 sum -2.563 0.857 33.215 33.325 Atomic orbital electron populations 1.21742 0.93854 1.02032 1.01801 1.21339 0.97182 1.00170 0.92633 0.90124 1.20723 0.96614 0.94174 0.85553 1.42504 1.66683 1.27916 1.01331 1.19678 1.27782 1.05266 0.85100 0.90799 1.25531 1.01733 0.97873 1.01475 1.69810 1.45197 1.17781 1.29034 0.85089 0.77091 0.77606 0.80064 1.19227 1.21995 1.21996 1.21225 0.99934 0.95068 0.82252 1.45632 1.56936 1.28064 1.04538 1.16931 0.78678 0.83711 0.82658 1.90828 1.42294 1.25756 1.87187 1.25620 1.15998 1.04629 0.98908 1.22539 0.94655 0.91306 0.96846 1.66252 1.22632 1.33253 0.98457 1.27985 0.96900 0.94785 1.01202 1.20739 0.99951 1.03504 0.84116 1.20515 0.93393 0.95444 0.96744 1.22110 1.03181 0.94647 1.01405 1.21824 1.02745 1.02009 0.92790 1.21862 0.97343 1.01341 0.99106 1.84084 1.49263 1.22825 0.95157 0.90653 0.93727 0.92880 0.95952 0.96126 0.79063 0.93985 0.91286 0.91585 0.74831 0.78257 0.87221 0.87589 0.91027 0.91580 0.94105 0.91810 0.91933 0.91273 0.94301 0.92350 0.92210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.81 8.94 71.98 0.64 -3.16 16 2 C -0.09 -2.75 2.46 -10.79 -0.03 -2.78 16 3 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 4 C 0.16 6.10 5.65 86.38 0.49 6.59 16 5 N -0.74 -37.06 5.33 -343.46 -1.83 -38.89 16 6 C -0.25 -13.79 9.99 84.03 0.84 -12.95 16 7 H 0.07 4.01 7.83 -2.91 -0.02 3.98 16 8 C -0.07 -4.23 5.50 84.86 0.47 -3.77 16 9 N -0.97 -58.73 13.06 21.65 0.28 -58.45 16 10 Si 0.97 46.23 29.55 68.60 2.03 48.25 16 11 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 12 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 13 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 14 C 0.14 3.65 5.06 86.38 0.44 4.08 16 15 N -0.70 -15.60 5.27 -467.10 -2.46 -18.06 16 16 C 0.59 15.46 7.79 86.45 0.67 16.14 16 17 O -0.58 -19.49 16.97 -4.31 -0.07 -19.56 16 18 C -0.33 -6.95 6.48 23.88 0.15 -6.79 16 19 C 0.11 1.88 10.93 84.23 0.92 2.80 16 20 N -0.49 -8.89 9.66 -190.31 -1.84 -10.73 16 21 C 0.07 0.99 4.94 88.46 0.44 1.42 16 22 C -0.04 -0.39 4.86 29.85 0.15 -0.25 16 23 C -0.06 -0.52 0.80 -52.18 -0.04 -0.56 16 24 C -0.16 -1.51 8.01 71.98 0.58 -0.93 16 25 C -0.14 -0.73 8.47 71.98 0.61 -0.12 16 26 C -0.14 -1.65 8.17 71.98 0.59 -1.06 16 27 S 0.23 4.02 21.35 -56.49 -1.21 2.81 16 28 H 0.07 1.58 7.18 -2.39 -0.02 1.56 16 29 H 0.04 1.50 7.18 -2.39 -0.02 1.48 16 30 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 32 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.38 19.73 6.85 -92.71 -0.64 19.09 16 34 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 35 H 0.07 1.88 8.14 -2.39 -0.02 1.87 16 36 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.41 6.95 6.36 -92.71 -0.59 6.36 16 38 H 0.20 2.48 7.15 -2.91 -0.02 2.46 16 39 H 0.11 0.58 8.14 -2.38 -0.02 0.56 16 40 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 42 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.04 0.53 6.01 -2.39 -0.01 0.52 16 44 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 45 H 0.06 0.34 8.14 -2.38 -0.02 0.32 16 46 H 0.07 0.24 8.14 -2.39 -0.02 0.23 16 47 H 0.04 0.62 6.64 -2.39 -0.02 0.60 16 48 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 49 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -71.36 406.20 1.54 -69.82 By element: Atomic # 1 Polarization: 26.42 SS G_CDS: -0.27 Total: 26.15 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: 6.91 Total: -1.34 kcal Atomic # 7 Polarization: -120.28 SS G_CDS: -5.85 Total: -126.13 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -0.07 Total: -19.56 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.25 kcal Atomic # 16 Polarization: 4.02 SS G_CDS: -1.21 Total: 2.81 kcal Total: -71.36 1.54 -69.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495782147.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.095 kcal (2) G-P(sol) polarization free energy of solvation -71.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds