Wall clock time and date at job start Tue Mar 31 2020 22:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 N 1.46504 * 109.47054 * 184.99999 * 4 2 1 6 6 C 1.36938 * 119.99997 * 180.02562 * 5 4 2 7 7 H 1.08000 * 119.99654 * 359.97438 * 6 5 4 8 8 C 1.38811 * 119.99791 * 180.02562 * 6 5 4 9 9 N 1.31622 * 119.99636 * 179.97438 * 8 6 5 10 10 Si 1.86793 * 120.00370 * 359.97438 * 8 6 5 11 11 H 1.48499 * 109.47330 * 89.99701 * 10 8 6 12 12 H 1.48503 * 109.47375 * 210.00124 * 10 8 6 13 13 H 1.48504 * 109.46903 * 330.00091 * 10 8 6 14 14 N 1.46499 * 109.46799 * 120.00100 * 2 1 3 15 15 C 1.46499 * 120.00271 * 60.00241 * 14 2 1 16 16 C 1.34783 * 119.99826 * 240.00088 * 14 2 1 17 17 O 1.21278 * 120.00109 * 359.97438 * 16 14 2 18 18 C 1.50703 * 120.00065 * 180.02562 * 16 14 2 19 19 H 1.08999 * 109.46819 * 299.99778 * 18 16 14 20 20 C 1.53001 * 109.46870 * 59.99777 * 18 16 14 21 21 N 1.46503 * 109.47153 * 179.97438 * 18 16 14 22 22 C 1.34771 * 119.99684 * 154.99584 * 21 18 16 23 23 O 1.21284 * 120.00471 * 0.02562 * 22 21 18 24 24 C 1.50700 * 119.99804 * 179.97438 * 22 21 18 25 25 N 1.46500 * 109.47089 * 180.02562 * 24 22 21 26 26 C 1.34605 * 126.43377 * 125.00569 * 25 24 22 27 27 N 1.31066 * 106.67867 * 180.02562 * 26 25 24 28 28 N 1.28842 * 107.98965 * 359.97438 * 27 26 25 29 29 N 1.28738 * 109.39978 * 359.73641 * 28 27 26 30 30 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 31 31 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 33 33 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 34 34 H 1.09002 * 109.46642 * 65.00413 * 4 2 1 35 35 H 0.97000 * 119.99700 * 0.02562 * 5 4 2 36 36 H 0.96997 * 119.99537 * 179.97438 * 9 8 6 37 37 H 1.08994 * 109.47057 * 89.99771 * 15 14 2 38 38 H 1.09006 * 109.46711 * 209.99932 * 15 14 2 39 39 H 1.08998 * 109.46853 * 329.99725 * 15 14 2 40 40 H 1.08992 * 109.47481 * 299.99849 * 20 18 16 41 41 H 1.08999 * 109.47399 * 60.00356 * 20 18 16 42 42 H 1.09000 * 109.46815 * 179.97438 * 20 18 16 43 43 H 0.97001 * 119.99743 * 335.00228 * 21 18 16 44 44 H 1.09000 * 109.47503 * 300.00584 * 24 22 21 45 45 H 1.09006 * 109.46567 * 60.00400 * 24 22 21 46 46 H 1.07999 * 126.66014 * 0.03842 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.1840 -1.4380 -2.2071 7 1 3.6469 -1.8432 -3.0519 8 6 5.5674 -1.5381 -2.1511 9 7 6.2246 -2.1264 -3.1280 10 14 6.4962 -0.8378 -0.6896 11 1 6.6267 -1.8805 0.3597 12 1 7.8473 -0.4014 -1.1246 13 1 5.7528 0.3253 -0.1418 14 7 2.0183 -0.6906 1.1962 15 6 1.6644 -2.0932 1.4280 16 6 2.7931 -0.0356 2.0834 17 8 3.0865 1.1254 1.8913 18 6 3.2959 -0.7462 3.3136 19 1 2.4483 -1.0891 3.9070 20 6 4.1461 -1.9479 2.8967 21 7 4.1102 0.1745 4.1109 22 6 4.2484 -0.0237 5.4368 23 8 3.6991 -0.9644 5.9699 24 6 5.0864 0.9230 6.2568 25 7 5.0786 0.4940 7.6575 26 6 6.1570 0.2352 8.4203 27 7 5.7076 -0.1165 9.6002 28 7 4.4203 -0.0753 9.5642 29 7 4.0371 0.2989 8.3935 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.6055 -1.7198 -1.2951 34 1 1.7517 -0.1583 -2.1369 35 1 3.9824 -0.4628 -0.4315 36 1 7.1913 -2.1959 -3.0891 37 1 2.4157 -2.7377 0.9717 38 1 1.6237 -2.2852 2.5002 39 1 0.6904 -2.3002 0.9846 40 1 3.5407 -2.6331 2.3034 41 1 4.9937 -1.6050 2.3034 42 1 4.5101 -2.4616 3.7865 43 1 4.5497 0.9268 3.6844 44 1 6.1100 0.9201 5.8819 45 1 4.6751 1.9298 6.1824 46 1 7.1918 0.3041 8.1187 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496207813.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:59 Heat of formation + Delta-G solvation = 87.422078 kcal Electronic energy + Delta-G solvation = -30393.592240 eV Core-core repulsion = 26165.058863 eV Total energy + Delta-G solvation = -4228.533378 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.47216 -40.89778 -39.74404 -36.93271 -35.94335 -35.30428 -34.37180 -32.81171 -32.55163 -31.19430 -30.41084 -29.01480 -27.15802 -26.08077 -24.91011 -24.15161 -23.72308 -22.33447 -21.47849 -20.77836 -19.46158 -18.53639 -18.22051 -17.68920 -17.22621 -16.91954 -16.41589 -16.12296 -15.96698 -15.61026 -15.25467 -14.71506 -14.39306 -14.28250 -14.10412 -13.76176 -13.53442 -13.10741 -13.01953 -12.77730 -12.66780 -12.59686 -12.48657 -12.43474 -12.25756 -12.02079 -11.89087 -11.61964 -11.52268 -11.43928 -11.04565 -10.94716 -10.76232 -10.67724 -10.37903 -10.24323 -9.92839 -9.69723 -9.56817 -9.01021 -8.64133 -7.33146 -5.86460 -3.21664 0.89398 1.40792 1.92631 1.99053 2.37099 2.49512 3.01128 3.22775 3.31110 3.33628 3.69396 3.86048 3.97873 4.20649 4.22273 4.43518 4.48833 4.79785 4.82194 4.89585 5.04457 5.07279 5.14947 5.31180 5.33971 5.38024 5.44158 5.46565 5.55261 5.66336 5.67526 5.71582 5.80665 5.89683 5.90631 6.05230 6.11039 6.21796 6.48698 6.64725 6.90413 7.27716 7.57838 7.89387 8.00245 8.31397 8.32645 9.11644 9.84054 10.04254 11.31970 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.014145 B = 0.003048 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.033001 B = 9183.714677 C =10501.414948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.122 3.878 3 H 0.102 0.898 4 C 0.148 3.852 5 N -0.751 5.751 6 C -0.243 4.243 7 H 0.091 0.909 8 C 0.007 3.993 9 N -0.932 5.932 10 Si 0.875 3.125 11 H -0.283 1.283 12 H -0.290 1.290 13 H -0.274 1.274 14 N -0.590 5.590 15 C 0.068 3.932 16 C 0.511 3.489 17 O -0.540 6.540 18 C 0.130 3.870 19 H 0.117 0.883 20 C -0.177 4.177 21 N -0.703 5.703 22 C 0.506 3.494 23 O -0.511 6.511 24 C 0.096 3.904 25 N -0.301 5.301 26 C 0.161 3.839 27 N -0.307 5.307 28 N -0.079 5.079 29 N -0.063 5.063 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.031 0.969 34 H 0.038 0.962 35 H 0.361 0.639 36 H 0.260 0.740 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.091 0.909 41 H 0.067 0.933 42 H 0.072 0.928 43 H 0.414 0.586 44 H 0.147 0.853 45 H 0.140 0.860 46 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.833 5.892 16.221 17.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.019 3.981 3 H 0.120 0.880 4 C 0.020 3.980 5 N -0.397 5.397 6 C -0.373 4.373 7 H 0.108 0.892 8 C -0.189 4.189 9 N -0.580 5.580 10 Si 0.705 3.295 11 H -0.210 1.210 12 H -0.217 1.217 13 H -0.200 1.200 14 N -0.322 5.322 15 C -0.075 4.075 16 C 0.297 3.703 17 O -0.417 6.417 18 C 0.022 3.978 19 H 0.134 0.866 20 C -0.235 4.235 21 N -0.357 5.357 22 C 0.289 3.711 23 O -0.385 6.385 24 C -0.029 4.029 25 N -0.103 5.103 26 C -0.137 4.137 27 N -0.154 5.154 28 N -0.073 5.073 29 N -0.049 5.049 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.049 0.951 34 H 0.056 0.944 35 H 0.194 0.806 36 H 0.070 0.930 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.109 0.891 41 H 0.086 0.914 42 H 0.091 0.909 43 H 0.251 0.749 44 H 0.165 0.835 45 H 0.157 0.843 46 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -6.058 5.422 17.231 19.053 hybrid contribution 1.811 0.945 -0.287 2.063 sum -4.247 6.366 16.945 18.593 Atomic orbital electron populations 1.22059 0.94548 1.02424 1.02415 1.21535 0.93879 0.98459 0.84233 0.88011 1.20995 0.85747 0.97539 0.93725 1.42625 1.01224 1.71236 1.24623 1.19048 0.89864 1.29099 0.99245 0.89161 1.24639 0.96158 1.00612 0.97524 1.69691 1.07338 1.48517 1.32483 0.86673 0.79989 0.79210 0.83645 1.21022 1.21660 1.20006 1.47654 1.49732 1.12563 1.22264 1.22074 1.02199 0.81733 1.01501 1.20404 0.78556 0.86913 0.84382 1.90686 1.57778 1.16754 1.76505 1.20808 0.95749 0.90067 0.91189 0.86560 1.22448 1.01234 0.96807 1.02994 1.45583 1.51668 1.31522 1.06955 1.20069 0.82316 0.86217 0.82538 1.90856 1.46511 1.30313 1.70817 1.21981 1.05298 1.00447 0.75221 1.48144 1.05136 1.44726 1.12265 1.27775 0.97086 1.01003 0.87859 1.75001 1.03732 1.18131 1.18541 1.78684 1.03763 1.14466 1.10366 1.79023 1.12417 1.14743 0.98759 0.90999 0.92025 0.92490 0.95097 0.94382 0.80555 0.93027 0.90733 0.91136 0.90424 0.89071 0.91365 0.90920 0.74875 0.83519 0.84263 0.74774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 9.17 37.16 0.34 -1.30 16 2 C 0.12 1.73 2.80 -67.93 -0.19 1.54 16 3 H 0.10 1.65 6.90 -51.93 -0.36 1.29 16 4 C 0.15 2.59 5.56 -4.04 -0.02 2.57 16 5 N -0.75 -16.86 5.24 -59.91 -0.31 -17.18 16 6 C -0.24 -6.58 10.47 -15.06 -0.16 -6.74 16 7 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 8 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 9 N -0.93 -28.51 13.97 55.49 0.78 -27.74 16 10 Si 0.87 21.23 27.73 -169.99 -4.71 16.51 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 13 H -0.27 -6.48 6.52 56.52 0.37 -6.11 16 14 N -0.59 -7.86 2.24 -173.93 -0.39 -8.25 16 15 C 0.07 0.71 7.96 59.85 0.48 1.19 16 16 C 0.51 7.20 6.85 -10.98 -0.08 7.13 16 17 O -0.54 -8.98 15.16 5.56 0.08 -8.90 16 18 C 0.13 1.51 2.18 -69.08 -0.15 1.36 16 19 H 0.12 1.29 6.84 -51.93 -0.36 0.93 16 20 C -0.18 -2.14 9.12 37.16 0.34 -1.80 16 21 N -0.70 -6.87 4.95 -54.93 -0.27 -7.14 16 22 C 0.51 4.80 7.81 -10.99 -0.09 4.71 16 23 O -0.51 -7.03 15.37 5.55 0.09 -6.94 16 24 C 0.10 0.49 6.96 -5.19 -0.04 0.45 16 25 N -0.30 -2.63 3.19 -63.73 -0.20 -2.83 16 26 C 0.16 1.21 12.79 -90.39 -1.16 0.05 16 27 N -0.31 -3.66 12.36 29.59 0.37 -3.29 16 28 N -0.08 -1.11 13.43 60.35 0.81 -0.30 16 29 N -0.06 -0.82 12.30 60.35 0.74 -0.07 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.57 6.66 -51.93 -0.35 0.23 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.03 0.53 7.84 -51.93 -0.41 0.12 16 34 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.36 8.20 4.93 -40.82 -0.20 8.00 16 36 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 37 H 0.07 0.90 6.95 -51.93 -0.36 0.54 16 38 H 0.07 0.59 6.01 -51.93 -0.31 0.28 16 39 H 0.08 0.69 6.43 -51.93 -0.33 0.36 16 40 H 0.09 1.04 4.53 -51.93 -0.24 0.81 16 41 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.41 3.60 7.79 -40.82 -0.32 3.28 16 44 H 0.15 0.08 8.08 -51.93 -0.42 -0.34 16 45 H 0.14 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.24 0.38 8.06 -52.49 -0.42 -0.05 16 LS Contribution 380.09 15.07 5.73 5.73 Total: -1.00 -39.48 380.09 -4.31 -43.79 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -6.20 Total: 7.36 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: -0.81 Total: 9.26 kcal Atomic # 7 Polarization: -68.32 SS G_CDS: 1.51 Total: -66.81 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: 0.17 Total: -15.84 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.71 Total: 16.51 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -39.48 -4.31 -43.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496207813.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.212 kcal (2) G-P(sol) polarization free energy of solvation -39.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds