Wall clock time and date at job start Tue Mar 31 2020 22:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 N 1.46504 * 109.47054 * 184.99999 * 4 2 1 6 6 C 1.36938 * 119.99997 * 180.02562 * 5 4 2 7 7 H 1.08000 * 119.99654 * 359.97438 * 6 5 4 8 8 C 1.38811 * 119.99791 * 180.02562 * 6 5 4 9 9 N 1.31622 * 119.99636 * 179.97438 * 8 6 5 10 10 Si 1.86793 * 120.00370 * 359.97438 * 8 6 5 11 11 H 1.48499 * 109.47330 * 89.99701 * 10 8 6 12 12 H 1.48503 * 109.47375 * 210.00124 * 10 8 6 13 13 H 1.48504 * 109.46903 * 330.00091 * 10 8 6 14 14 N 1.46499 * 109.46799 * 120.00100 * 2 1 3 15 15 C 1.46499 * 120.00271 * 60.00241 * 14 2 1 16 16 C 1.34783 * 119.99826 * 240.00088 * 14 2 1 17 17 O 1.21278 * 120.00109 * 359.97438 * 16 14 2 18 18 C 1.50703 * 120.00065 * 180.02562 * 16 14 2 19 19 H 1.08999 * 109.46819 * 299.99778 * 18 16 14 20 20 C 1.53001 * 109.46870 * 59.99777 * 18 16 14 21 21 N 1.46503 * 109.47153 * 179.97438 * 18 16 14 22 22 C 1.34771 * 119.99684 * 154.99584 * 21 18 16 23 23 O 1.21284 * 120.00471 * 0.02562 * 22 21 18 24 24 C 1.50700 * 119.99804 * 179.97438 * 22 21 18 25 25 N 1.46500 * 109.47089 * 180.02562 * 24 22 21 26 26 C 1.34605 * 126.43377 * 125.00569 * 25 24 22 27 27 N 1.31066 * 106.67867 * 180.02562 * 26 25 24 28 28 N 1.28842 * 107.98965 * 359.97438 * 27 26 25 29 29 N 1.28738 * 109.39978 * 359.73641 * 28 27 26 30 30 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 31 31 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 33 33 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 34 34 H 1.09002 * 109.46642 * 65.00413 * 4 2 1 35 35 H 0.97000 * 119.99700 * 0.02562 * 5 4 2 36 36 H 0.96997 * 119.99537 * 179.97438 * 9 8 6 37 37 H 1.08994 * 109.47057 * 89.99771 * 15 14 2 38 38 H 1.09006 * 109.46711 * 209.99932 * 15 14 2 39 39 H 1.08998 * 109.46853 * 329.99725 * 15 14 2 40 40 H 1.08992 * 109.47481 * 299.99849 * 20 18 16 41 41 H 1.08999 * 109.47399 * 60.00356 * 20 18 16 42 42 H 1.09000 * 109.46815 * 179.97438 * 20 18 16 43 43 H 0.97001 * 119.99743 * 335.00228 * 21 18 16 44 44 H 1.09000 * 109.47503 * 300.00584 * 24 22 21 45 45 H 1.09006 * 109.46567 * 60.00400 * 24 22 21 46 46 H 1.07999 * 126.66014 * 0.03842 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.1840 -1.4380 -2.2071 7 1 3.6469 -1.8432 -3.0519 8 6 5.5674 -1.5381 -2.1511 9 7 6.2246 -2.1264 -3.1280 10 14 6.4962 -0.8378 -0.6896 11 1 6.6267 -1.8805 0.3597 12 1 7.8473 -0.4014 -1.1246 13 1 5.7528 0.3253 -0.1418 14 7 2.0183 -0.6906 1.1962 15 6 1.6644 -2.0932 1.4280 16 6 2.7931 -0.0356 2.0834 17 8 3.0865 1.1254 1.8913 18 6 3.2959 -0.7462 3.3136 19 1 2.4483 -1.0891 3.9070 20 6 4.1461 -1.9479 2.8967 21 7 4.1102 0.1745 4.1109 22 6 4.2484 -0.0237 5.4368 23 8 3.6991 -0.9644 5.9699 24 6 5.0864 0.9230 6.2568 25 7 5.0786 0.4940 7.6575 26 6 6.1570 0.2352 8.4203 27 7 5.7076 -0.1165 9.6002 28 7 4.4203 -0.0753 9.5642 29 7 4.0371 0.2989 8.3935 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.6055 -1.7198 -1.2951 34 1 1.7517 -0.1583 -2.1369 35 1 3.9824 -0.4628 -0.4315 36 1 7.1913 -2.1959 -3.0891 37 1 2.4157 -2.7377 0.9717 38 1 1.6237 -2.2852 2.5002 39 1 0.6904 -2.3002 0.9846 40 1 3.5407 -2.6331 2.3034 41 1 4.9937 -1.6050 2.3034 42 1 4.5101 -2.4616 3.7865 43 1 4.5497 0.9268 3.6844 44 1 6.1100 0.9201 5.8819 45 1 4.6751 1.9298 6.1824 46 1 7.1918 0.3041 8.1187 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496207813.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:58 Heat of formation + Delta-G solvation = 55.814285 kcal Electronic energy + Delta-G solvation = -30394.962857 eV Core-core repulsion = 26165.058863 eV Total energy + Delta-G solvation = -4229.903994 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.18820 -41.84141 -40.64479 -38.13267 -36.70857 -36.20242 -35.96971 -33.97349 -33.48409 -32.74785 -31.48728 -29.69485 -28.08591 -27.61050 -25.87358 -24.88373 -24.52313 -24.00568 -22.53209 -21.65828 -20.61985 -19.56119 -19.33770 -18.82422 -18.13576 -17.74791 -17.23100 -16.94769 -16.81112 -16.67958 -16.44718 -16.10970 -15.82988 -15.21437 -15.01934 -14.85834 -14.62592 -14.41865 -14.17454 -13.90039 -13.80292 -13.68121 -13.50765 -13.49073 -13.19373 -13.11526 -12.98044 -12.74415 -12.57302 -12.41212 -12.24367 -12.21821 -12.16399 -11.87434 -11.75797 -11.52252 -11.13739 -11.04456 -10.92880 -10.43914 -9.71885 -9.31089 -8.04782 -5.36974 0.23734 0.88806 1.23775 1.24816 1.28774 1.34680 1.37549 1.41976 1.65226 2.12862 2.44168 3.15344 3.22329 3.26754 3.45740 3.51344 3.60584 3.87281 3.89508 3.97276 3.99000 3.99651 4.20615 4.23773 4.36471 4.37329 4.48748 4.59569 4.64673 4.68801 4.76702 4.81074 4.88919 4.95065 5.04696 5.09906 5.14255 5.16921 5.30727 5.50452 5.74431 6.19028 6.20157 6.25164 6.87112 6.94828 7.05552 7.55981 7.82394 8.00525 9.16794 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.014145 B = 0.003048 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.033001 B = 9183.714677 C =10501.414948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.129 3.871 3 H 0.081 0.919 4 C 0.143 3.857 5 N -0.753 5.753 6 C -0.227 4.227 7 H 0.061 0.939 8 C -0.061 4.061 9 N -0.982 5.982 10 Si 0.944 3.056 11 H -0.266 1.266 12 H -0.297 1.297 13 H -0.265 1.265 14 N -0.593 5.593 15 C 0.062 3.938 16 C 0.505 3.495 17 O -0.569 6.569 18 C 0.137 3.863 19 H 0.123 0.877 20 C -0.171 4.171 21 N -0.699 5.699 22 C 0.506 3.494 23 O -0.558 6.558 24 C 0.096 3.904 25 N -0.299 5.299 26 C 0.185 3.815 27 N -0.346 5.346 28 N -0.118 5.118 29 N -0.095 5.095 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.042 0.958 34 H 0.036 0.964 35 H 0.362 0.638 36 H 0.257 0.743 37 H 0.059 0.941 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.047 0.953 42 H 0.077 0.923 43 H 0.421 0.579 44 H 0.203 0.797 45 H 0.169 0.831 46 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.581 6.913 17.560 19.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.025 3.975 3 H 0.099 0.901 4 C 0.017 3.983 5 N -0.399 5.399 6 C -0.358 4.358 7 H 0.079 0.921 8 C -0.253 4.253 9 N -0.633 5.633 10 Si 0.772 3.228 11 H -0.192 1.192 12 H -0.224 1.224 13 H -0.191 1.191 14 N -0.324 5.324 15 C -0.079 4.079 16 C 0.292 3.708 17 O -0.449 6.449 18 C 0.028 3.972 19 H 0.140 0.860 20 C -0.229 4.229 21 N -0.354 5.354 22 C 0.291 3.709 23 O -0.435 6.435 24 C -0.028 4.028 25 N -0.101 5.101 26 C -0.113 4.113 27 N -0.194 5.194 28 N -0.112 5.112 29 N -0.083 5.083 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.195 0.805 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.112 0.888 39 H 0.116 0.884 40 H 0.113 0.887 41 H 0.066 0.934 42 H 0.096 0.904 43 H 0.259 0.741 44 H 0.220 0.780 45 H 0.186 0.814 46 H 0.309 0.691 Dipole moment (debyes) X Y Z Total from point charges -5.858 6.458 18.577 20.521 hybrid contribution 1.674 0.621 -0.855 1.980 sum -4.184 7.079 17.722 19.537 Atomic orbital electron populations 1.21991 0.91284 1.03800 1.03334 1.21371 0.96228 0.96758 0.83095 0.90073 1.21213 0.82948 0.98508 0.95665 1.42632 1.03237 1.70637 1.23357 1.19037 0.90032 1.27670 0.99088 0.92130 1.25408 0.97290 1.01927 1.00628 1.69870 1.07422 1.50941 1.35034 0.85569 0.77893 0.78979 0.80374 1.19206 1.22385 1.19052 1.47786 1.49389 1.13546 1.21674 1.22255 1.02649 0.79807 1.03212 1.20845 0.78154 0.86715 0.85036 1.90665 1.58847 1.18040 1.77332 1.20669 0.96154 0.89982 0.90367 0.85966 1.22393 1.00559 0.97057 1.02883 1.45576 1.51312 1.31340 1.07179 1.20775 0.81807 0.86087 0.82242 1.90848 1.48565 1.32588 1.71526 1.22478 1.07754 0.99932 0.72613 1.48379 1.04574 1.43988 1.13184 1.28796 0.98685 0.97555 0.86217 1.74896 1.03200 1.20025 1.21251 1.78646 1.05101 1.16026 1.11408 1.78930 1.14441 1.15808 0.99072 0.90070 0.90405 0.91613 0.93996 0.94609 0.80511 0.93395 0.92300 0.88830 0.88417 0.88705 0.93378 0.90428 0.74070 0.77983 0.81366 0.69071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.17 71.98 0.66 -1.99 16 2 C 0.13 3.44 2.80 44.99 0.13 3.56 16 3 H 0.08 2.54 6.90 -2.39 -0.02 2.52 16 4 C 0.14 4.86 5.56 86.38 0.48 5.34 16 5 N -0.75 -33.32 5.24 -343.45 -1.80 -35.12 16 6 C -0.23 -12.44 10.47 84.03 0.88 -11.56 16 7 H 0.06 3.62 8.06 -2.91 -0.02 3.60 16 8 C -0.06 -3.49 5.50 84.86 0.47 -3.02 16 9 N -0.98 -61.33 13.97 21.65 0.30 -61.03 16 10 Si 0.94 43.94 27.73 68.60 1.90 45.85 16 11 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 12 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 13 H -0.27 -11.78 6.52 99.48 0.65 -11.14 16 14 N -0.59 -14.65 2.24 -822.58 -1.85 -16.50 16 15 C 0.06 1.18 7.96 127.77 1.02 2.19 16 16 C 0.50 13.33 6.85 87.66 0.60 13.93 16 17 O -0.57 -18.07 15.16 -3.02 -0.05 -18.11 16 18 C 0.14 2.91 2.18 44.25 0.10 3.00 16 19 H 0.12 2.48 6.84 -2.39 -0.02 2.46 16 20 C -0.17 -3.81 9.12 71.98 0.66 -3.16 16 21 N -0.70 -11.90 4.95 -446.09 -2.21 -14.11 16 22 C 0.51 8.27 7.81 87.66 0.68 8.96 16 23 O -0.56 -14.58 15.37 -3.04 -0.05 -14.62 16 24 C 0.10 0.57 6.96 85.63 0.60 1.17 16 25 N -0.30 -4.39 3.19 -355.56 -1.13 -5.52 16 26 C 0.19 2.16 12.79 180.27 2.31 4.47 16 27 N -0.35 -7.87 12.36 -60.29 -0.74 -8.61 16 28 N -0.12 -3.33 13.43 37.01 0.50 -2.84 16 29 N -0.10 -2.40 12.30 37.02 0.46 -1.94 16 30 H 0.08 1.34 8.14 -2.39 -0.02 1.33 16 31 H 0.08 1.18 6.66 -2.39 -0.02 1.16 16 32 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.04 1.36 7.84 -2.39 -0.02 1.34 16 34 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.36 15.97 4.93 -92.71 -0.46 15.51 16 36 H 0.26 15.34 8.31 -92.71 -0.77 14.56 16 37 H 0.06 1.33 6.95 -2.39 -0.02 1.31 16 38 H 0.09 1.33 6.01 -2.38 -0.01 1.32 16 39 H 0.10 1.44 6.43 -2.39 -0.02 1.42 16 40 H 0.09 2.01 4.53 -2.39 -0.01 2.00 16 41 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.42 6.10 7.79 -92.71 -0.72 5.38 16 44 H 0.20 -1.07 8.08 -2.39 -0.02 -1.09 16 45 H 0.17 0.12 8.14 -2.38 -0.02 0.10 16 46 H 0.29 -0.74 8.06 -2.91 -0.02 -0.76 16 Total: -1.00 -91.36 380.09 3.71 -87.65 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: -0.19 Total: 22.01 kcal Atomic # 6 Polarization: 14.32 SS G_CDS: 8.57 Total: 22.89 kcal Atomic # 7 Polarization: -139.18 SS G_CDS: -6.48 Total: -145.66 kcal Atomic # 8 Polarization: -32.64 SS G_CDS: -0.09 Total: -32.74 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.90 Total: 45.85 kcal Total: -91.36 3.71 -87.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496207813.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.467 kcal (2) G-P(sol) polarization free energy of solvation -91.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds