Wall clock time and date at job start Tue Mar 31 2020 22:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47696 * 2 1 4 4 N 1.46500 * 109.47244 * 120.00310 * 2 1 3 5 5 C 1.34779 * 119.99898 * 274.99791 * 4 2 1 6 6 O 1.21275 * 119.99879 * 359.97438 * 5 4 2 7 7 C 1.50703 * 119.99747 * 179.97438 * 5 4 2 8 8 N 1.46500 * 109.46763 * 180.02562 * 7 5 4 9 9 C 1.34603 * 126.43882 * 124.99681 * 8 7 5 10 10 N 1.31067 * 106.67820 * 179.97438 * 9 8 7 11 11 N 1.28846 * 107.99542 * 0.02562 * 10 9 8 12 12 N 1.28743 * 109.39265 * 359.73117 * 11 10 9 13 13 C 1.50703 * 109.46985 * 239.99812 * 2 1 3 14 14 O 1.21279 * 120.00049 * 240.00315 * 13 2 1 15 15 N 1.34779 * 119.99541 * 60.00319 * 13 2 1 16 16 C 1.46499 * 120.00212 * 359.97438 * 15 13 2 17 17 C 1.46502 * 119.99726 * 179.97438 * 15 13 2 18 18 H 1.09000 * 109.47396 * 0.02562 * 17 15 13 19 19 C 1.53008 * 109.47134 * 119.99799 * 17 15 13 20 20 C 1.52995 * 109.47349 * 239.99897 * 17 15 13 21 21 N 1.46500 * 109.46913 * 54.99978 * 20 17 15 22 22 C 1.36942 * 119.99935 * 180.02562 * 21 20 17 23 23 H 1.07993 * 119.99995 * 0.02562 * 22 21 20 24 24 C 1.38811 * 119.99801 * 180.02562 * 22 21 20 25 25 N 1.31615 * 120.00458 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99848 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47390 * 59.99901 * 26 24 22 28 28 H 1.48496 * 109.47225 * 179.97438 * 26 24 22 29 29 H 1.48503 * 109.46752 * 299.99931 * 26 24 22 30 30 H 1.08991 * 109.46868 * 59.99326 * 1 2 3 31 31 H 1.08994 * 109.47151 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46607 * 299.99997 * 1 2 3 33 33 H 0.97001 * 120.00435 * 94.98975 * 4 2 1 34 34 H 1.08998 * 109.47004 * 299.99834 * 7 5 4 35 35 H 1.08990 * 109.47401 * 59.99987 * 7 5 4 36 36 H 1.07998 * 126.66074 * 0.03647 * 9 8 7 37 37 H 1.09002 * 109.47391 * 270.00122 * 16 15 13 38 38 H 1.09001 * 109.46813 * 150.00179 * 16 15 13 39 39 H 1.09004 * 109.47041 * 30.00306 * 16 15 13 40 40 H 1.09003 * 109.46815 * 59.99801 * 19 17 15 41 41 H 1.09000 * 109.46982 * 179.97438 * 19 17 15 42 42 H 1.09002 * 109.47164 * 300.00444 * 19 17 15 43 43 H 1.08995 * 109.47154 * 174.99963 * 20 17 15 44 44 H 1.09000 * 109.47200 * 295.00353 * 20 17 15 45 45 H 0.96997 * 120.00014 * 359.97438 * 21 20 17 46 46 H 0.96996 * 120.00823 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1472 -0.0183 2.3571 6 8 1.8592 1.1585 2.4115 7 6 2.6490 -0.7290 3.5877 8 7 2.6978 0.2122 4.7093 9 6 2.1033 0.0600 5.9072 10 7 2.3991 1.1247 6.6120 11 7 3.1364 1.8913 5.8848 12 7 3.3232 1.3404 4.7362 13 6 2.0323 -0.7105 -1.2305 14 8 2.7295 -1.6966 -1.1192 15 7 1.7067 -0.2499 -2.4546 16 6 0.8641 0.9409 -2.5889 17 6 2.1955 -0.9402 -3.6508 18 1 2.8009 -1.7967 -3.3542 19 6 1.0057 -1.4214 -4.4838 20 6 3.0452 0.0218 -4.4834 21 7 4.1155 0.5745 -3.6496 22 6 5.0078 1.4660 -4.1830 23 1 4.9222 1.7619 -5.2181 24 6 6.0222 1.9894 -3.3931 25 7 6.1263 1.6292 -2.1315 26 14 7.2389 3.2060 -4.1205 27 1 6.5095 4.4041 -4.6080 28 1 8.2159 3.6119 -3.0785 29 1 7.9581 2.5695 -5.2531 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3632 0.5138 0.8900 33 1 2.2490 -1.6319 1.1526 34 1 1.9760 -1.5507 3.8325 35 1 3.6480 -1.1215 3.3986 36 1 1.5005 -0.7774 6.2261 37 1 -0.1838 0.6427 -2.6224 38 1 1.1218 1.4665 -3.5084 39 1 1.0273 1.5997 -1.7359 40 1 0.3998 -0.5652 -4.7804 41 1 1.3694 -1.9346 -5.3740 42 1 0.4003 -2.1068 -3.8906 43 1 3.4813 -0.5148 -5.3259 44 1 2.4181 0.8325 -4.8543 45 1 4.1917 0.3096 -2.7197 46 1 6.8349 1.9951 -1.5794 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496207824.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:02 Heat of formation + Delta-G solvation = 85.018575 kcal Electronic energy + Delta-G solvation = -30250.717882 eV Core-core repulsion = 26022.080281 eV Total energy + Delta-G solvation = -4228.637601 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.30230 -40.68093 -39.52357 -36.72011 -35.76115 -35.11522 -34.14068 -32.65157 -32.41050 -30.91150 -30.03087 -28.89182 -26.97161 -25.72006 -24.77917 -23.98154 -23.56500 -22.62475 -21.34041 -20.60880 -19.19003 -18.34915 -18.04359 -17.14784 -17.01514 -16.72287 -16.24396 -15.96054 -15.78241 -15.41423 -15.16182 -14.66387 -14.25139 -14.04442 -13.67137 -13.61990 -13.36759 -13.30155 -12.84662 -12.62020 -12.57870 -12.36523 -12.28791 -12.23901 -12.19916 -11.81595 -11.57819 -11.49277 -11.35087 -11.26767 -10.86255 -10.78460 -10.58595 -10.55485 -10.18144 -10.10069 -9.73367 -9.71363 -9.36095 -8.89019 -8.45055 -6.93755 -5.75541 -3.05633 1.07198 1.58359 2.13611 2.15386 2.61645 2.71526 3.21827 3.43962 3.48248 3.50576 3.84245 3.97831 4.14838 4.39214 4.42726 4.58738 4.60759 4.88424 5.02407 5.12099 5.19649 5.23482 5.30434 5.38258 5.46923 5.51014 5.53136 5.57419 5.64245 5.76146 5.83703 5.89157 5.97645 5.99365 6.06878 6.10785 6.27147 6.41287 6.62627 6.82396 7.10776 7.49601 7.67792 7.80524 8.24303 8.41706 8.48842 9.53404 10.10192 10.45081 11.46356 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.009839 B = 0.003304 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2845.182910 B = 8472.575638 C =10662.816360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.128 3.872 3 H 0.120 0.880 4 N -0.700 5.700 5 C 0.506 3.494 6 O -0.508 6.508 7 C 0.097 3.903 8 N -0.300 5.300 9 C 0.156 3.844 10 N -0.309 5.309 11 N -0.079 5.079 12 N -0.055 5.055 13 C 0.519 3.481 14 O -0.539 6.539 15 N -0.588 5.588 16 C 0.074 3.926 17 C 0.126 3.874 18 H 0.101 0.899 19 C -0.154 4.154 20 C 0.143 3.857 21 N -0.728 5.728 22 C -0.246 4.246 23 H 0.069 0.931 24 C -0.010 4.010 25 N -0.928 5.928 26 Si 0.906 3.094 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 H 0.086 0.914 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.411 0.589 34 H 0.145 0.855 35 H 0.141 0.859 36 H 0.235 0.765 37 H 0.056 0.944 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.058 0.942 41 H 0.068 0.932 42 H 0.054 0.946 43 H 0.029 0.971 44 H 0.021 0.979 45 H 0.385 0.615 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.756 -11.516 7.756 21.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.020 3.980 3 H 0.138 0.862 4 N -0.355 5.355 5 C 0.288 3.712 6 O -0.382 6.382 7 C -0.029 4.029 8 N -0.102 5.102 9 C -0.142 4.142 10 N -0.156 5.156 11 N -0.074 5.074 12 N -0.042 5.042 13 C 0.305 3.695 14 O -0.416 6.416 15 N -0.320 5.320 16 C -0.069 4.069 17 C 0.023 3.977 18 H 0.119 0.881 19 C -0.213 4.213 20 C 0.014 3.986 21 N -0.372 5.372 22 C -0.377 4.377 23 H 0.087 0.913 24 C -0.206 4.206 25 N -0.576 5.576 26 Si 0.737 3.263 27 H -0.213 1.213 28 H -0.216 1.216 29 H -0.213 1.213 30 H 0.104 0.896 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.249 0.751 34 H 0.162 0.838 35 H 0.158 0.842 36 H 0.251 0.749 37 H 0.074 0.926 38 H 0.100 0.900 39 H 0.091 0.909 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.073 0.927 43 H 0.047 0.953 44 H 0.039 0.961 45 H 0.219 0.781 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -15.887 -9.795 7.961 20.291 hybrid contribution 0.488 -0.740 -0.518 1.027 sum -15.399 -10.535 7.443 20.088 Atomic orbital electron populations 1.22373 0.92893 1.03101 1.04360 1.20780 0.95354 0.98679 0.83155 0.86195 1.45475 1.67038 1.14810 1.08134 1.20042 0.79062 0.87662 0.84416 1.90865 1.48185 1.14783 1.84318 1.21971 1.07570 0.90020 0.83317 1.48174 1.33583 1.15523 1.12922 1.27709 1.01413 1.02017 0.83104 1.74977 1.13050 1.01446 1.26124 1.78714 1.12212 1.20665 0.95766 1.79136 1.14253 0.93732 1.17046 1.20278 0.80057 0.84541 0.84595 1.90677 1.37821 1.27008 1.86077 1.47546 1.50486 1.28647 1.05290 1.21965 0.93203 0.87320 1.04412 1.21448 0.95135 0.96626 0.84528 0.88098 1.22051 0.98003 1.01228 0.99988 1.21009 0.90165 0.94049 0.93360 1.42270 1.31361 1.52405 1.11199 1.19134 1.05905 1.17371 0.95269 0.91333 1.24743 0.99331 1.00686 0.95865 1.69649 1.34870 1.47251 1.05822 0.86294 0.81098 0.81126 0.77781 1.21277 1.21646 1.21297 0.89588 0.91916 0.91139 0.75138 0.83767 0.84171 0.74924 0.92573 0.89996 0.90880 0.92302 0.91301 0.92658 0.95327 0.96109 0.78088 0.93405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.58 9.12 37.16 0.34 -1.24 16 2 C 0.13 1.64 2.18 -69.08 -0.15 1.49 16 3 H 0.12 1.86 6.84 -51.93 -0.36 1.50 16 4 N -0.70 -7.60 4.95 -54.93 -0.27 -7.87 16 5 C 0.51 5.73 7.81 -10.98 -0.09 5.65 16 6 O -0.51 -8.23 15.37 5.56 0.09 -8.14 16 7 C 0.10 0.64 6.97 -5.19 -0.04 0.60 16 8 N -0.30 -3.13 3.19 -63.74 -0.20 -3.34 16 9 C 0.16 1.33 12.79 -90.39 -1.16 0.17 16 10 N -0.31 -4.08 12.36 29.59 0.37 -3.72 16 11 N -0.08 -1.29 13.43 60.35 0.81 -0.48 16 12 N -0.06 -0.86 12.30 60.35 0.74 -0.12 16 13 C 0.52 8.00 6.85 -10.98 -0.08 7.92 16 14 O -0.54 -9.74 15.16 5.56 0.08 -9.65 16 15 N -0.59 -8.57 2.24 -173.93 -0.39 -8.96 16 16 C 0.07 0.88 7.86 59.85 0.47 1.35 16 17 C 0.13 1.94 2.80 -67.93 -0.19 1.75 16 18 H 0.10 1.79 6.90 -51.93 -0.36 1.43 16 19 C -0.15 -1.72 9.19 37.16 0.34 -1.38 16 20 C 0.14 2.72 5.50 -4.04 -0.02 2.70 16 21 N -0.73 -18.22 5.43 -59.91 -0.33 -18.55 16 22 C -0.25 -6.85 9.99 -15.06 -0.15 -7.00 16 23 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 24 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 25 N -0.93 -28.57 13.06 55.49 0.72 -27.84 16 26 Si 0.91 22.70 29.55 -169.99 -5.02 17.67 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 28 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 29 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 30 H 0.09 0.72 4.53 -51.93 -0.24 0.48 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.41 3.70 7.79 -40.82 -0.32 3.38 16 34 H 0.14 0.12 8.08 -51.93 -0.42 -0.30 16 35 H 0.14 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.23 0.47 8.06 -52.49 -0.42 0.05 16 37 H 0.06 0.48 6.95 -51.93 -0.36 0.12 16 38 H 0.08 1.06 6.53 -51.93 -0.34 0.72 16 39 H 0.07 0.87 6.01 -51.93 -0.31 0.56 16 40 H 0.06 0.59 7.67 -51.93 -0.40 0.19 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.02 0.39 6.88 -51.93 -0.36 0.03 16 45 H 0.39 10.46 7.06 -40.82 -0.29 10.17 16 46 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 383.22 15.07 5.78 5.78 Total: -1.00 -40.81 383.22 -4.69 -45.49 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -6.25 Total: 8.10 kcal Atomic # 6 Polarization: 12.43 SS G_CDS: -0.81 Total: 11.62 kcal Atomic # 7 Polarization: -72.32 SS G_CDS: 1.45 Total: -70.86 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: 0.17 Total: -17.79 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -40.81 -4.69 -45.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496207824.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.513 kcal (2) G-P(sol) polarization free energy of solvation -40.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds