Wall clock time and date at job start Tue Mar 31 2020 22:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47696 * 2 1 4 4 N 1.46500 * 109.47244 * 120.00310 * 2 1 3 5 5 C 1.34779 * 119.99898 * 274.99791 * 4 2 1 6 6 O 1.21275 * 119.99879 * 359.97438 * 5 4 2 7 7 C 1.50703 * 119.99747 * 179.97438 * 5 4 2 8 8 N 1.46500 * 109.46763 * 180.02562 * 7 5 4 9 9 C 1.34603 * 126.43882 * 124.99681 * 8 7 5 10 10 N 1.31067 * 106.67820 * 179.97438 * 9 8 7 11 11 N 1.28846 * 107.99542 * 0.02562 * 10 9 8 12 12 N 1.28743 * 109.39265 * 359.73117 * 11 10 9 13 13 C 1.50703 * 109.46985 * 239.99812 * 2 1 3 14 14 O 1.21279 * 120.00049 * 240.00315 * 13 2 1 15 15 N 1.34779 * 119.99541 * 60.00319 * 13 2 1 16 16 C 1.46499 * 120.00212 * 359.97438 * 15 13 2 17 17 C 1.46502 * 119.99726 * 179.97438 * 15 13 2 18 18 H 1.09000 * 109.47396 * 0.02562 * 17 15 13 19 19 C 1.53008 * 109.47134 * 119.99799 * 17 15 13 20 20 C 1.52995 * 109.47349 * 239.99897 * 17 15 13 21 21 N 1.46500 * 109.46913 * 54.99978 * 20 17 15 22 22 C 1.36942 * 119.99935 * 180.02562 * 21 20 17 23 23 H 1.07993 * 119.99995 * 0.02562 * 22 21 20 24 24 C 1.38811 * 119.99801 * 180.02562 * 22 21 20 25 25 N 1.31615 * 120.00458 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99848 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47390 * 59.99901 * 26 24 22 28 28 H 1.48496 * 109.47225 * 179.97438 * 26 24 22 29 29 H 1.48503 * 109.46752 * 299.99931 * 26 24 22 30 30 H 1.08991 * 109.46868 * 59.99326 * 1 2 3 31 31 H 1.08994 * 109.47151 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46607 * 299.99997 * 1 2 3 33 33 H 0.97001 * 120.00435 * 94.98975 * 4 2 1 34 34 H 1.08998 * 109.47004 * 299.99834 * 7 5 4 35 35 H 1.08990 * 109.47401 * 59.99987 * 7 5 4 36 36 H 1.07998 * 126.66074 * 0.03647 * 9 8 7 37 37 H 1.09002 * 109.47391 * 270.00122 * 16 15 13 38 38 H 1.09001 * 109.46813 * 150.00179 * 16 15 13 39 39 H 1.09004 * 109.47041 * 30.00306 * 16 15 13 40 40 H 1.09003 * 109.46815 * 59.99801 * 19 17 15 41 41 H 1.09000 * 109.46982 * 179.97438 * 19 17 15 42 42 H 1.09002 * 109.47164 * 300.00444 * 19 17 15 43 43 H 1.08995 * 109.47154 * 174.99963 * 20 17 15 44 44 H 1.09000 * 109.47200 * 295.00353 * 20 17 15 45 45 H 0.96997 * 120.00014 * 359.97438 * 21 20 17 46 46 H 0.96996 * 120.00823 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1472 -0.0183 2.3571 6 8 1.8592 1.1585 2.4115 7 6 2.6490 -0.7290 3.5877 8 7 2.6978 0.2122 4.7093 9 6 2.1033 0.0600 5.9072 10 7 2.3991 1.1247 6.6120 11 7 3.1364 1.8913 5.8848 12 7 3.3232 1.3404 4.7362 13 6 2.0323 -0.7105 -1.2305 14 8 2.7295 -1.6966 -1.1192 15 7 1.7067 -0.2499 -2.4546 16 6 0.8641 0.9409 -2.5889 17 6 2.1955 -0.9402 -3.6508 18 1 2.8009 -1.7967 -3.3542 19 6 1.0057 -1.4214 -4.4838 20 6 3.0452 0.0218 -4.4834 21 7 4.1155 0.5745 -3.6496 22 6 5.0078 1.4660 -4.1830 23 1 4.9222 1.7619 -5.2181 24 6 6.0222 1.9894 -3.3931 25 7 6.1263 1.6292 -2.1315 26 14 7.2389 3.2060 -4.1205 27 1 6.5095 4.4041 -4.6080 28 1 8.2159 3.6119 -3.0785 29 1 7.9581 2.5695 -5.2531 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3632 0.5138 0.8900 33 1 2.2490 -1.6319 1.1526 34 1 1.9760 -1.5507 3.8325 35 1 3.6480 -1.1215 3.3986 36 1 1.5005 -0.7774 6.2261 37 1 -0.1838 0.6427 -2.6224 38 1 1.1218 1.4665 -3.5084 39 1 1.0273 1.5997 -1.7359 40 1 0.3998 -0.5652 -4.7804 41 1 1.3694 -1.9346 -5.3740 42 1 0.4003 -2.1068 -3.8906 43 1 3.4813 -0.5148 -5.3259 44 1 2.4181 0.8325 -4.8543 45 1 4.1917 0.3096 -2.7197 46 1 6.8349 1.9951 -1.5794 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496207824.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:01 Heat of formation + Delta-G solvation = 51.672392 kcal Electronic energy + Delta-G solvation = -30252.163881 eV Core-core repulsion = 26022.080281 eV Total energy + Delta-G solvation = -4230.083600 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.17178 -41.74497 -40.57399 -38.02420 -36.65626 -36.14817 -35.86434 -33.88619 -33.46241 -32.34882 -31.34391 -29.64863 -28.01595 -27.40095 -25.75377 -24.86934 -24.61998 -24.26654 -22.45782 -21.62089 -20.37044 -19.32518 -19.12146 -18.79055 -18.07238 -17.70600 -17.19482 -16.92144 -16.75505 -16.64404 -16.41254 -16.13979 -15.37773 -15.27903 -15.14351 -14.85391 -14.51226 -14.29641 -13.97627 -13.74210 -13.67555 -13.52620 -13.42899 -13.26727 -13.15061 -13.07780 -12.79846 -12.76170 -12.55713 -12.40061 -12.21693 -12.20207 -12.14128 -11.82120 -11.74928 -11.50902 -11.10869 -10.99086 -10.85408 -10.35085 -9.62101 -9.01999 -7.96974 -5.26027 0.26821 0.92825 1.25710 1.28765 1.43082 1.45894 1.52343 1.52535 1.72947 2.21542 2.52913 3.21523 3.30861 3.36932 3.47995 3.54994 3.85103 3.97716 3.99969 4.00522 4.07973 4.10158 4.22001 4.32082 4.37906 4.47061 4.56327 4.70786 4.71411 4.76473 4.78864 4.86123 4.93584 4.98373 5.13286 5.16281 5.18539 5.21219 5.33471 5.45474 5.60031 6.22645 6.27697 6.34511 6.96528 7.06191 7.30182 7.57914 8.07523 8.29049 9.25445 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.009839 B = 0.003304 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2845.182910 B = 8472.575638 C =10662.816360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.132 3.868 3 H 0.085 0.915 4 N -0.694 5.694 5 C 0.500 3.500 6 O -0.564 6.564 7 C 0.098 3.902 8 N -0.299 5.299 9 C 0.188 3.812 10 N -0.347 5.347 11 N -0.119 5.119 12 N -0.104 5.104 13 C 0.511 3.489 14 O -0.572 6.572 15 N -0.589 5.589 16 C 0.070 3.930 17 C 0.131 3.869 18 H 0.074 0.926 19 C -0.141 4.141 20 C 0.138 3.862 21 N -0.742 5.742 22 C -0.243 4.243 23 H 0.079 0.921 24 C -0.075 4.075 25 N -0.968 5.968 26 Si 0.971 3.029 27 H -0.276 1.276 28 H -0.301 1.301 29 H -0.276 1.276 30 H 0.097 0.903 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.422 0.578 34 H 0.216 0.784 35 H 0.158 0.842 36 H 0.302 0.698 37 H 0.100 0.900 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.069 0.931 43 H 0.031 0.969 44 H 0.036 0.964 45 H 0.371 0.629 46 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.205 -13.552 7.020 24.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.023 3.977 3 H 0.103 0.897 4 N -0.349 5.349 5 C 0.285 3.715 6 O -0.442 6.442 7 C -0.025 4.025 8 N -0.101 5.101 9 C -0.110 4.110 10 N -0.194 5.194 11 N -0.114 5.114 12 N -0.091 5.091 13 C 0.299 3.701 14 O -0.452 6.452 15 N -0.320 5.320 16 C -0.072 4.072 17 C 0.028 3.972 18 H 0.092 0.908 19 C -0.199 4.199 20 C 0.011 3.989 21 N -0.384 5.384 22 C -0.375 4.375 23 H 0.096 0.904 24 C -0.267 4.267 25 N -0.619 5.619 26 Si 0.800 3.200 27 H -0.202 1.202 28 H -0.227 1.227 29 H -0.202 1.202 30 H 0.116 0.884 31 H 0.100 0.900 32 H 0.086 0.914 33 H 0.261 0.739 34 H 0.232 0.768 35 H 0.176 0.824 36 H 0.316 0.684 37 H 0.118 0.882 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.088 0.912 43 H 0.049 0.951 44 H 0.054 0.946 45 H 0.202 0.798 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -18.378 -11.860 7.148 23.011 hybrid contribution 1.178 -0.215 -0.392 1.260 sum -17.201 -12.075 6.757 22.075 Atomic orbital electron populations 1.22288 0.89823 1.04395 1.04793 1.20672 0.97634 0.96489 0.82865 0.89673 1.45476 1.66632 1.15182 1.07590 1.20876 0.77836 0.87163 0.85576 1.90850 1.50715 1.17324 1.85290 1.22481 1.10112 0.89744 0.80180 1.48408 1.32765 1.14639 1.14331 1.28868 0.99011 1.01709 0.81368 1.74861 1.14073 1.03126 1.27351 1.78669 1.13857 1.22335 0.96508 1.79051 1.16438 0.96210 1.17390 1.20751 0.79548 0.84312 0.85502 1.90648 1.39267 1.28663 1.86662 1.47669 1.50350 1.29148 1.04881 1.22166 0.95085 0.86338 1.03610 1.21318 0.96310 0.94668 0.84927 0.90819 1.21962 0.96182 1.02169 0.99635 1.21260 0.89315 0.95046 0.93281 1.42493 1.32528 1.52243 1.11157 1.19592 1.05713 1.16662 0.95539 0.90360 1.25555 1.01688 1.03197 0.96298 1.69834 1.35614 1.49136 1.07288 0.85253 0.78701 0.79217 0.76845 1.20167 1.22736 1.20219 0.88449 0.90039 0.91375 0.73889 0.76759 0.82404 0.68359 0.88185 0.90952 0.91535 0.90557 0.90292 0.91190 0.95118 0.94574 0.79772 0.94396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.64 9.12 71.98 0.66 -1.99 16 2 C 0.13 3.40 2.18 44.25 0.10 3.49 16 3 H 0.09 2.82 6.84 -2.39 -0.02 2.81 16 4 N -0.69 -14.67 4.95 -446.09 -2.21 -16.88 16 5 C 0.50 11.05 7.81 87.66 0.68 11.74 16 6 O -0.56 -18.91 15.37 -3.02 -0.05 -18.95 16 7 C 0.10 1.02 6.97 85.63 0.60 1.61 16 8 N -0.30 -5.78 3.19 -355.57 -1.13 -6.91 16 9 C 0.19 2.66 12.79 180.27 2.31 4.96 16 10 N -0.35 -9.01 12.36 -60.30 -0.74 -9.75 16 11 N -0.12 -4.02 13.43 37.01 0.50 -3.53 16 12 N -0.10 -3.32 12.30 37.02 0.46 -2.87 16 13 C 0.51 15.81 6.85 87.66 0.60 16.41 16 14 O -0.57 -21.03 15.16 -3.02 -0.05 -21.07 16 15 N -0.59 -16.76 2.24 -822.57 -1.85 -18.61 16 16 C 0.07 1.55 7.86 127.77 1.00 2.56 16 17 C 0.13 3.93 2.80 44.99 0.13 4.06 16 18 H 0.07 2.63 6.90 -2.39 -0.02 2.61 16 19 C -0.14 -2.73 9.19 71.98 0.66 -2.06 16 20 C 0.14 5.16 5.50 86.38 0.48 5.64 16 21 N -0.74 -37.64 5.43 -343.47 -1.87 -39.51 16 22 C -0.24 -13.63 9.99 84.03 0.84 -12.79 16 23 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 24 C -0.08 -4.41 5.50 84.86 0.47 -3.94 16 25 N -0.97 -61.61 13.06 21.65 0.28 -61.32 16 26 Si 0.97 47.35 29.55 68.60 2.03 49.38 16 27 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 28 H -0.30 -15.05 7.11 99.48 0.71 -14.34 16 29 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 30 H 0.10 1.39 4.53 -2.39 -0.01 1.38 16 31 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.42 7.06 7.79 -92.71 -0.72 6.33 16 34 H 0.22 -0.92 8.08 -2.39 -0.02 -0.94 16 35 H 0.16 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.30 -0.58 8.06 -2.91 -0.02 -0.60 16 37 H 0.10 1.36 6.95 -2.39 -0.02 1.34 16 38 H 0.07 1.76 6.53 -2.39 -0.02 1.74 16 39 H 0.07 1.58 6.01 -2.38 -0.01 1.57 16 40 H 0.08 1.23 7.67 -2.39 -0.02 1.21 16 41 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.04 1.27 6.88 -2.39 -0.02 1.25 16 45 H 0.37 20.80 7.06 -92.71 -0.65 20.14 16 46 H 0.25 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -97.69 383.22 3.55 -94.14 By element: Atomic # 1 Polarization: 26.56 SS G_CDS: -0.33 Total: 26.22 kcal Atomic # 6 Polarization: 21.16 SS G_CDS: 8.51 Total: 29.68 kcal Atomic # 7 Polarization: -152.82 SS G_CDS: -6.56 Total: -159.38 kcal Atomic # 8 Polarization: -39.94 SS G_CDS: -0.09 Total: -40.03 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 2.03 Total: 49.38 kcal Total: -97.69 3.55 -94.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496207824.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.808 kcal (2) G-P(sol) polarization free energy of solvation -97.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds