Wall clock time and date at job start Tue Mar 31 2020 23:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 113.99589 * 2 1 4 4 C 1.53003 * 109.46744 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47511 * 65.00033 * 4 3 2 6 6 C 1.36935 * 119.99714 * 270.00075 * 5 4 3 7 7 H 1.08000 * 119.99926 * 146.39700 * 6 5 4 8 8 C 1.38811 * 120.00046 * 326.39648 * 6 5 4 9 9 N 1.31622 * 119.99724 * 335.78917 * 8 6 5 10 10 Si 1.86799 * 120.00118 * 155.79519 * 8 6 5 11 11 H 1.48500 * 109.47507 * 59.99584 * 10 8 6 12 12 H 1.48508 * 109.47249 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.46982 * 299.99207 * 10 8 6 14 14 C 1.46493 * 120.00214 * 89.99766 * 5 4 3 15 15 C 1.53039 * 109.46239 * 114.30949 * 14 5 4 16 16 C 1.53198 * 109.31416 * 181.36949 * 15 14 5 17 17 N 1.46921 * 108.77714 * 305.36925 * 16 15 14 18 18 C 1.34784 * 120.63113 * 233.58593 * 17 16 15 19 19 O 1.21703 * 119.99404 * 8.16708 * 18 17 16 20 20 C 1.46657 * 119.99848 * 188.16980 * 18 17 16 21 21 C 1.37931 * 126.21247 * 209.92827 * 20 18 17 22 22 C 1.39923 * 107.10814 * 180.25244 * 21 20 18 23 23 F 1.35102 * 126.07677 * 179.77097 * 22 21 20 24 24 C 1.35570 * 107.84130 * 359.77648 * 22 21 20 25 25 N 1.35744 * 108.83507 * 359.97438 * 24 22 21 26 26 H 0.97004 * 125.67744 * 179.97438 * 25 24 22 27 27 C 1.46921 * 118.74120 * 53.85806 * 17 16 15 28 28 C 1.53046 * 109.44974 * 234.37313 * 14 5 4 29 29 H 1.08998 * 109.46933 * 60.00492 * 1 2 3 30 30 H 1.08999 * 109.47146 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47289 * 300.00090 * 1 2 3 32 32 H 1.08998 * 109.47385 * 60.00183 * 3 2 1 33 33 H 1.08995 * 109.47279 * 299.99650 * 3 2 1 34 34 H 1.09006 * 109.47318 * 304.99678 * 4 3 2 35 35 H 1.09005 * 109.47056 * 185.00291 * 4 3 2 36 36 H 0.97006 * 119.99807 * 180.02562 * 9 8 6 37 37 H 1.09001 * 109.46215 * 354.33814 * 14 5 4 38 38 H 1.09010 * 109.49312 * 61.42183 * 15 14 5 39 39 H 1.08993 * 109.49612 * 301.32648 * 15 14 5 40 40 H 1.09001 * 109.58531 * 185.57939 * 16 15 14 41 41 H 1.08999 * 109.70198 * 65.22530 * 16 15 14 42 42 H 1.08002 * 126.44573 * 0.02562 * 21 20 18 43 43 H 1.08002 * 125.57770 * 180.02562 * 24 22 21 44 44 H 1.09003 * 109.58678 * 65.92763 * 27 17 16 45 45 H 1.08997 * 109.58730 * 186.35395 * 27 17 16 46 46 H 1.09000 * 109.49928 * 298.57271 * 28 14 5 47 47 H 1.09002 * 109.49376 * 58.67284 * 28 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5640 -1.2508 6 6 4.0978 -0.7974 -1.3343 7 1 3.8846 -1.3024 -2.2648 8 6 4.4947 -1.5283 -0.2230 9 7 5.1953 -0.9497 0.7293 10 14 4.0348 -3.3331 -0.0791 11 1 4.6083 -4.0831 -1.2253 12 1 4.5747 -3.8818 1.1909 13 1 2.5560 -3.4693 -0.0885 14 6 4.2883 1.3998 -2.4129 15 6 5.7808 1.2913 -2.7335 16 6 6.1094 2.1929 -3.9277 17 7 5.2247 1.8380 -5.0457 18 6 5.7352 1.5329 -6.2553 19 8 6.9375 1.4041 -6.3933 20 6 4.8418 1.3563 -7.4048 21 6 5.0620 0.5323 -8.4889 22 6 3.9645 0.6761 -9.3448 23 9 3.7884 0.0442 -10.5259 24 6 3.1092 1.5625 -8.7783 25 7 3.6303 1.9802 -7.5965 26 1 3.2192 2.6161 -6.9902 27 6 3.7727 1.8277 -4.8219 28 6 3.4705 0.9248 -3.6162 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6885 1.8464 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.8507 0.5686 0.8428 35 1 3.9784 2.1766 0.0903 36 1 5.4730 -1.4606 1.5058 37 1 4.0390 2.4375 -2.1913 38 1 6.0259 0.2580 -2.9794 39 1 6.3627 1.6076 -1.8678 40 1 7.1483 2.0447 -4.2225 41 1 5.9524 3.2364 -3.6546 42 1 5.9217 -0.1015 -8.6489 43 1 2.1672 1.8830 -9.1981 44 1 3.4271 2.8413 -4.6185 45 1 3.2693 1.4385 -5.7068 46 1 3.7374 -0.1050 -3.8538 47 1 2.4081 0.9804 -3.3788 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499539785.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:54 Heat of formation + Delta-G solvation = -38.073858 kcal Electronic energy + Delta-G solvation = -30676.610914 eV Core-core repulsion = 26390.422912 eV Total energy + Delta-G solvation = -4286.188003 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -48.64772 -41.63514 -39.47149 -37.68205 -36.89582 -35.05527 -32.25049 -31.31849 -30.83426 -30.59428 -29.23569 -28.09096 -25.71327 -25.16273 -23.61938 -23.16444 -22.17686 -21.04830 -20.69367 -20.32085 -19.56755 -18.04531 -16.74787 -16.28910 -15.96684 -15.85300 -15.74817 -15.37645 -15.10072 -15.06268 -14.82670 -14.68266 -14.07705 -14.00603 -13.92007 -13.66620 -13.57075 -13.45681 -13.19616 -13.01962 -12.35126 -12.11332 -11.89306 -11.77310 -11.60413 -11.41834 -10.96085 -10.86865 -10.79978 -10.61791 -10.47379 -10.24231 -9.99606 -9.87694 -9.83307 -9.48935 -9.11568 -8.87177 -8.63621 -8.40564 -8.36093 -6.59007 -5.71952 -3.22395 1.24843 2.23764 2.65486 2.87029 3.28397 3.46483 3.51259 3.57311 4.19794 4.54517 4.65241 4.65891 4.69876 4.86120 5.08500 5.10141 5.24268 5.29188 5.39453 5.48095 5.56572 5.69352 5.72061 5.76234 5.77046 5.86225 5.96892 6.00114 6.04116 6.09818 6.15740 6.21782 6.32236 6.40155 6.51379 6.61381 6.63554 6.68998 6.73209 6.96101 7.02356 7.16615 7.40409 7.65309 7.89047 8.04154 8.10800 8.56401 9.22837 9.89270 10.40674 11.30288 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012684 B = 0.003179 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.062366 B = 8804.324782 C = 8985.375948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.352 6.352 3 C 0.048 3.952 4 C 0.139 3.861 5 N -0.571 5.571 6 C -0.237 4.237 7 H 0.057 0.943 8 C 0.020 3.980 9 N -0.891 5.891 10 Si 0.893 3.107 11 H -0.286 1.286 12 H -0.294 1.294 13 H -0.282 1.282 14 C 0.177 3.823 15 C -0.136 4.136 16 C 0.113 3.887 17 N -0.601 5.601 18 C 0.586 3.414 19 O -0.527 6.527 20 C -0.011 4.011 21 C -0.139 4.139 22 C 0.005 3.995 23 F -0.128 7.128 24 C -0.009 4.009 25 N -0.527 5.527 26 H 0.428 0.572 27 C 0.094 3.906 28 C -0.136 4.136 29 H 0.027 0.973 30 H 0.073 0.927 31 H 0.026 0.974 32 H 0.023 0.977 33 H 0.024 0.976 34 H 0.109 0.891 35 H 0.038 0.962 36 H 0.252 0.748 37 H 0.047 0.953 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.087 0.913 41 H 0.063 0.937 42 H 0.158 0.842 43 H 0.182 0.818 44 H 0.066 0.934 45 H 0.077 0.923 46 H 0.074 0.926 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.465 10.130 -11.714 17.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.270 6.270 3 C -0.031 4.031 4 C 0.013 3.987 5 N -0.290 5.290 6 C -0.366 4.366 7 H 0.075 0.925 8 C -0.180 4.180 9 N -0.534 5.534 10 Si 0.723 3.277 11 H -0.213 1.213 12 H -0.220 1.220 13 H -0.208 1.208 14 C 0.069 3.931 15 C -0.177 4.177 16 C -0.009 4.009 17 N -0.334 5.334 18 C 0.374 3.626 19 O -0.403 6.403 20 C -0.126 4.126 21 C -0.166 4.166 22 C -0.021 4.021 23 F -0.107 7.107 24 C -0.145 4.145 25 N -0.127 5.127 26 H 0.270 0.730 27 C -0.030 4.030 28 C -0.176 4.176 29 H 0.046 0.954 30 H 0.092 0.908 31 H 0.044 0.956 32 H 0.041 0.959 33 H 0.043 0.957 34 H 0.126 0.874 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.106 0.894 41 H 0.081 0.919 42 H 0.176 0.824 43 H 0.199 0.801 44 H 0.084 0.916 45 H 0.095 0.905 46 H 0.092 0.908 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.663 9.914 -11.492 16.576 hybrid contribution -1.040 -0.594 0.187 1.212 sum -7.704 9.320 -11.305 16.553 Atomic orbital electron populations 1.22626 0.84395 1.01445 0.98285 1.88246 1.16389 1.27567 1.94775 1.23433 0.98981 0.84127 0.96594 1.21108 0.87448 0.96651 0.93522 1.43770 1.74995 1.02742 1.07462 1.18697 1.38962 0.81376 0.97607 0.92493 1.24870 0.96937 0.97401 0.98762 1.69956 1.35964 1.36330 1.11192 0.86530 0.78816 0.85674 0.76659 1.21266 1.22011 1.20821 1.20310 0.91461 0.93272 0.88044 1.22377 0.99416 1.00341 0.95523 1.21822 0.94702 0.98383 0.85996 1.48082 1.07773 1.67548 1.10000 1.17012 0.86920 0.77238 0.81459 1.90845 1.14249 1.50898 1.84349 1.20315 0.88918 1.03986 0.99333 1.21287 0.99966 1.02509 0.92850 1.16467 0.98100 1.01541 0.85982 1.91446 1.95477 1.80762 1.43055 1.21745 1.01255 1.02306 0.89207 1.42211 1.16434 1.35988 1.18092 0.73044 1.22227 0.79924 1.00518 1.00303 1.22378 1.00902 0.99979 0.94354 0.95419 0.90794 0.95587 0.95895 0.95734 0.87399 0.94372 0.93769 0.93522 0.90842 0.90864 0.89420 0.91923 0.82440 0.80125 0.91575 0.90512 0.90759 0.91285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.35 -7.42 10.18 -35.23 -0.36 -7.78 16 3 C 0.05 0.91 6.28 37.16 0.23 1.14 16 4 C 0.14 3.00 5.68 -4.04 -0.02 2.98 16 5 N -0.57 -12.67 2.37 -165.61 -0.39 -13.07 16 6 C -0.24 -6.05 7.93 -15.06 -0.12 -6.17 16 7 H 0.06 1.50 6.66 -52.49 -0.35 1.15 16 8 C 0.02 0.53 4.92 -17.43 -0.09 0.44 16 9 N -0.89 -24.80 11.37 55.49 0.63 -24.17 16 10 Si 0.89 21.97 29.62 -169.99 -5.03 16.94 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 13 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 14 C 0.18 3.17 2.58 -67.89 -0.18 2.99 16 15 C -0.14 -2.45 5.39 -26.61 -0.14 -2.60 16 16 C 0.11 1.67 6.44 -3.71 -0.02 1.64 16 17 N -0.60 -8.37 2.97 -174.05 -0.52 -8.88 16 18 C 0.59 8.91 7.60 -12.86 -0.10 8.82 16 19 O -0.53 -9.79 16.44 5.19 0.09 -9.71 16 20 C -0.01 -0.14 6.17 -81.98 -0.51 -0.65 16 21 C -0.14 -1.81 10.78 -39.06 -0.42 -2.23 16 22 C 0.00 0.06 7.98 -39.90 -0.32 -0.26 16 23 F -0.13 -1.58 17.32 2.25 0.04 -1.55 16 24 C -0.01 -0.08 11.90 -16.77 -0.20 -0.28 16 25 N -0.53 -4.72 4.69 -9.31 -0.04 -4.76 16 26 H 0.43 2.69 7.04 -40.82 -0.29 2.40 16 27 C 0.09 1.09 5.33 -3.49 -0.02 1.08 16 28 C -0.14 -2.14 5.21 -26.38 -0.14 -2.28 16 29 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.11 2.75 5.34 -51.93 -0.28 2.47 16 35 H 0.04 0.75 7.97 -51.93 -0.41 0.34 16 36 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 37 H 0.05 0.76 7.84 -51.93 -0.41 0.36 16 38 H 0.07 1.57 7.83 -51.92 -0.41 1.16 16 39 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 40 H 0.09 1.38 7.00 -51.93 -0.36 1.02 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.16 2.02 8.06 -52.49 -0.42 1.59 16 43 H 0.18 0.91 8.06 -52.49 -0.42 0.48 16 44 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.08 0.78 4.70 -51.93 -0.24 0.53 16 46 H 0.07 1.39 6.87 -51.93 -0.36 1.03 16 47 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 380.43 15.07 5.73 5.73 Total: -1.00 -31.59 380.43 -7.67 -39.26 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -6.89 Total: 1.77 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: -0.92 Total: 6.21 kcal Atomic # 7 Polarization: -50.56 SS G_CDS: -0.32 Total: -50.88 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.27 Total: -17.49 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.59 -7.67 -39.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499539785.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.190 kcal (2) G-P(sol) polarization free energy of solvation -31.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds