Wall clock time and date at job start Tue Mar 31 2020 23:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 113.99589 * 2 1 4 4 C 1.53003 * 109.46744 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47511 * 65.00033 * 4 3 2 6 6 C 1.36935 * 119.99714 * 270.00075 * 5 4 3 7 7 H 1.08000 * 119.99926 * 146.39700 * 6 5 4 8 8 C 1.38811 * 120.00046 * 326.39648 * 6 5 4 9 9 N 1.31622 * 119.99724 * 335.78917 * 8 6 5 10 10 Si 1.86799 * 120.00118 * 155.79519 * 8 6 5 11 11 H 1.48500 * 109.47507 * 59.99584 * 10 8 6 12 12 H 1.48508 * 109.47249 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.46982 * 299.99207 * 10 8 6 14 14 C 1.46493 * 120.00214 * 89.99766 * 5 4 3 15 15 C 1.53039 * 109.46239 * 114.30949 * 14 5 4 16 16 C 1.53198 * 109.31416 * 181.36949 * 15 14 5 17 17 N 1.46921 * 108.77714 * 305.36925 * 16 15 14 18 18 C 1.34784 * 120.63113 * 233.58593 * 17 16 15 19 19 O 1.21703 * 119.99404 * 8.16708 * 18 17 16 20 20 C 1.46657 * 119.99848 * 188.16980 * 18 17 16 21 21 C 1.37931 * 126.21247 * 209.92827 * 20 18 17 22 22 C 1.39923 * 107.10814 * 180.25244 * 21 20 18 23 23 F 1.35102 * 126.07677 * 179.77097 * 22 21 20 24 24 C 1.35570 * 107.84130 * 359.77648 * 22 21 20 25 25 N 1.35744 * 108.83507 * 359.97438 * 24 22 21 26 26 H 0.97004 * 125.67744 * 179.97438 * 25 24 22 27 27 C 1.46921 * 118.74120 * 53.85806 * 17 16 15 28 28 C 1.53046 * 109.44974 * 234.37313 * 14 5 4 29 29 H 1.08998 * 109.46933 * 60.00492 * 1 2 3 30 30 H 1.08999 * 109.47146 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47289 * 300.00090 * 1 2 3 32 32 H 1.08998 * 109.47385 * 60.00183 * 3 2 1 33 33 H 1.08995 * 109.47279 * 299.99650 * 3 2 1 34 34 H 1.09006 * 109.47318 * 304.99678 * 4 3 2 35 35 H 1.09005 * 109.47056 * 185.00291 * 4 3 2 36 36 H 0.97006 * 119.99807 * 180.02562 * 9 8 6 37 37 H 1.09001 * 109.46215 * 354.33814 * 14 5 4 38 38 H 1.09010 * 109.49312 * 61.42183 * 15 14 5 39 39 H 1.08993 * 109.49612 * 301.32648 * 15 14 5 40 40 H 1.09001 * 109.58531 * 185.57939 * 16 15 14 41 41 H 1.08999 * 109.70198 * 65.22530 * 16 15 14 42 42 H 1.08002 * 126.44573 * 0.02562 * 21 20 18 43 43 H 1.08002 * 125.57770 * 180.02562 * 24 22 21 44 44 H 1.09003 * 109.58678 * 65.92763 * 27 17 16 45 45 H 1.08997 * 109.58730 * 186.35395 * 27 17 16 46 46 H 1.09000 * 109.49928 * 298.57271 * 28 14 5 47 47 H 1.09002 * 109.49376 * 58.67284 * 28 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5640 -1.2508 6 6 4.0978 -0.7974 -1.3343 7 1 3.8846 -1.3024 -2.2648 8 6 4.4947 -1.5283 -0.2230 9 7 5.1953 -0.9497 0.7293 10 14 4.0348 -3.3331 -0.0791 11 1 4.6083 -4.0831 -1.2253 12 1 4.5747 -3.8818 1.1909 13 1 2.5560 -3.4693 -0.0885 14 6 4.2883 1.3998 -2.4129 15 6 5.7808 1.2913 -2.7335 16 6 6.1094 2.1929 -3.9277 17 7 5.2247 1.8380 -5.0457 18 6 5.7352 1.5329 -6.2553 19 8 6.9375 1.4041 -6.3933 20 6 4.8418 1.3563 -7.4048 21 6 5.0620 0.5323 -8.4889 22 6 3.9645 0.6761 -9.3448 23 9 3.7884 0.0442 -10.5259 24 6 3.1092 1.5625 -8.7783 25 7 3.6303 1.9802 -7.5965 26 1 3.2192 2.6161 -6.9902 27 6 3.7727 1.8277 -4.8219 28 6 3.4705 0.9248 -3.6162 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6885 1.8464 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.8507 0.5686 0.8428 35 1 3.9784 2.1766 0.0903 36 1 5.4730 -1.4606 1.5058 37 1 4.0390 2.4375 -2.1913 38 1 6.0259 0.2580 -2.9794 39 1 6.3627 1.6076 -1.8678 40 1 7.1483 2.0447 -4.2225 41 1 5.9524 3.2364 -3.6546 42 1 5.9217 -0.1015 -8.6489 43 1 2.1672 1.8830 -9.1981 44 1 3.4271 2.8413 -4.6185 45 1 3.2693 1.4385 -5.7068 46 1 3.7374 -0.1050 -3.8538 47 1 2.4081 0.9804 -3.3788 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499539785.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:53 Heat of formation + Delta-G solvation = -58.424984 kcal Electronic energy + Delta-G solvation = -30677.493405 eV Core-core repulsion = 26390.422912 eV Total energy + Delta-G solvation = -4287.070494 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.52420 -42.54498 -40.62124 -39.13174 -38.28532 -36.59075 -33.86902 -32.61234 -32.10535 -31.79649 -30.29256 -29.57242 -27.14080 -26.59424 -25.11263 -24.38047 -23.35993 -22.18514 -21.93237 -21.43769 -20.88735 -19.19687 -18.08714 -17.74719 -17.20396 -16.98254 -16.82466 -16.63658 -16.50965 -16.31476 -16.15750 -15.66489 -15.57487 -15.51948 -15.19216 -14.97694 -14.75452 -14.51078 -14.40845 -14.27601 -13.70452 -13.39990 -13.37638 -13.14888 -12.90746 -12.72845 -12.68934 -12.53531 -12.37861 -12.22566 -12.06953 -11.80877 -11.57696 -11.46168 -11.27397 -11.04958 -10.37591 -10.26461 -10.02778 -9.75789 -9.27126 -8.46978 -7.71173 -5.22244 0.31096 1.37822 1.45199 1.48718 1.54807 1.75151 1.82471 2.28430 2.59773 3.25280 3.26595 3.40392 3.61238 3.75455 3.85684 4.05851 4.12709 4.18047 4.25732 4.32774 4.41607 4.46361 4.50956 4.56776 4.60325 4.66616 4.69932 4.73069 4.81667 4.85837 4.87105 4.89239 4.94990 5.03583 5.09507 5.20806 5.35992 5.47750 5.61670 5.63330 5.72675 5.79159 5.92303 6.25789 6.34671 6.52218 6.73328 6.96146 7.31047 8.03273 8.47857 9.25536 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012684 B = 0.003179 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.062366 B = 8804.324782 C = 8985.375948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.398 6.398 3 C 0.057 3.943 4 C 0.135 3.865 5 N -0.583 5.583 6 C -0.217 4.217 7 H 0.043 0.957 8 C -0.028 4.028 9 N -0.917 5.917 10 Si 0.931 3.069 11 H -0.288 1.288 12 H -0.299 1.299 13 H -0.284 1.284 14 C 0.172 3.828 15 C -0.126 4.126 16 C 0.123 3.877 17 N -0.600 5.600 18 C 0.584 3.416 19 O -0.574 6.574 20 C -0.032 4.032 21 C -0.156 4.156 22 C -0.029 4.029 23 F -0.137 7.137 24 C 0.037 3.963 25 N -0.508 5.508 26 H 0.445 0.555 27 C 0.101 3.899 28 C -0.127 4.127 29 H 0.047 0.953 30 H 0.075 0.925 31 H 0.044 0.956 32 H 0.043 0.957 33 H 0.046 0.954 34 H 0.068 0.932 35 H 0.055 0.945 36 H 0.244 0.756 37 H 0.077 0.923 38 H 0.026 0.974 39 H 0.055 0.945 40 H 0.071 0.929 41 H 0.100 0.900 42 H 0.143 0.857 43 H 0.231 0.769 44 H 0.113 0.887 45 H 0.097 0.903 46 H 0.034 0.966 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.798 12.997 -13.283 21.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.317 6.317 3 C -0.022 4.022 4 C 0.009 3.991 5 N -0.302 5.302 6 C -0.348 4.348 7 H 0.061 0.939 8 C -0.224 4.224 9 N -0.563 5.563 10 Si 0.763 3.237 11 H -0.215 1.215 12 H -0.226 1.226 13 H -0.211 1.211 14 C 0.066 3.934 15 C -0.166 4.166 16 C 0.001 3.999 17 N -0.332 5.332 18 C 0.374 3.626 19 O -0.453 6.453 20 C -0.147 4.147 21 C -0.184 4.184 22 C -0.053 4.053 23 F -0.116 7.116 24 C -0.101 4.101 25 N -0.109 5.109 26 H 0.290 0.710 27 C -0.021 4.021 28 C -0.167 4.167 29 H 0.066 0.934 30 H 0.093 0.907 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.053 0.947 37 H 0.096 0.904 38 H 0.045 0.955 39 H 0.073 0.927 40 H 0.089 0.911 41 H 0.118 0.882 42 H 0.161 0.839 43 H 0.247 0.753 44 H 0.131 0.869 45 H 0.115 0.885 46 H 0.053 0.947 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.043 12.809 -13.052 20.864 hybrid contribution -0.068 -1.467 0.613 1.591 sum -10.111 11.342 -12.439 19.637 Atomic orbital electron populations 1.22787 0.81826 1.02243 1.00125 1.88169 1.19358 1.28965 1.95179 1.23245 0.96604 0.83840 0.98494 1.21049 0.89864 0.96431 0.91803 1.43944 1.75316 1.02069 1.08907 1.18697 1.36271 0.83342 0.96465 0.93894 1.25280 0.98256 0.99439 0.99401 1.70064 1.37937 1.36736 1.11557 0.85903 0.78178 0.83610 0.76055 1.21500 1.22552 1.21091 1.20560 0.91290 0.94208 0.87364 1.22197 0.99685 0.98304 0.96416 1.21657 0.94251 0.99284 0.84749 1.48136 1.08748 1.66949 1.09327 1.17341 0.86693 0.76280 0.82314 1.90817 1.16402 1.52961 1.85157 1.19778 0.90477 1.05785 0.98628 1.21383 1.00431 1.02769 0.93805 1.16663 0.98867 1.03528 0.86288 1.91421 1.95515 1.81188 1.43459 1.22413 1.01247 0.98944 0.87480 1.42158 1.14875 1.35408 1.18409 0.71003 1.22381 0.78454 1.02163 0.99148 1.22201 1.00783 0.98678 0.95013 0.93422 0.90677 0.93716 0.93894 0.93567 0.91467 0.92660 0.94678 0.90443 0.95485 0.92677 0.91072 0.88246 0.83940 0.75304 0.86923 0.88526 0.94676 0.90350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 11.01 113.37 1.25 2.03 16 2 O -0.40 -16.18 10.18 -148.98 -1.52 -17.70 16 3 C 0.06 2.00 6.28 71.98 0.45 2.46 16 4 C 0.13 5.71 5.68 86.38 0.49 6.20 16 5 N -0.58 -25.73 2.37 -677.88 -1.61 -27.34 16 6 C -0.22 -11.32 7.93 84.03 0.67 -10.66 16 7 H 0.04 2.34 6.66 -2.91 -0.02 2.32 16 8 C -0.03 -1.53 4.92 84.86 0.42 -1.11 16 9 N -0.92 -53.02 11.37 21.65 0.25 -52.77 16 10 Si 0.93 46.52 29.62 68.60 2.03 48.55 16 11 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 12 H -0.30 -15.04 7.11 99.48 0.71 -14.33 16 13 H -0.28 -14.12 7.11 99.48 0.71 -13.41 16 14 C 0.17 5.89 2.58 45.02 0.12 6.01 16 15 C -0.13 -4.57 5.39 30.67 0.17 -4.41 16 16 C 0.12 3.48 6.44 86.37 0.56 4.04 16 17 N -0.60 -15.54 2.97 -822.78 -2.44 -17.98 16 18 C 0.58 17.40 7.60 86.44 0.66 18.06 16 19 O -0.57 -21.97 16.44 -4.36 -0.07 -22.04 16 20 C -0.03 -0.77 6.17 40.36 0.25 -0.52 16 21 C -0.16 -4.02 10.78 22.61 0.24 -3.77 16 22 C -0.03 -0.60 7.98 22.06 0.18 -0.43 16 23 F -0.14 -3.19 17.32 44.97 0.78 -2.41 16 24 C 0.04 0.46 11.90 83.47 0.99 1.46 16 25 N -0.51 -6.86 4.69 -183.38 -0.86 -7.72 16 26 H 0.44 2.96 7.04 -92.71 -0.65 2.31 16 27 C 0.10 1.94 5.33 86.51 0.46 2.40 16 28 C -0.13 -3.70 5.21 30.82 0.16 -3.54 16 29 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.07 3.49 5.34 -2.38 -0.01 3.48 16 35 H 0.06 2.09 7.97 -2.38 -0.02 2.07 16 36 H 0.24 14.01 8.31 -92.70 -0.77 13.24 16 37 H 0.08 2.22 7.84 -2.39 -0.02 2.20 16 38 H 0.03 1.20 7.83 -2.38 -0.02 1.18 16 39 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.07 2.28 7.00 -2.39 -0.02 2.27 16 41 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.14 3.91 8.06 -2.91 -0.02 3.89 16 43 H 0.23 0.67 8.06 -2.91 -0.02 0.65 16 44 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.10 1.51 4.70 -2.39 -0.01 1.50 16 46 H 0.03 1.30 6.87 -2.39 -0.02 1.28 16 47 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -75.30 380.43 3.96 -71.35 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: 0.34 Total: 9.83 kcal Atomic # 6 Polarization: 11.16 SS G_CDS: 7.05 Total: 18.21 kcal Atomic # 7 Polarization: -101.14 SS G_CDS: -4.66 Total: -105.80 kcal Atomic # 8 Polarization: -38.15 SS G_CDS: -1.59 Total: -39.74 kcal Atomic # 9 Polarization: -3.19 SS G_CDS: 0.78 Total: -2.41 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal Total: -75.30 3.96 -71.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499539785.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.921 kcal (2) G-P(sol) polarization free energy of solvation -75.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds