Wall clock time and date at job start Tue Mar 31 2020 22:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.46739 * 2 1 4 4 C 1.52998 * 109.46845 * 240.00140 * 2 1 3 5 5 N 1.46508 * 109.46841 * 185.00027 * 4 2 1 6 6 C 1.34772 * 119.99758 * 180.02562 * 5 4 2 7 7 O 1.21278 * 120.00174 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.99740 * 180.27767 * 6 5 4 9 9 H 1.08998 * 109.47093 * 299.71992 * 8 6 5 10 10 C 1.52996 * 109.47188 * 59.72149 * 8 6 5 11 11 N 1.46504 * 109.47031 * 179.72520 * 8 6 5 12 12 C 1.34776 * 120.00069 * 155.00301 * 11 8 6 13 13 O 1.21281 * 119.99993 * 359.97438 * 12 11 8 14 14 C 1.50694 * 120.00154 * 180.02562 * 12 11 8 15 15 N 1.46501 * 109.47430 * 179.97438 * 14 12 11 16 16 C 1.34596 * 126.43909 * 124.99556 * 15 14 12 17 17 N 1.31069 * 106.67947 * 180.02562 * 16 15 14 18 18 N 1.28840 * 107.99069 * 0.02562 * 17 16 15 19 19 N 1.28747 * 109.39642 * 359.73270 * 18 17 16 20 20 N 1.46495 * 109.47277 * 119.99948 * 2 1 3 21 21 C 1.46500 * 119.99874 * 59.99905 * 20 2 1 22 22 C 1.36931 * 120.00374 * 240.00403 * 20 2 1 23 23 H 1.08003 * 119.99985 * 20.31651 * 22 20 2 24 24 C 1.38818 * 120.00114 * 200.32204 * 22 20 2 25 25 N 1.31614 * 119.99912 * 14.99581 * 24 22 20 26 26 Si 1.86803 * 119.99964 * 194.99069 * 24 22 20 27 27 H 1.48495 * 109.46995 * 85.00252 * 26 24 22 28 28 H 1.48500 * 109.46767 * 205.00189 * 26 24 22 29 29 H 1.48498 * 109.47087 * 325.00427 * 26 24 22 30 30 H 1.09005 * 109.47307 * 300.00214 * 1 2 3 31 31 H 1.09001 * 109.47215 * 59.99755 * 1 2 3 32 32 H 1.09004 * 109.47376 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47239 * 65.00228 * 4 2 1 34 34 H 1.09000 * 109.47343 * 304.99859 * 4 2 1 35 35 H 0.96999 * 120.00070 * 359.97438 * 5 4 2 36 36 H 1.08997 * 109.47356 * 300.00071 * 10 8 6 37 37 H 1.08998 * 109.47078 * 60.00460 * 10 8 6 38 38 H 1.09005 * 109.47040 * 179.97438 * 10 8 6 39 39 H 0.97002 * 119.99922 * 334.99334 * 11 8 6 40 40 H 1.09005 * 109.46882 * 299.99624 * 14 12 11 41 41 H 1.09002 * 109.47744 * 59.99019 * 14 12 11 42 42 H 1.08004 * 126.65922 * 0.03805 * 16 15 14 43 43 H 1.08999 * 109.47218 * 95.11485 * 21 20 2 44 44 H 1.09005 * 109.47535 * 215.12273 * 21 20 2 45 45 H 1.09002 * 109.47376 * 335.11550 * 21 20 2 46 46 H 0.97004 * 120.00332 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5001 -0.8264 -1.1906 6 6 4.1730 -1.4282 -2.1912 7 8 3.5699 -1.8832 -3.1400 8 6 5.6744 -1.5419 -2.1279 9 1 6.1127 -0.5450 -2.0831 10 6 6.0739 -2.3312 -0.8795 11 7 6.1623 -2.2367 -3.3219 12 6 7.4226 -2.0315 -3.7531 13 8 8.1527 -1.2713 -3.1530 14 6 7.9244 -2.7456 -4.9816 15 7 9.3127 -2.3558 -5.2403 16 6 10.3643 -3.1852 -5.3738 17 7 11.4130 -2.4306 -5.5943 18 7 11.0258 -1.2017 -5.5955 19 7 9.7562 -1.1533 -5.3872 20 7 2.0184 -0.6906 1.1961 21 6 1.6644 -2.0931 1.4280 22 6 2.8056 -0.0251 2.0975 23 1 2.8043 1.0546 2.1218 24 6 3.6052 -0.7383 2.9801 25 7 3.8400 -2.0162 2.7698 26 14 4.3482 0.1156 4.4661 27 1 3.3656 0.1156 5.5795 28 1 5.5755 -0.6054 4.8890 29 1 4.6939 1.5155 4.1111 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.7516 -0.1583 -2.1370 34 1 1.6053 -1.7198 -1.2952 35 1 3.9825 -0.4622 -0.4319 36 1 5.7109 -1.8143 0.0088 37 1 5.6357 -3.3282 -0.9243 38 1 7.1599 -2.4138 -0.8340 39 1 5.5784 -2.8445 -3.8019 40 1 7.8727 -3.8227 -4.8222 41 1 7.3058 -2.4750 -5.8373 42 1 10.3472 -4.2633 -5.3116 43 1 2.4604 -2.7357 1.0517 44 1 1.5347 -2.2633 2.4968 45 1 0.7347 -2.3240 0.9079 46 1 4.3985 -2.5147 3.3867 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506036905.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:39 Heat of formation + Delta-G solvation = 80.249127 kcal Electronic energy + Delta-G solvation = -29871.755668 eV Core-core repulsion = 25642.911248 eV Total energy + Delta-G solvation = -4228.844420 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.39161 -40.49108 -39.21808 -36.92543 -35.82318 -35.04191 -33.91380 -32.69627 -32.33767 -31.18779 -29.43330 -28.93018 -26.15871 -26.03972 -24.44972 -24.06378 -23.41736 -22.96955 -20.93660 -20.05849 -19.49790 -18.43140 -18.12370 -17.08349 -17.01666 -16.60129 -16.14506 -15.91777 -15.83302 -15.38789 -15.15784 -14.65572 -14.17342 -14.08906 -13.72367 -13.53710 -13.10420 -12.91549 -12.81755 -12.58935 -12.35376 -12.31173 -12.13186 -12.09089 -11.70698 -11.51866 -11.44199 -11.36185 -11.20447 -10.88126 -10.81075 -10.65647 -10.51562 -10.39293 -10.23693 -9.96202 -9.89216 -9.73569 -9.34163 -8.69349 -8.59909 -6.95869 -5.86968 -3.32299 0.97900 1.50657 2.06737 2.08605 2.60625 2.82333 3.29905 3.37292 3.38753 3.57644 3.80240 3.92496 4.13017 4.30136 4.36683 4.51839 4.89416 5.13699 5.14935 5.18412 5.25357 5.28304 5.42194 5.47156 5.71012 5.74996 5.83303 5.87368 5.97304 6.02417 6.13261 6.20635 6.27781 6.41762 6.58700 6.67972 6.76662 6.90099 7.08742 7.28483 7.60180 7.68416 7.72900 7.94354 8.22633 8.39386 8.48734 9.08606 9.71800 10.20097 11.15881 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.014506 B = 0.002603 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.762159 B =10753.804974 C =12024.183218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.157 3.843 3 H 0.069 0.931 4 C 0.107 3.893 5 N -0.689 5.689 6 C 0.509 3.491 7 O -0.563 6.563 8 C 0.128 3.872 9 H 0.113 0.887 10 C -0.157 4.157 11 N -0.700 5.700 12 C 0.503 3.497 13 O -0.510 6.510 14 C 0.097 3.903 15 N -0.300 5.300 16 C 0.160 3.840 17 N -0.308 5.308 18 N -0.079 5.079 19 N -0.061 5.061 20 N -0.594 5.594 21 C 0.163 3.837 22 C -0.263 4.263 23 H 0.069 0.931 24 C 0.007 3.993 25 N -0.900 5.900 26 Si 0.900 3.100 27 H -0.289 1.289 28 H -0.292 1.292 29 H -0.280 1.280 30 H 0.057 0.943 31 H 0.046 0.954 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.418 0.582 36 H 0.093 0.907 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.411 0.589 40 H 0.146 0.854 41 H 0.138 0.862 42 H 0.236 0.764 43 H 0.029 0.971 44 H 0.041 0.959 45 H -0.001 1.001 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.214 -6.027 -14.174 15.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.049 3.951 3 H 0.087 0.913 4 C -0.019 4.019 5 N -0.339 5.339 6 C 0.293 3.707 7 O -0.443 6.443 8 C 0.020 3.980 9 H 0.131 0.869 10 C -0.215 4.215 11 N -0.355 5.355 12 C 0.285 3.715 13 O -0.384 6.384 14 C -0.029 4.029 15 N -0.102 5.102 16 C -0.139 4.139 17 N -0.155 5.155 18 N -0.073 5.073 19 N -0.048 5.048 20 N -0.317 5.317 21 C 0.019 3.981 22 C -0.392 4.392 23 H 0.086 0.914 24 C -0.192 4.192 25 N -0.544 5.544 26 Si 0.730 3.270 27 H -0.216 1.216 28 H -0.218 1.218 29 H -0.206 1.206 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.255 0.745 36 H 0.111 0.889 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.248 0.752 40 H 0.163 0.837 41 H 0.156 0.844 42 H 0.252 0.748 43 H 0.048 0.952 44 H 0.060 0.940 45 H 0.017 0.983 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.087 -4.662 -14.433 15.478 hybrid contribution -0.370 -0.814 1.293 1.572 sum 2.716 -5.476 -13.140 14.492 Atomic orbital electron populations 1.22175 0.97381 1.01476 1.00758 1.20646 0.92707 0.95936 0.85855 0.91256 1.22009 0.79478 1.01180 0.99223 1.45787 1.08407 1.57109 1.22632 1.20309 0.88992 0.78444 0.82911 1.90628 1.69976 1.49616 1.34092 1.20851 0.92126 0.99109 0.85887 0.86910 1.22108 1.02200 1.00978 0.96227 1.45573 1.12946 1.47410 1.29545 1.20057 0.82777 0.83171 0.85500 1.90874 1.55466 1.35474 1.56565 1.21982 0.77826 1.02867 1.00207 1.48153 1.10484 1.05207 1.46366 1.27745 0.82349 1.01508 1.02291 1.74990 1.24482 0.97712 1.18310 1.78690 1.01447 1.11981 1.15220 1.79042 1.07703 1.03061 1.14976 1.43961 1.57763 1.09663 1.20308 1.20755 0.94068 0.84407 0.98900 1.19217 1.17817 0.90826 1.11330 0.91361 1.24910 0.98037 0.96121 1.00111 1.70076 1.40032 1.07573 1.36765 0.86351 0.78316 0.78831 0.83478 1.21571 1.21787 1.20572 0.92344 0.93540 0.92944 0.92675 0.92176 0.74451 0.88852 0.91816 0.91654 0.75152 0.83672 0.84412 0.74830 0.95230 0.94004 0.98298 0.93704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.40 9.18 37.16 0.34 -2.06 16 2 C 0.16 2.74 2.87 -67.93 -0.19 2.54 16 3 H 0.07 1.21 7.85 -51.93 -0.41 0.80 16 4 C 0.11 1.77 4.97 -4.04 -0.02 1.75 16 5 N -0.69 -11.43 5.28 -60.29 -0.32 -11.75 16 6 C 0.51 7.93 7.22 -10.99 -0.08 7.85 16 7 O -0.56 -9.63 15.84 5.56 0.09 -9.54 16 8 C 0.13 1.71 2.99 -69.08 -0.21 1.50 16 9 H 0.11 1.59 7.58 -51.93 -0.39 1.20 16 10 C -0.16 -2.21 9.38 37.16 0.35 -1.86 16 11 N -0.70 -7.23 4.95 -54.93 -0.27 -7.50 16 12 C 0.50 5.21 7.81 -10.99 -0.09 5.13 16 13 O -0.51 -7.84 15.37 5.56 0.09 -7.75 16 14 C 0.10 0.52 6.96 -5.20 -0.04 0.49 16 15 N -0.30 -2.79 3.19 -63.74 -0.20 -2.99 16 16 C 0.16 1.26 12.79 -90.39 -1.16 0.10 16 17 N -0.31 -3.83 12.36 29.59 0.37 -3.47 16 18 N -0.08 -1.18 13.43 60.35 0.81 -0.37 16 19 N -0.06 -0.85 12.30 60.35 0.74 -0.11 16 20 N -0.59 -12.63 2.29 -173.49 -0.40 -13.03 16 21 C 0.16 3.58 8.11 59.85 0.49 4.06 16 22 C -0.26 -6.25 9.35 -15.06 -0.14 -6.39 16 23 H 0.07 1.62 7.81 -52.48 -0.41 1.21 16 24 C 0.01 0.18 5.06 -17.43 -0.09 0.09 16 25 N -0.90 -22.97 10.67 55.49 0.59 -22.38 16 26 Si 0.90 20.18 29.58 -169.99 -5.03 15.16 16 27 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 28 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 29 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.80 6.66 -51.93 -0.35 0.46 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.06 1.06 7.84 -51.93 -0.41 0.66 16 35 H 0.42 7.46 7.30 -40.82 -0.30 7.16 16 36 H 0.09 1.55 7.56 -51.93 -0.39 1.15 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.41 3.49 7.79 -40.82 -0.32 3.17 16 40 H 0.15 0.06 8.08 -51.93 -0.42 -0.36 16 41 H 0.14 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.24 0.41 8.06 -52.48 -0.42 -0.01 16 43 H 0.03 0.70 7.40 -51.93 -0.38 0.32 16 44 H 0.04 1.01 7.21 -51.93 -0.37 0.64 16 45 H 0.00 -0.03 6.44 -51.93 -0.33 -0.36 16 46 H 0.25 6.44 8.31 -40.82 -0.34 6.11 16 LS Contribution 387.99 15.07 5.85 5.85 Total: -1.00 -33.76 387.99 -5.10 -38.86 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -6.58 Total: 5.81 kcal Atomic # 6 Polarization: 14.04 SS G_CDS: -0.83 Total: 13.21 kcal Atomic # 7 Polarization: -62.90 SS G_CDS: 1.32 Total: -61.58 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: 0.17 Total: -17.30 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.03 Total: 15.16 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.76 -5.10 -38.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506036905.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.108 kcal (2) G-P(sol) polarization free energy of solvation -33.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds