Wall clock time and date at job start Tue Mar 31 2020 22:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.46739 * 2 1 4 4 C 1.52998 * 109.46845 * 240.00140 * 2 1 3 5 5 N 1.46508 * 109.46841 * 185.00027 * 4 2 1 6 6 C 1.34772 * 119.99758 * 180.02562 * 5 4 2 7 7 O 1.21278 * 120.00174 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.99740 * 180.27767 * 6 5 4 9 9 H 1.08998 * 109.47093 * 299.71992 * 8 6 5 10 10 C 1.52996 * 109.47188 * 59.72149 * 8 6 5 11 11 N 1.46504 * 109.47031 * 179.72520 * 8 6 5 12 12 C 1.34776 * 120.00069 * 155.00301 * 11 8 6 13 13 O 1.21281 * 119.99993 * 359.97438 * 12 11 8 14 14 C 1.50694 * 120.00154 * 180.02562 * 12 11 8 15 15 N 1.46501 * 109.47430 * 179.97438 * 14 12 11 16 16 C 1.34596 * 126.43909 * 124.99556 * 15 14 12 17 17 N 1.31069 * 106.67947 * 180.02562 * 16 15 14 18 18 N 1.28840 * 107.99069 * 0.02562 * 17 16 15 19 19 N 1.28747 * 109.39642 * 359.73270 * 18 17 16 20 20 N 1.46495 * 109.47277 * 119.99948 * 2 1 3 21 21 C 1.46500 * 119.99874 * 59.99905 * 20 2 1 22 22 C 1.36931 * 120.00374 * 240.00403 * 20 2 1 23 23 H 1.08003 * 119.99985 * 20.31651 * 22 20 2 24 24 C 1.38818 * 120.00114 * 200.32204 * 22 20 2 25 25 N 1.31614 * 119.99912 * 14.99581 * 24 22 20 26 26 Si 1.86803 * 119.99964 * 194.99069 * 24 22 20 27 27 H 1.48495 * 109.46995 * 85.00252 * 26 24 22 28 28 H 1.48500 * 109.46767 * 205.00189 * 26 24 22 29 29 H 1.48498 * 109.47087 * 325.00427 * 26 24 22 30 30 H 1.09005 * 109.47307 * 300.00214 * 1 2 3 31 31 H 1.09001 * 109.47215 * 59.99755 * 1 2 3 32 32 H 1.09004 * 109.47376 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47239 * 65.00228 * 4 2 1 34 34 H 1.09000 * 109.47343 * 304.99859 * 4 2 1 35 35 H 0.96999 * 120.00070 * 359.97438 * 5 4 2 36 36 H 1.08997 * 109.47356 * 300.00071 * 10 8 6 37 37 H 1.08998 * 109.47078 * 60.00460 * 10 8 6 38 38 H 1.09005 * 109.47040 * 179.97438 * 10 8 6 39 39 H 0.97002 * 119.99922 * 334.99334 * 11 8 6 40 40 H 1.09005 * 109.46882 * 299.99624 * 14 12 11 41 41 H 1.09002 * 109.47744 * 59.99019 * 14 12 11 42 42 H 1.08004 * 126.65922 * 0.03805 * 16 15 14 43 43 H 1.08999 * 109.47218 * 95.11485 * 21 20 2 44 44 H 1.09005 * 109.47535 * 215.12273 * 21 20 2 45 45 H 1.09002 * 109.47376 * 335.11550 * 21 20 2 46 46 H 0.97004 * 120.00332 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5001 -0.8264 -1.1906 6 6 4.1730 -1.4282 -2.1912 7 8 3.5699 -1.8832 -3.1400 8 6 5.6744 -1.5419 -2.1279 9 1 6.1127 -0.5450 -2.0831 10 6 6.0739 -2.3312 -0.8795 11 7 6.1623 -2.2367 -3.3219 12 6 7.4226 -2.0315 -3.7531 13 8 8.1527 -1.2713 -3.1530 14 6 7.9244 -2.7456 -4.9816 15 7 9.3127 -2.3558 -5.2403 16 6 10.3643 -3.1852 -5.3738 17 7 11.4130 -2.4306 -5.5943 18 7 11.0258 -1.2017 -5.5955 19 7 9.7562 -1.1533 -5.3872 20 7 2.0184 -0.6906 1.1961 21 6 1.6644 -2.0931 1.4280 22 6 2.8056 -0.0251 2.0975 23 1 2.8043 1.0546 2.1218 24 6 3.6052 -0.7383 2.9801 25 7 3.8400 -2.0162 2.7698 26 14 4.3482 0.1156 4.4661 27 1 3.3656 0.1156 5.5795 28 1 5.5755 -0.6054 4.8890 29 1 4.6939 1.5155 4.1111 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.7516 -0.1583 -2.1370 34 1 1.6053 -1.7198 -1.2952 35 1 3.9825 -0.4622 -0.4319 36 1 5.7109 -1.8143 0.0088 37 1 5.6357 -3.3282 -0.9243 38 1 7.1599 -2.4138 -0.8340 39 1 5.5784 -2.8445 -3.8019 40 1 7.8727 -3.8227 -4.8222 41 1 7.3058 -2.4750 -5.8373 42 1 10.3472 -4.2633 -5.3116 43 1 2.4604 -2.7357 1.0517 44 1 1.5347 -2.2633 2.4968 45 1 0.7347 -2.3240 0.9079 46 1 4.3985 -2.5147 3.3867 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506036905.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:38 Heat of formation + Delta-G solvation = 54.489045 kcal Electronic energy + Delta-G solvation = -29872.872709 eV Core-core repulsion = 25642.911248 eV Total energy + Delta-G solvation = -4229.961461 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -45.16188 -41.52320 -40.35946 -38.43036 -36.63250 -36.05560 -35.41287 -33.88635 -33.46764 -32.27828 -31.00620 -29.70175 -27.96478 -27.32852 -25.51931 -24.89821 -24.78700 -24.10181 -21.82425 -21.26702 -20.93423 -19.39798 -18.81306 -18.77550 -17.95550 -17.61285 -17.11266 -16.98568 -16.89844 -16.70100 -16.26578 -15.93697 -15.70559 -15.15573 -14.80766 -14.64279 -14.47747 -14.35318 -14.00423 -13.78614 -13.59845 -13.42738 -13.31638 -13.16156 -13.14039 -12.83437 -12.69415 -12.58935 -12.47171 -12.24668 -12.21617 -12.13738 -12.07617 -11.70965 -11.50106 -11.45736 -11.10329 -10.94878 -10.57177 -10.37109 -9.94087 -8.75840 -7.75543 -5.20098 0.26680 0.94171 1.26401 1.31238 1.48745 1.53105 1.53841 1.57274 1.79373 2.42497 2.54520 3.22190 3.37802 3.48575 3.52894 3.63012 3.72138 3.97682 4.01472 4.02960 4.05794 4.08866 4.39642 4.42081 4.59901 4.64228 4.71083 4.72486 4.74668 4.85752 4.87842 5.10528 5.11764 5.19271 5.22303 5.30427 5.35283 5.47255 5.61164 5.73086 5.80339 6.29236 6.37348 6.57556 6.98307 7.16008 7.22100 7.58468 7.93746 8.37373 9.24946 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.014506 B = 0.002603 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.762159 B =10753.804974 C =12024.183218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.155 3.845 3 H 0.070 0.930 4 C 0.115 3.885 5 N -0.696 5.696 6 C 0.512 3.488 7 O -0.574 6.574 8 C 0.138 3.862 9 H 0.103 0.897 10 C -0.142 4.142 11 N -0.691 5.691 12 C 0.501 3.499 13 O -0.565 6.565 14 C 0.099 3.901 15 N -0.299 5.299 16 C 0.186 3.814 17 N -0.348 5.348 18 N -0.119 5.119 19 N -0.098 5.098 20 N -0.601 5.601 21 C 0.181 3.819 22 C -0.257 4.257 23 H 0.070 0.930 24 C -0.036 4.036 25 N -0.920 5.920 26 Si 0.948 3.052 27 H -0.295 1.295 28 H -0.302 1.302 29 H -0.274 1.274 30 H 0.050 0.950 31 H 0.076 0.924 32 H 0.050 0.950 33 H 0.073 0.927 34 H 0.050 0.950 35 H 0.411 0.589 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.424 0.576 40 H 0.208 0.792 41 H 0.170 0.830 42 H 0.297 0.703 43 H 0.006 0.994 44 H 0.011 0.989 45 H 0.024 0.976 46 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.190 -7.292 -15.941 17.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.048 3.952 3 H 0.089 0.911 4 C -0.011 4.011 5 N -0.345 5.345 6 C 0.297 3.703 7 O -0.456 6.456 8 C 0.029 3.971 9 H 0.121 0.879 10 C -0.200 4.200 11 N -0.346 5.346 12 C 0.286 3.714 13 O -0.443 6.443 14 C -0.024 4.024 15 N -0.102 5.102 16 C -0.112 4.112 17 N -0.195 5.195 18 N -0.114 5.114 19 N -0.085 5.085 20 N -0.324 5.324 21 C 0.036 3.964 22 C -0.387 4.387 23 H 0.087 0.913 24 C -0.232 4.232 25 N -0.566 5.566 26 Si 0.779 3.221 27 H -0.223 1.223 28 H -0.229 1.229 29 H -0.199 1.199 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.068 0.932 35 H 0.247 0.753 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.263 0.737 40 H 0.225 0.775 41 H 0.188 0.812 42 H 0.312 0.688 43 H 0.025 0.975 44 H 0.030 0.970 45 H 0.042 0.958 46 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 2.014 -5.923 -16.246 17.409 hybrid contribution -0.152 -0.456 1.813 1.876 sum 1.862 -6.379 -14.433 15.889 Atomic orbital electron populations 1.22066 0.95134 1.01740 1.01933 1.20836 0.94228 0.95550 0.84634 0.91146 1.21907 0.79383 1.00607 0.99228 1.45873 1.08576 1.57403 1.22672 1.20559 0.89716 0.77715 0.82306 1.90614 1.70498 1.50045 1.34394 1.20551 0.90560 0.98975 0.87039 0.87897 1.21917 1.02012 1.00648 0.95469 1.45454 1.13423 1.47160 1.28526 1.20919 0.81847 0.82335 0.86270 1.90869 1.56764 1.37996 1.58667 1.22490 0.76146 1.05457 0.98282 1.48407 1.12017 1.04231 1.45503 1.28822 0.80542 1.03258 0.98546 1.74879 1.26829 0.97588 1.20217 1.78650 1.02257 1.13613 1.16843 1.78948 1.07656 1.05669 1.16238 1.44060 1.57478 1.09421 1.21478 1.20437 0.94329 0.84604 0.97016 1.19416 1.16981 0.90981 1.11296 0.91252 1.25391 0.99170 0.96653 1.02004 1.70195 1.40939 1.08356 1.37085 0.85586 0.77029 0.78253 0.81268 1.22303 1.22866 1.19899 0.93061 0.90500 0.93088 0.90898 0.93193 0.75278 0.91748 0.91620 0.91543 0.73682 0.77496 0.81247 0.68798 0.97535 0.97008 0.95807 0.94603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.16 9.18 71.98 0.66 -3.49 16 2 C 0.15 5.14 2.87 44.99 0.13 5.27 16 3 H 0.07 2.34 7.85 -2.39 -0.02 2.32 16 4 C 0.11 3.59 4.97 86.38 0.43 4.02 16 5 N -0.70 -22.73 5.28 -463.05 -2.44 -25.18 16 6 C 0.51 15.48 7.22 87.66 0.63 16.11 16 7 O -0.57 -18.61 15.84 -3.02 -0.05 -18.66 16 8 C 0.14 3.61 2.99 44.24 0.13 3.74 16 9 H 0.10 2.96 7.58 -2.39 -0.02 2.94 16 10 C -0.14 -4.02 9.38 71.98 0.68 -3.35 16 11 N -0.69 -12.86 4.95 -446.10 -2.21 -15.07 16 12 C 0.50 9.35 7.81 87.66 0.68 10.03 16 13 O -0.57 -17.22 15.37 -3.03 -0.05 -17.27 16 14 C 0.10 0.65 6.96 85.63 0.60 1.25 16 15 N -0.30 -4.77 3.19 -355.56 -1.13 -5.90 16 16 C 0.19 2.31 12.79 180.27 2.31 4.62 16 17 N -0.35 -8.33 12.36 -60.30 -0.74 -9.08 16 18 N -0.12 -3.61 13.43 37.01 0.50 -3.11 16 19 N -0.10 -2.67 12.30 37.02 0.46 -2.21 16 20 N -0.60 -25.30 2.29 -702.79 -1.61 -26.91 16 21 C 0.18 7.95 8.11 127.77 1.04 8.98 16 22 C -0.26 -12.17 9.35 84.04 0.79 -11.39 16 23 H 0.07 3.25 7.81 -2.91 -0.02 3.22 16 24 C -0.04 -1.77 5.06 84.86 0.43 -1.34 16 25 N -0.92 -47.99 10.67 21.65 0.23 -47.76 16 26 Si 0.95 42.00 29.58 68.60 2.03 44.03 16 27 H -0.30 -13.31 7.11 99.48 0.71 -12.61 16 28 H -0.30 -13.77 7.11 99.48 0.71 -13.07 16 29 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 30 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 31 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.05 1.43 6.66 -2.38 -0.02 1.42 16 33 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.05 1.68 7.84 -2.39 -0.02 1.66 16 35 H 0.41 14.80 7.30 -92.71 -0.68 14.12 16 36 H 0.06 2.22 7.56 -2.39 -0.02 2.20 16 37 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 39 H 0.42 5.89 7.79 -92.71 -0.72 5.17 16 40 H 0.21 -1.22 8.08 -2.38 -0.02 -1.24 16 41 H 0.17 0.16 8.14 -2.39 -0.02 0.14 16 42 H 0.30 -0.73 8.06 -2.91 -0.02 -0.75 16 43 H 0.01 0.31 7.40 -2.39 -0.02 0.29 16 44 H 0.01 0.56 7.21 -2.38 -0.02 0.54 16 45 H 0.02 0.90 6.44 -2.39 -0.02 0.89 16 46 H 0.24 12.81 8.31 -92.71 -0.77 12.04 16 Total: -1.00 -78.70 387.99 3.10 -75.60 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -0.37 Total: 17.07 kcal Atomic # 6 Polarization: 25.96 SS G_CDS: 8.50 Total: 34.45 kcal Atomic # 7 Polarization: -128.26 SS G_CDS: -6.96 Total: -135.22 kcal Atomic # 8 Polarization: -35.83 SS G_CDS: -0.09 Total: -35.93 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -78.70 3.10 -75.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506036905.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.087 kcal (2) G-P(sol) polarization free energy of solvation -78.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds