Wall clock time and date at job start Tue Mar 31 2020 22:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53007 * 109.47018 * 2 1 4 4 C 1.53003 * 109.47353 * 119.99274 * 2 1 3 5 5 C 1.50696 * 109.47400 * 175.00215 * 4 2 1 6 6 N 1.28643 * 124.72281 * 90.00449 * 5 4 2 7 7 C 1.33560 * 115.77275 * 179.97438 * 6 5 4 8 8 C 1.47266 * 123.14271 * 179.97438 * 7 6 5 9 9 O 1.21637 * 119.99682 * 179.97438 * 8 7 6 10 10 N 1.34773 * 120.00104 * 359.97438 * 8 7 6 11 11 C 1.46500 * 119.99910 * 179.97438 * 10 8 7 12 12 H 1.09001 * 109.47297 * 34.99871 * 11 10 8 13 13 C 1.53006 * 109.46998 * 275.00232 * 11 10 8 14 14 C 1.52997 * 109.47007 * 155.00372 * 11 10 8 15 15 C 1.53001 * 109.46997 * 294.99685 * 14 11 10 16 16 C 1.52997 * 109.46997 * 179.97438 * 15 14 11 17 17 N 1.46503 * 109.47269 * 180.02562 * 16 15 14 18 18 C 1.36937 * 120.00090 * 180.02562 * 17 16 15 19 19 H 1.08000 * 119.99760 * 359.97438 * 18 17 16 20 20 C 1.38809 * 119.99862 * 180.02562 * 18 17 16 21 21 N 1.31623 * 120.00010 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00117 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47429 * 59.99240 * 22 20 18 24 24 H 1.48499 * 109.47258 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.46736 * 299.99397 * 22 20 18 26 26 C 1.35205 * 113.70996 * 0.26702 * 7 6 5 27 27 S 1.70778 * 124.71946 * 269.96410 * 5 4 2 28 28 H 1.08995 * 109.47770 * 300.00249 * 1 2 3 29 29 H 1.09005 * 109.47555 * 60.00602 * 1 2 3 30 30 H 1.09009 * 109.46933 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47770 * 239.99751 * 2 1 3 32 32 H 1.08995 * 109.47053 * 59.99312 * 3 2 1 33 33 H 1.08996 * 109.46951 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.46304 * 299.99543 * 3 2 1 35 35 H 1.09009 * 109.46703 * 55.00151 * 4 2 1 36 36 H 1.08997 * 109.47013 * 295.00683 * 4 2 1 37 37 H 0.96995 * 119.99797 * 0.02562 * 10 8 7 38 38 H 1.09001 * 109.47002 * 179.97438 * 13 11 10 39 39 H 1.08993 * 109.46955 * 300.00226 * 13 11 10 40 40 H 1.09000 * 109.47050 * 60.00054 * 13 11 10 41 41 H 1.08993 * 109.47322 * 54.99986 * 14 11 10 42 42 H 1.09002 * 109.47196 * 175.00109 * 14 11 10 43 43 H 1.08993 * 109.47331 * 300.00296 * 15 14 11 44 44 H 1.09001 * 109.46791 * 60.00740 * 15 14 11 45 45 H 1.09006 * 109.47271 * 300.00048 * 16 15 14 46 46 H 1.09002 * 109.47196 * 60.00425 * 16 15 14 47 47 H 0.97002 * 119.99507 * 0.02562 * 17 16 15 48 48 H 0.97003 * 120.00079 * 180.02562 * 21 20 18 49 49 H 1.08005 * 125.58165 * 179.73787 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5419 -0.8292 1.1890 6 7 4.3590 0.0458 1.6597 7 6 5.6568 -0.2314 1.5092 8 6 6.7304 0.6567 1.9860 9 8 7.8948 0.3473 1.8188 10 7 6.4228 1.8122 2.6077 11 6 7.4908 2.6954 3.0826 12 1 8.3318 2.6533 2.3905 13 6 7.9490 2.2413 4.4700 14 6 6.9676 4.1309 3.1628 15 6 6.6261 4.6285 1.7569 16 6 6.1023 6.0638 1.8372 17 7 5.7746 6.5402 0.4911 18 6 5.2852 7.8066 0.3132 19 1 5.1402 8.4541 1.1653 20 6 4.9743 8.2577 -0.9622 21 7 5.1504 7.4683 -2.0006 22 14 4.3072 9.9856 -1.2050 23 1 5.2978 10.9733 -0.7067 24 1 4.0576 10.2214 -2.6498 25 1 3.0363 10.1359 -0.4517 26 6 5.8927 -1.4005 0.8724 27 16 4.3960 -2.1309 0.4872 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8901 30 1 -0.3633 -1.0278 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.6765 1.9564 0.8899 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9563 -0.8901 35 1 1.6053 -1.7197 1.2953 36 1 1.7515 -0.1581 2.1370 37 1 5.4942 2.0587 2.7414 38 1 8.7440 2.8981 4.8232 39 1 7.1081 2.2833 5.1621 40 1 8.3217 1.2186 4.4129 41 1 6.0730 4.1574 3.7849 42 1 7.7329 4.7727 3.5994 43 1 7.5206 4.6021 1.1348 44 1 5.8607 3.9868 1.3203 45 1 5.2075 6.0898 2.4592 46 1 6.8672 6.7059 2.2740 47 1 5.9045 5.9584 -0.2742 48 1 4.9335 7.7837 -2.8919 49 1 6.8673 -1.8076 0.6464 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506951425.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:55 Heat of formation + Delta-G solvation = -16.030448 kcal Electronic energy + Delta-G solvation = -27039.529357 eV Core-core repulsion = 23320.510404 eV Total energy + Delta-G solvation = -3719.018952 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.71526 -39.11763 -36.84324 -36.41773 -34.79602 -32.54254 -31.49609 -30.90378 -29.34082 -28.08754 -27.24479 -25.83463 -25.26884 -22.99812 -22.04640 -20.83314 -20.63873 -20.43646 -19.99550 -18.80716 -16.98328 -16.74121 -16.29115 -15.75249 -15.61375 -14.91241 -14.63779 -14.61344 -14.32850 -14.19173 -13.88222 -13.79392 -13.55049 -13.33265 -12.96617 -12.62357 -12.59109 -12.42767 -12.30174 -12.11485 -12.07845 -12.03167 -11.33327 -11.26989 -11.13345 -11.10456 -10.95175 -10.81340 -10.76061 -10.44700 -10.36380 -10.15776 -10.03665 -9.98047 -9.86768 -9.64209 -9.22164 -8.96651 -8.81833 -6.86731 -5.71637 -3.00160 0.28808 0.96126 1.35512 1.79758 3.16031 3.28823 3.46601 3.50455 3.51931 3.70898 4.45135 4.57797 4.60555 4.64360 4.78129 4.91215 5.00077 5.04554 5.10144 5.21299 5.23300 5.32406 5.45404 5.47403 5.55884 5.60669 5.62098 5.64786 5.67461 5.74686 5.80439 5.84325 5.99007 6.00979 6.09924 6.10750 6.17822 6.26491 6.32511 6.41250 6.46995 6.51852 6.92724 6.96041 7.15705 7.56178 7.73189 8.15379 8.47377 9.57971 10.17672 10.52177 11.51321 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008210 B = 0.003060 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3409.518972 B = 9147.066362 C =11671.882160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 C -0.149 4.149 4 C -0.040 4.040 5 C 0.036 3.964 6 N -0.437 5.437 7 C 0.013 3.987 8 C 0.595 3.405 9 O -0.539 6.539 10 N -0.701 5.701 11 C 0.140 3.860 12 H 0.090 0.910 13 C -0.162 4.162 14 C -0.122 4.122 15 C -0.126 4.126 16 C 0.154 3.846 17 N -0.734 5.734 18 C -0.239 4.239 19 H 0.069 0.931 20 C -0.015 4.015 21 N -0.934 5.934 22 Si 0.907 3.093 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.228 4.228 27 S 0.201 5.799 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.410 0.590 38 H 0.067 0.933 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.068 0.932 42 H 0.080 0.920 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.016 0.984 46 H 0.017 0.983 47 H 0.383 0.617 48 H 0.255 0.745 49 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.065 -23.854 9.402 26.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 C -0.206 4.206 4 C -0.081 4.081 5 C -0.244 4.244 6 N -0.152 5.152 7 C -0.122 4.122 8 C 0.378 3.622 9 O -0.417 6.417 10 N -0.352 5.352 11 C 0.036 3.964 12 H 0.108 0.892 13 C -0.220 4.220 14 C -0.160 4.160 15 C -0.164 4.164 16 C 0.026 3.974 17 N -0.378 5.378 18 C -0.370 4.370 19 H 0.087 0.913 20 C -0.211 4.211 21 N -0.583 5.583 22 Si 0.738 3.262 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.370 4.370 27 S 0.459 5.541 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.104 0.896 36 H 0.116 0.884 37 H 0.246 0.754 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.098 0.902 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.034 0.966 46 H 0.035 0.965 47 H 0.216 0.784 48 H 0.065 0.935 49 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -4.764 -24.304 9.104 26.387 hybrid contribution 0.045 1.522 -0.133 1.528 sum -4.719 -22.783 8.971 24.936 Atomic orbital electron populations 1.21829 0.94290 1.01694 1.02566 1.21137 0.96082 0.97351 0.96472 1.21855 1.01861 0.94604 1.02284 1.20450 0.84397 1.02292 1.00943 1.27110 1.01603 0.94311 1.01377 1.66932 1.00590 1.28620 1.19088 1.20451 0.90779 0.96232 1.04762 1.17048 0.86667 0.80910 0.77529 1.90806 1.18981 1.74120 1.57772 1.45914 1.11130 1.20173 1.57946 1.21113 0.90459 0.89044 0.95808 0.89207 1.22171 1.01453 1.01938 0.96429 1.21843 1.01830 0.93746 0.98630 1.21732 1.01384 0.97763 0.95503 1.20639 0.96289 0.91469 0.88988 1.42374 1.78098 1.14787 1.02543 1.19204 1.34738 0.90526 0.92577 0.91294 1.24739 1.02480 0.98277 0.95560 1.69661 1.54723 1.35830 0.98092 0.86269 0.78832 0.84429 0.76680 1.21293 1.21683 1.21286 1.26570 1.05382 0.99975 1.05081 1.82836 0.94815 1.23350 1.53105 0.92263 0.92073 0.92681 0.91064 0.92191 0.92178 0.92420 0.89571 0.88443 0.75395 0.91414 0.92465 0.92359 0.91352 0.90178 0.92008 0.91992 0.96580 0.96535 0.78351 0.93525 0.79479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.19 37.15 0.34 -0.63 16 2 C -0.09 -0.72 2.91 -90.62 -0.26 -0.98 16 3 C -0.15 -1.63 8.99 37.16 0.33 -1.29 16 4 C -0.04 -0.29 5.26 -27.88 -0.15 -0.44 16 5 C 0.04 0.34 5.84 -13.62 -0.08 0.26 16 6 N -0.44 -5.19 9.34 -8.51 -0.08 -5.27 16 7 C 0.01 0.16 6.70 -84.53 -0.57 -0.40 16 8 C 0.60 8.69 7.76 -12.59 -0.10 8.60 16 9 O -0.54 -9.19 16.38 5.24 0.09 -9.11 16 10 N -0.70 -9.19 4.53 -54.93 -0.25 -9.44 16 11 C 0.14 1.76 2.57 -67.93 -0.17 1.59 16 12 H 0.09 1.29 7.58 -51.93 -0.39 0.89 16 13 C -0.16 -1.74 9.48 37.16 0.35 -1.39 16 14 C -0.12 -1.56 4.75 -26.73 -0.13 -1.69 16 15 C -0.13 -2.12 5.22 -26.73 -0.14 -2.26 16 16 C 0.15 3.20 6.26 -4.04 -0.03 3.18 16 17 N -0.73 -19.49 5.60 -59.91 -0.34 -19.83 16 18 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 19 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 20 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 21 N -0.93 -29.03 13.06 55.49 0.72 -28.31 16 22 Si 0.91 22.86 29.55 -169.99 -5.02 17.83 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 24 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 C -0.23 -2.44 10.62 29.65 0.31 -2.13 16 27 S 0.20 1.59 22.92 -107.50 -2.46 -0.88 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.29 8.14 -51.92 -0.42 -0.14 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.78 6.79 -51.93 -0.35 0.43 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.09 0.42 8.14 -51.92 -0.42 0.00 16 36 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.41 5.11 8.12 -40.82 -0.33 4.78 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.06 1.09 7.75 -51.93 -0.40 0.69 16 45 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.38 10.74 7.67 -40.82 -0.31 10.43 16 48 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 49 H 0.19 1.83 8.03 -52.48 -0.42 1.41 16 LS Contribution 416.11 15.07 6.27 6.27 Total: -1.00 -33.88 416.11 -10.12 -44.00 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: -8.53 Total: 9.93 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: -0.52 Total: -5.20 kcal Atomic # 7 Polarization: -62.91 SS G_CDS: 0.06 Total: -62.85 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.09 Total: -9.11 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.83 kcal Atomic # 16 Polarization: 1.59 SS G_CDS: -2.46 Total: -0.88 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -33.88 -10.12 -44.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506951425.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.968 kcal (2) G-P(sol) polarization free energy of solvation -33.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds