Wall clock time and date at job start Tue Mar 31 2020 22:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53007 * 109.47018 * 2 1 4 4 C 1.53003 * 109.47353 * 119.99274 * 2 1 3 5 5 C 1.50696 * 109.47400 * 175.00215 * 4 2 1 6 6 N 1.28643 * 124.72281 * 90.00449 * 5 4 2 7 7 C 1.33560 * 115.77275 * 179.97438 * 6 5 4 8 8 C 1.47266 * 123.14271 * 179.97438 * 7 6 5 9 9 O 1.21637 * 119.99682 * 179.97438 * 8 7 6 10 10 N 1.34773 * 120.00104 * 359.97438 * 8 7 6 11 11 C 1.46500 * 119.99910 * 179.97438 * 10 8 7 12 12 H 1.09001 * 109.47297 * 34.99871 * 11 10 8 13 13 C 1.53006 * 109.46998 * 275.00232 * 11 10 8 14 14 C 1.52997 * 109.47007 * 155.00372 * 11 10 8 15 15 C 1.53001 * 109.46997 * 294.99685 * 14 11 10 16 16 C 1.52997 * 109.46997 * 179.97438 * 15 14 11 17 17 N 1.46503 * 109.47269 * 180.02562 * 16 15 14 18 18 C 1.36937 * 120.00090 * 180.02562 * 17 16 15 19 19 H 1.08000 * 119.99760 * 359.97438 * 18 17 16 20 20 C 1.38809 * 119.99862 * 180.02562 * 18 17 16 21 21 N 1.31623 * 120.00010 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00117 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47429 * 59.99240 * 22 20 18 24 24 H 1.48499 * 109.47258 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.46736 * 299.99397 * 22 20 18 26 26 C 1.35205 * 113.70996 * 0.26702 * 7 6 5 27 27 S 1.70778 * 124.71946 * 269.96410 * 5 4 2 28 28 H 1.08995 * 109.47770 * 300.00249 * 1 2 3 29 29 H 1.09005 * 109.47555 * 60.00602 * 1 2 3 30 30 H 1.09009 * 109.46933 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47770 * 239.99751 * 2 1 3 32 32 H 1.08995 * 109.47053 * 59.99312 * 3 2 1 33 33 H 1.08996 * 109.46951 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.46304 * 299.99543 * 3 2 1 35 35 H 1.09009 * 109.46703 * 55.00151 * 4 2 1 36 36 H 1.08997 * 109.47013 * 295.00683 * 4 2 1 37 37 H 0.96995 * 119.99797 * 0.02562 * 10 8 7 38 38 H 1.09001 * 109.47002 * 179.97438 * 13 11 10 39 39 H 1.08993 * 109.46955 * 300.00226 * 13 11 10 40 40 H 1.09000 * 109.47050 * 60.00054 * 13 11 10 41 41 H 1.08993 * 109.47322 * 54.99986 * 14 11 10 42 42 H 1.09002 * 109.47196 * 175.00109 * 14 11 10 43 43 H 1.08993 * 109.47331 * 300.00296 * 15 14 11 44 44 H 1.09001 * 109.46791 * 60.00740 * 15 14 11 45 45 H 1.09006 * 109.47271 * 300.00048 * 16 15 14 46 46 H 1.09002 * 109.47196 * 60.00425 * 16 15 14 47 47 H 0.97002 * 119.99507 * 0.02562 * 17 16 15 48 48 H 0.97003 * 120.00079 * 180.02562 * 21 20 18 49 49 H 1.08005 * 125.58165 * 179.73787 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5419 -0.8292 1.1890 6 7 4.3590 0.0458 1.6597 7 6 5.6568 -0.2314 1.5092 8 6 6.7304 0.6567 1.9860 9 8 7.8948 0.3473 1.8188 10 7 6.4228 1.8122 2.6077 11 6 7.4908 2.6954 3.0826 12 1 8.3318 2.6533 2.3905 13 6 7.9490 2.2413 4.4700 14 6 6.9676 4.1309 3.1628 15 6 6.6261 4.6285 1.7569 16 6 6.1023 6.0638 1.8372 17 7 5.7746 6.5402 0.4911 18 6 5.2852 7.8066 0.3132 19 1 5.1402 8.4541 1.1653 20 6 4.9743 8.2577 -0.9622 21 7 5.1504 7.4683 -2.0006 22 14 4.3072 9.9856 -1.2050 23 1 5.2978 10.9733 -0.7067 24 1 4.0576 10.2214 -2.6498 25 1 3.0363 10.1359 -0.4517 26 6 5.8927 -1.4005 0.8724 27 16 4.3960 -2.1309 0.4872 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8901 30 1 -0.3633 -1.0278 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.6765 1.9564 0.8899 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9563 -0.8901 35 1 1.6053 -1.7197 1.2953 36 1 1.7515 -0.1581 2.1370 37 1 5.4942 2.0587 2.7414 38 1 8.7440 2.8981 4.8232 39 1 7.1081 2.2833 5.1621 40 1 8.3217 1.2186 4.4129 41 1 6.0730 4.1574 3.7849 42 1 7.7329 4.7727 3.5994 43 1 7.5206 4.6021 1.1348 44 1 5.8607 3.9868 1.3203 45 1 5.2075 6.0898 2.4592 46 1 6.8672 6.7059 2.2740 47 1 5.9045 5.9584 -0.2742 48 1 4.9335 7.7837 -2.8919 49 1 6.8673 -1.8076 0.6464 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506951425.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:54 Heat of formation + Delta-G solvation = -37.785256 kcal Electronic energy + Delta-G solvation = -27040.472716 eV Core-core repulsion = 23320.510404 eV Total energy + Delta-G solvation = -3719.962312 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.64383 -40.08664 -38.02506 -37.21034 -36.53924 -34.21395 -32.70820 -32.00971 -30.84978 -28.81831 -27.96243 -27.29037 -26.36431 -24.75951 -23.02129 -22.37498 -21.73030 -21.12331 -20.90612 -19.67935 -19.13378 -17.70248 -17.28825 -16.70556 -16.56949 -16.48248 -15.89926 -15.73230 -15.46571 -15.33883 -15.18216 -14.92101 -14.74106 -14.53841 -14.28992 -13.83772 -13.48522 -13.36173 -13.22812 -13.06425 -13.03195 -12.96741 -12.75026 -12.70992 -12.43644 -12.30162 -12.12070 -12.08172 -11.89294 -11.82021 -11.76485 -11.60534 -11.53845 -11.24835 -10.93944 -10.80586 -10.61922 -10.23173 -9.81078 -9.02710 -7.96558 -5.26624 -0.51986 0.24864 0.58573 0.88939 1.45462 1.49543 1.55720 2.16730 2.27962 2.54879 2.93507 3.36732 3.57747 3.71161 3.92408 3.94459 4.00819 4.05937 4.08985 4.20328 4.25290 4.31681 4.36300 4.54734 4.62760 4.65295 4.71739 4.78630 4.80247 4.82421 4.83601 4.87994 4.94431 4.96850 5.03814 5.07569 5.14461 5.27345 5.30585 5.32477 5.39003 5.43651 5.47714 5.48391 5.51052 6.25112 6.27760 6.59338 7.08408 7.30492 8.06913 8.29923 9.27124 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008210 B = 0.003060 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3409.518972 B = 9147.066362 C =11671.882160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.085 4.085 3 C -0.148 4.148 4 C -0.038 4.038 5 C 0.020 3.980 6 N -0.460 5.460 7 C -0.016 4.016 8 C 0.589 3.411 9 O -0.574 6.574 10 N -0.697 5.697 11 C 0.141 3.859 12 H 0.069 0.931 13 C -0.153 4.153 14 C -0.108 4.108 15 C -0.112 4.112 16 C 0.152 3.848 17 N -0.751 5.751 18 C -0.250 4.250 19 H 0.077 0.923 20 C -0.077 4.077 21 N -0.972 5.972 22 Si 0.977 3.023 23 H -0.277 1.277 24 H -0.294 1.294 25 H -0.275 1.275 26 C -0.243 4.243 27 S 0.286 5.714 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.054 0.946 33 H 0.034 0.966 34 H 0.045 0.955 35 H 0.119 0.881 36 H 0.096 0.904 37 H 0.413 0.587 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.044 0.956 41 H 0.084 0.916 42 H 0.097 0.903 43 H 0.047 0.953 44 H 0.049 0.951 45 H 0.023 0.977 46 H 0.023 0.977 47 H 0.370 0.630 48 H 0.251 0.749 49 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.527 -24.708 10.658 27.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.105 4.105 3 C -0.206 4.206 4 C -0.079 4.079 5 C -0.259 4.259 6 N -0.175 5.175 7 C -0.151 4.151 8 C 0.373 3.627 9 O -0.455 6.455 10 N -0.347 5.347 11 C 0.037 3.963 12 H 0.087 0.913 13 C -0.211 4.211 14 C -0.147 4.147 15 C -0.150 4.150 16 C 0.026 3.974 17 N -0.393 5.393 18 C -0.382 4.382 19 H 0.095 0.905 20 C -0.269 4.269 21 N -0.623 5.623 22 Si 0.805 3.195 23 H -0.203 1.203 24 H -0.220 1.220 25 H -0.201 1.201 26 C -0.386 4.386 27 S 0.545 5.455 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.073 0.927 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.138 0.862 36 H 0.115 0.885 37 H 0.250 0.750 38 H 0.103 0.897 39 H 0.089 0.911 40 H 0.063 0.937 41 H 0.103 0.897 42 H 0.116 0.884 43 H 0.066 0.934 44 H 0.068 0.932 45 H 0.041 0.959 46 H 0.041 0.959 47 H 0.202 0.798 48 H 0.060 0.940 49 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -6.246 -25.157 10.416 27.935 hybrid contribution 0.486 1.720 -0.535 1.866 sum -5.760 -23.437 9.881 26.079 Atomic orbital electron populations 1.21805 0.92906 1.03064 1.02284 1.21097 0.97127 0.95116 0.97171 1.21844 1.00204 0.97058 1.01473 1.20574 0.82929 1.04033 1.00317 1.27592 1.02604 0.94728 1.00961 1.66913 1.00350 1.29871 1.20396 1.20316 0.90988 0.97010 1.06776 1.17402 0.86806 0.81297 0.77157 1.90767 1.20373 1.75013 1.59319 1.45944 1.11387 1.19891 1.57479 1.21102 0.89714 0.88933 0.96588 0.91298 1.22090 1.02417 1.01409 0.95159 1.21752 1.03113 0.93816 0.95975 1.21576 1.00085 0.95338 0.98025 1.20830 0.96651 0.93520 0.86409 1.42644 1.78184 1.14180 1.04282 1.19655 1.34025 0.91548 0.92981 0.90481 1.25638 1.03414 1.02528 0.95313 1.69837 1.56262 1.37839 0.98320 0.85161 0.78519 0.79489 0.76301 1.20252 1.22030 1.20097 1.26858 1.07450 0.99836 1.04426 1.82472 0.91661 1.20711 1.50684 0.92247 0.92727 0.90452 0.90649 0.92671 0.94636 0.93541 0.86247 0.88530 0.75035 0.89674 0.91124 0.93683 0.89699 0.88430 0.93435 0.93220 0.95866 0.95904 0.79840 0.93988 0.79180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.19 71.98 0.66 -0.95 16 2 C -0.09 -1.24 2.91 -10.79 -0.03 -1.27 16 3 C -0.15 -3.33 8.99 71.98 0.65 -2.69 16 4 C -0.04 -0.47 5.26 29.85 0.16 -0.31 16 5 C 0.02 0.36 5.84 88.57 0.52 0.88 16 6 N -0.46 -10.97 9.34 -180.84 -1.69 -12.66 16 7 C -0.02 -0.41 6.70 40.56 0.27 -0.14 16 8 C 0.59 17.96 7.76 86.62 0.67 18.63 16 9 O -0.57 -20.55 16.38 -4.15 -0.07 -20.62 16 10 N -0.70 -18.77 4.53 -445.93 -2.02 -20.78 16 11 C 0.14 3.53 2.57 44.99 0.12 3.65 16 12 H 0.07 2.04 7.58 -2.39 -0.02 2.02 16 13 C -0.15 -3.11 9.48 71.98 0.68 -2.43 16 14 C -0.11 -2.65 4.75 30.59 0.15 -2.50 16 15 C -0.11 -3.82 5.22 30.59 0.16 -3.66 16 16 C 0.15 6.30 6.26 86.38 0.54 6.84 16 17 N -0.75 -40.49 5.60 -343.44 -1.92 -42.42 16 18 C -0.25 -14.57 9.99 84.03 0.84 -13.73 16 19 H 0.08 4.26 7.83 -2.91 -0.02 4.23 16 20 C -0.08 -4.56 5.50 84.86 0.47 -4.10 16 21 N -0.97 -61.60 13.06 21.65 0.28 -61.32 16 22 Si 0.98 47.09 29.55 68.60 2.03 49.11 16 23 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 24 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 25 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 26 C -0.24 -5.16 10.62 67.12 0.71 -4.45 16 27 S 0.29 3.93 22.92 -56.49 -1.29 2.64 16 28 H 0.06 0.67 8.14 -2.39 -0.02 0.66 16 29 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 30 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16 31 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.03 0.96 6.79 -2.39 -0.02 0.94 16 34 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.12 0.70 8.14 -2.38 -0.02 0.68 16 36 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.41 10.52 8.12 -92.71 -0.75 9.77 16 38 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.07 1.25 8.14 -2.39 -0.02 1.24 16 40 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.05 1.80 7.75 -2.39 -0.02 1.78 16 45 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 46 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 47 H 0.37 21.48 7.67 -92.71 -0.71 20.77 16 48 H 0.25 15.40 8.31 -92.71 -0.77 14.63 16 49 H 0.19 3.76 8.03 -2.91 -0.02 3.74 16 Total: -1.00 -75.02 416.11 1.35 -73.67 By element: Atomic # 1 Polarization: 39.13 SS G_CDS: -0.52 Total: 38.61 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: 6.56 Total: -6.23 kcal Atomic # 7 Polarization: -131.83 SS G_CDS: -5.35 Total: -137.18 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -0.07 Total: -20.62 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.11 kcal Atomic # 16 Polarization: 3.93 SS G_CDS: -1.29 Total: 2.64 kcal Total: -75.02 1.35 -73.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506951425.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.880 kcal (2) G-P(sol) polarization free energy of solvation -75.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds