Wall clock time and date at job start Tue Mar 31 2020 22:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.46562 * 2 1 4 4 C 1.52995 * 109.47215 * 119.99819 * 2 1 3 5 5 N 1.46498 * 109.47220 * 175.00439 * 4 2 1 6 6 C 1.46500 * 119.99580 * 270.00373 * 5 4 2 7 7 C 1.36936 * 120.00234 * 89.99837 * 5 4 2 8 8 H 1.07997 * 120.00074 * 23.83279 * 7 5 4 9 9 C 1.38810 * 119.99982 * 203.83746 * 7 5 4 10 10 N 1.31622 * 119.99895 * 10.85978 * 9 7 5 11 11 Si 1.86804 * 119.99853 * 190.86883 * 9 7 5 12 12 H 1.48503 * 109.47058 * 89.99737 * 11 9 7 13 13 H 1.48504 * 109.46776 * 209.99600 * 11 9 7 14 14 H 1.48492 * 109.46741 * 329.99242 * 11 9 7 15 15 N 1.46497 * 109.47229 * 240.00124 * 2 1 3 16 16 C 1.34782 * 120.00147 * 84.99477 * 15 2 1 17 17 O 1.21279 * 119.99470 * 0.02562 * 16 15 2 18 18 C 1.50700 * 119.99962 * 179.97438 * 16 15 2 19 19 H 1.09003 * 109.46647 * 60.00496 * 18 16 15 20 20 C 1.52996 * 109.47352 * 300.00239 * 18 16 15 21 21 N 1.46502 * 109.46986 * 180.02562 * 18 16 15 22 22 C 1.34768 * 119.99893 * 205.00438 * 21 18 16 23 23 O 1.21282 * 120.00312 * 359.97438 * 22 21 18 24 24 C 1.50704 * 120.00026 * 180.02562 * 22 21 18 25 25 N 1.46497 * 109.47075 * 179.97438 * 24 22 21 26 26 C 1.34604 * 126.43959 * 125.00419 * 25 24 22 27 27 N 1.31063 * 106.67904 * 179.97438 * 26 25 24 28 28 N 1.28841 * 107.99584 * 359.97438 * 27 26 25 29 29 N 1.28737 * 109.39399 * 359.97438 * 28 27 26 30 30 H 1.08994 * 109.47339 * 60.00105 * 1 2 3 31 31 H 1.09003 * 109.46745 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47203 * 299.99883 * 1 2 3 33 33 H 1.09000 * 109.47389 * 295.00118 * 4 2 1 34 34 H 1.09001 * 109.47290 * 55.00070 * 4 2 1 35 35 H 1.09000 * 109.47378 * 94.93785 * 6 5 4 36 36 H 1.09002 * 109.46926 * 214.93589 * 6 5 4 37 37 H 1.09000 * 109.47232 * 334.93439 * 6 5 4 38 38 H 0.97002 * 119.99572 * 180.02562 * 10 9 7 39 39 H 0.97001 * 120.00089 * 265.00051 * 15 2 1 40 40 H 1.09005 * 109.47085 * 59.99501 * 20 18 16 41 41 H 1.08993 * 109.47191 * 180.02562 * 20 18 16 42 42 H 1.08998 * 109.47100 * 300.00409 * 20 18 16 43 43 H 0.97000 * 119.99718 * 24.99913 * 21 18 16 44 44 H 1.09002 * 109.47262 * 59.99663 * 24 22 21 45 45 H 1.09004 * 109.46853 * 299.99382 * 24 22 21 46 46 H 1.08003 * 126.65696 * 359.70379 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5001 -0.8262 1.1906 6 6 4.1259 -1.9918 0.5612 7 6 4.2799 0.1650 1.7240 8 1 3.8846 0.8050 2.4989 9 6 5.5784 0.3474 1.2686 10 7 5.9910 -0.2803 0.1878 11 14 6.7404 1.4834 2.1899 12 1 7.4756 0.7086 3.2217 13 1 7.7090 2.0804 1.2356 14 1 5.9604 2.5641 2.8446 15 7 2.0184 -0.6906 -1.1962 16 6 2.1471 -0.0182 -2.3572 17 8 1.8590 1.1586 -2.4115 18 6 2.6500 -0.7285 -3.5875 19 1 1.9777 -1.5508 -3.8325 20 6 4.0527 -1.2784 -3.3214 21 7 2.6996 0.2130 -4.7089 22 6 2.6209 -0.2423 -5.9749 23 8 2.5094 -1.4314 -6.1859 24 6 2.6725 0.7261 -7.1284 25 7 2.5694 -0.0113 -8.3901 26 6 1.6680 0.1986 -9.3674 27 7 1.9273 -0.6725 -10.3117 28 7 2.9357 -1.3802 -9.9344 29 7 3.3267 -0.9828 -8.7741 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.7517 -0.1583 2.1370 34 1 1.6055 -1.7198 1.2952 35 1 4.3599 -1.7616 -0.4782 36 1 5.0435 -2.2430 1.0931 37 1 3.4399 -2.8379 0.6004 38 1 6.8985 -0.1531 -0.1302 39 1 2.2491 -1.6317 -1.1526 40 1 4.0162 -1.9787 -2.4869 41 1 4.4166 -1.7917 -4.2114 42 1 4.7248 -0.4560 -3.0763 43 1 2.7891 1.1640 -4.5400 44 1 3.6159 1.2717 -7.1029 45 1 1.8437 1.4296 -7.0496 46 1 0.8809 0.9381 -9.3707 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569145507.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:22 Heat of formation + Delta-G solvation = 80.439326 kcal Electronic energy + Delta-G solvation = -30165.123261 eV Core-core repulsion = 25936.287089 eV Total energy + Delta-G solvation = -4228.836172 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.38226 -40.48269 -39.26241 -36.64138 -35.78641 -35.01520 -34.15321 -32.68951 -32.04215 -30.96773 -30.03803 -28.77294 -26.29334 -25.73270 -24.73144 -24.05426 -23.57438 -21.93066 -20.97248 -20.41165 -19.99221 -18.54574 -18.09589 -17.04319 -16.93243 -16.48732 -16.19509 -15.98264 -15.71249 -15.31608 -14.96764 -14.52490 -14.15301 -13.93953 -13.68803 -13.53724 -13.30649 -13.00228 -12.91567 -12.48659 -12.37490 -12.32865 -12.17661 -11.92790 -11.53762 -11.48372 -11.40625 -11.34770 -11.19311 -10.92460 -10.87985 -10.65586 -10.62628 -10.30605 -10.21918 -10.04141 -9.94878 -9.65564 -9.28498 -8.72073 -8.52794 -6.84124 -5.81743 -3.28473 0.99164 1.51939 2.07319 2.10545 2.62826 2.90618 3.32136 3.39447 3.39648 3.59521 3.80758 3.93468 4.16196 4.33816 4.42464 4.53282 4.85363 5.13660 5.15821 5.19094 5.24616 5.39230 5.43223 5.55660 5.69259 5.75167 5.76257 5.88082 5.96116 5.99787 6.12387 6.17178 6.35946 6.41657 6.45911 6.55006 6.74901 6.96793 7.12257 7.23100 7.57872 7.72331 7.73451 7.90347 8.30139 8.40291 8.52221 9.14111 9.75873 10.24087 11.22750 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.015827 B = 0.002627 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.664519 B =10654.829858 C =11519.819831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.117 3.883 3 H 0.087 0.913 4 C 0.142 3.858 5 N -0.597 5.597 6 C 0.157 3.843 7 C -0.256 4.256 8 H 0.067 0.933 9 C 0.007 3.993 10 N -0.903 5.903 11 Si 0.903 3.097 12 H -0.289 1.289 13 H -0.292 1.292 14 H -0.280 1.280 15 N -0.688 5.688 16 C 0.517 3.483 17 O -0.552 6.552 18 C 0.128 3.872 19 H 0.109 0.891 20 C -0.155 4.155 21 N -0.699 5.699 22 C 0.504 3.496 23 O -0.514 6.514 24 C 0.096 3.904 25 N -0.299 5.299 26 C 0.159 3.841 27 N -0.308 5.308 28 N -0.080 5.080 29 N -0.060 5.060 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.042 0.958 35 H 0.036 0.964 36 H 0.043 0.957 37 H -0.006 1.006 38 H 0.251 0.749 39 H 0.398 0.602 40 H 0.080 0.920 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.413 0.587 44 H 0.139 0.861 45 H 0.146 0.854 46 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.232 2.896 -10.493 14.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.010 3.990 3 H 0.105 0.895 4 C 0.014 3.986 5 N -0.319 5.319 6 C 0.013 3.987 7 C -0.386 4.386 8 H 0.085 0.915 9 C -0.192 4.192 10 N -0.547 5.547 11 Si 0.734 3.266 12 H -0.216 1.216 13 H -0.218 1.218 14 H -0.206 1.206 15 N -0.337 5.337 16 C 0.302 3.698 17 O -0.431 6.431 18 C 0.020 3.980 19 H 0.126 0.874 20 C -0.213 4.213 21 N -0.353 5.353 22 C 0.287 3.713 23 O -0.388 6.388 24 C -0.030 4.030 25 N -0.102 5.102 26 C -0.140 4.140 27 N -0.156 5.156 28 N -0.074 5.074 29 N -0.047 5.047 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.061 0.939 37 H 0.013 0.987 38 H 0.061 0.939 39 H 0.232 0.768 40 H 0.099 0.901 41 H 0.084 0.916 42 H 0.093 0.907 43 H 0.250 0.750 44 H 0.156 0.844 45 H 0.164 0.836 46 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -9.617 1.777 -11.306 14.949 hybrid contribution 0.428 1.600 1.161 2.023 sum -9.189 3.377 -10.145 14.098 Atomic orbital electron populations 1.22156 0.96767 1.01205 1.01731 1.21924 0.91681 0.99195 0.86189 0.89489 1.21205 0.85879 0.97279 0.94270 1.43875 0.98981 1.20874 1.68165 1.20934 0.94615 0.85053 0.98123 1.19157 0.94743 1.10557 1.14108 0.91524 1.25003 0.98813 0.98995 0.96364 1.70013 1.17203 1.45422 1.22101 0.86278 0.80927 0.80497 0.78919 1.21578 1.21811 1.20596 1.45713 1.65148 1.13854 1.08998 1.20214 0.77585 0.87246 0.84779 1.90634 1.51618 1.15756 1.85137 1.20862 1.00222 0.92083 0.84811 0.87375 1.22103 0.93923 1.02593 1.02702 1.45570 1.73617 1.11994 1.04110 1.20037 0.78015 0.89411 0.83884 1.90854 1.47888 1.15786 1.84276 1.21998 1.08764 0.93561 0.78642 1.48163 1.21774 1.24092 1.16128 1.27743 0.97931 1.02643 0.85636 1.74984 1.11013 1.05353 1.24202 1.78687 1.06655 1.18840 1.03234 1.79050 1.16277 1.00407 1.08927 0.93046 0.93113 0.91958 0.92200 0.93963 0.94582 0.93854 0.98724 0.93880 0.76776 0.90113 0.91582 0.90689 0.74968 0.84351 0.83643 0.74857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 9.49 37.16 0.35 -1.79 16 2 C 0.12 1.96 2.88 -67.93 -0.20 1.76 16 3 H 0.09 1.78 7.58 -51.93 -0.39 1.38 16 4 C 0.14 2.51 5.33 -4.05 -0.02 2.49 16 5 N -0.60 -13.21 2.78 -181.12 -0.50 -13.71 16 6 C 0.16 3.36 7.59 59.85 0.45 3.81 16 7 C -0.26 -6.49 9.66 -15.06 -0.15 -6.64 16 8 H 0.07 1.69 7.85 -52.49 -0.41 1.27 16 9 C 0.01 0.18 5.14 -17.43 -0.09 0.09 16 10 N -0.90 -23.95 10.64 55.49 0.59 -23.36 16 11 Si 0.90 20.99 29.57 -169.99 -5.03 15.96 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 14 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 15 N -0.69 -10.89 4.31 -53.81 -0.23 -11.12 16 16 C 0.52 8.23 7.19 -10.98 -0.08 8.15 16 17 O -0.55 -10.08 15.50 5.56 0.09 -9.99 16 18 C 0.13 1.71 2.98 -69.08 -0.21 1.50 16 19 H 0.11 1.40 7.58 -51.93 -0.39 1.00 16 20 C -0.15 -2.23 9.38 37.16 0.35 -1.89 16 21 N -0.70 -7.62 4.95 -54.93 -0.27 -7.89 16 22 C 0.50 5.33 7.81 -10.99 -0.09 5.24 16 23 O -0.51 -7.74 15.36 5.56 0.09 -7.65 16 24 C 0.10 0.56 6.97 -5.19 -0.04 0.52 16 25 N -0.30 -2.83 3.19 -63.73 -0.20 -3.04 16 26 C 0.16 1.26 12.79 -90.39 -1.16 0.11 16 27 N -0.31 -3.83 12.36 29.59 0.37 -3.46 16 28 N -0.08 -1.19 13.43 60.35 0.81 -0.38 16 29 N -0.06 -0.83 12.29 60.35 0.74 -0.09 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.06 1.04 8.03 -51.93 -0.42 0.63 16 34 H 0.04 0.66 7.86 -51.93 -0.41 0.25 16 35 H 0.04 0.79 5.58 -51.93 -0.29 0.50 16 36 H 0.04 1.04 7.33 -51.93 -0.38 0.66 16 37 H -0.01 -0.10 7.84 -51.93 -0.41 -0.51 16 38 H 0.25 6.62 8.31 -40.82 -0.34 6.28 16 39 H 0.40 5.87 6.60 -40.82 -0.27 5.60 16 40 H 0.08 1.20 6.24 -51.93 -0.32 0.87 16 41 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.41 4.02 7.79 -40.82 -0.32 3.70 16 44 H 0.14 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.15 0.16 8.08 -51.93 -0.42 -0.26 16 46 H 0.24 0.44 8.06 -52.48 -0.42 0.02 16 LS Contribution 386.48 15.07 5.82 5.82 Total: -1.00 -35.71 386.48 -5.12 -40.83 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -6.53 Total: 4.72 kcal Atomic # 6 Polarization: 14.23 SS G_CDS: -0.86 Total: 13.37 kcal Atomic # 7 Polarization: -64.35 SS G_CDS: 1.30 Total: -63.06 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: 0.17 Total: -17.65 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.96 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.71 -5.12 -40.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569145507.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.267 kcal (2) G-P(sol) polarization free energy of solvation -35.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds