Wall clock time and date at job start Tue Mar 31 2020 22:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.46562 * 2 1 4 4 C 1.52995 * 109.47215 * 119.99819 * 2 1 3 5 5 N 1.46498 * 109.47220 * 175.00439 * 4 2 1 6 6 C 1.46500 * 119.99580 * 270.00373 * 5 4 2 7 7 C 1.36936 * 120.00234 * 89.99837 * 5 4 2 8 8 H 1.07997 * 120.00074 * 23.83279 * 7 5 4 9 9 C 1.38810 * 119.99982 * 203.83746 * 7 5 4 10 10 N 1.31622 * 119.99895 * 10.85978 * 9 7 5 11 11 Si 1.86804 * 119.99853 * 190.86883 * 9 7 5 12 12 H 1.48503 * 109.47058 * 89.99737 * 11 9 7 13 13 H 1.48504 * 109.46776 * 209.99600 * 11 9 7 14 14 H 1.48492 * 109.46741 * 329.99242 * 11 9 7 15 15 N 1.46497 * 109.47229 * 240.00124 * 2 1 3 16 16 C 1.34782 * 120.00147 * 84.99477 * 15 2 1 17 17 O 1.21279 * 119.99470 * 0.02562 * 16 15 2 18 18 C 1.50700 * 119.99962 * 179.97438 * 16 15 2 19 19 H 1.09003 * 109.46647 * 60.00496 * 18 16 15 20 20 C 1.52996 * 109.47352 * 300.00239 * 18 16 15 21 21 N 1.46502 * 109.46986 * 180.02562 * 18 16 15 22 22 C 1.34768 * 119.99893 * 205.00438 * 21 18 16 23 23 O 1.21282 * 120.00312 * 359.97438 * 22 21 18 24 24 C 1.50704 * 120.00026 * 180.02562 * 22 21 18 25 25 N 1.46497 * 109.47075 * 179.97438 * 24 22 21 26 26 C 1.34604 * 126.43959 * 125.00419 * 25 24 22 27 27 N 1.31063 * 106.67904 * 179.97438 * 26 25 24 28 28 N 1.28841 * 107.99584 * 359.97438 * 27 26 25 29 29 N 1.28737 * 109.39399 * 359.97438 * 28 27 26 30 30 H 1.08994 * 109.47339 * 60.00105 * 1 2 3 31 31 H 1.09003 * 109.46745 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47203 * 299.99883 * 1 2 3 33 33 H 1.09000 * 109.47389 * 295.00118 * 4 2 1 34 34 H 1.09001 * 109.47290 * 55.00070 * 4 2 1 35 35 H 1.09000 * 109.47378 * 94.93785 * 6 5 4 36 36 H 1.09002 * 109.46926 * 214.93589 * 6 5 4 37 37 H 1.09000 * 109.47232 * 334.93439 * 6 5 4 38 38 H 0.97002 * 119.99572 * 180.02562 * 10 9 7 39 39 H 0.97001 * 120.00089 * 265.00051 * 15 2 1 40 40 H 1.09005 * 109.47085 * 59.99501 * 20 18 16 41 41 H 1.08993 * 109.47191 * 180.02562 * 20 18 16 42 42 H 1.08998 * 109.47100 * 300.00409 * 20 18 16 43 43 H 0.97000 * 119.99718 * 24.99913 * 21 18 16 44 44 H 1.09002 * 109.47262 * 59.99663 * 24 22 21 45 45 H 1.09004 * 109.46853 * 299.99382 * 24 22 21 46 46 H 1.08003 * 126.65696 * 359.70379 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5001 -0.8262 1.1906 6 6 4.1259 -1.9918 0.5612 7 6 4.2799 0.1650 1.7240 8 1 3.8846 0.8050 2.4989 9 6 5.5784 0.3474 1.2686 10 7 5.9910 -0.2803 0.1878 11 14 6.7404 1.4834 2.1899 12 1 7.4756 0.7086 3.2217 13 1 7.7090 2.0804 1.2356 14 1 5.9604 2.5641 2.8446 15 7 2.0184 -0.6906 -1.1962 16 6 2.1471 -0.0182 -2.3572 17 8 1.8590 1.1586 -2.4115 18 6 2.6500 -0.7285 -3.5875 19 1 1.9777 -1.5508 -3.8325 20 6 4.0527 -1.2784 -3.3214 21 7 2.6996 0.2130 -4.7089 22 6 2.6209 -0.2423 -5.9749 23 8 2.5094 -1.4314 -6.1859 24 6 2.6725 0.7261 -7.1284 25 7 2.5694 -0.0113 -8.3901 26 6 1.6680 0.1986 -9.3674 27 7 1.9273 -0.6725 -10.3117 28 7 2.9357 -1.3802 -9.9344 29 7 3.3267 -0.9828 -8.7741 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.7517 -0.1583 2.1370 34 1 1.6055 -1.7198 1.2952 35 1 4.3599 -1.7616 -0.4782 36 1 5.0435 -2.2430 1.0931 37 1 3.4399 -2.8379 0.6004 38 1 6.8985 -0.1531 -0.1302 39 1 2.2491 -1.6317 -1.1526 40 1 4.0162 -1.9787 -2.4869 41 1 4.4166 -1.7917 -4.2114 42 1 4.7248 -0.4560 -3.0763 43 1 2.7891 1.1640 -4.5400 44 1 3.6159 1.2717 -7.1029 45 1 1.8437 1.4296 -7.0496 46 1 0.8809 0.9381 -9.3707 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569145507.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:21 Heat of formation + Delta-G solvation = 52.952299 kcal Electronic energy + Delta-G solvation = -30166.315188 eV Core-core repulsion = 25936.287089 eV Total energy + Delta-G solvation = -4230.028099 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -45.16294 -41.53221 -40.40007 -38.11157 -36.63482 -36.08108 -35.69582 -33.53242 -33.31878 -32.52944 -31.19809 -29.60664 -27.95344 -27.36945 -25.88261 -24.84555 -24.45265 -23.40731 -22.14149 -21.58672 -21.24885 -19.48531 -18.79233 -18.71848 -17.91827 -17.54647 -17.21715 -16.93278 -16.77672 -16.60965 -16.29428 -15.76347 -15.47965 -15.26850 -14.97051 -14.79220 -14.50265 -14.39524 -13.81557 -13.71262 -13.56097 -13.46100 -13.25075 -13.13566 -13.01364 -12.83297 -12.70690 -12.60387 -12.51721 -12.27031 -12.21511 -12.13012 -12.01131 -11.79720 -11.65661 -11.49476 -11.09795 -10.86398 -10.59563 -10.34843 -9.92671 -8.66858 -7.77135 -5.23549 0.26914 0.93003 1.26294 1.31353 1.45527 1.48215 1.53984 1.60217 1.81430 2.44054 2.53742 3.21307 3.36326 3.48312 3.53115 3.64842 3.76858 3.97712 4.02104 4.02975 4.06509 4.21212 4.39559 4.44187 4.56061 4.60324 4.71599 4.75038 4.79371 4.87417 4.93084 5.04109 5.12886 5.19433 5.20166 5.23083 5.41448 5.42338 5.68614 5.70587 5.86761 6.27936 6.38837 6.59358 6.95791 7.22687 7.25776 7.58569 7.93879 8.35088 9.23604 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.015827 B = 0.002627 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.664519 B =10654.829858 C =11519.819831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.125 3.875 3 H 0.045 0.955 4 C 0.141 3.859 5 N -0.610 5.610 6 C 0.168 3.832 7 C -0.258 4.258 8 H 0.064 0.936 9 C -0.043 4.043 10 N -0.920 5.920 11 Si 0.953 3.047 12 H -0.290 1.290 13 H -0.300 1.300 14 H -0.275 1.275 15 N -0.688 5.688 16 C 0.514 3.486 17 O -0.577 6.577 18 C 0.139 3.861 19 H 0.116 0.884 20 C -0.141 4.141 21 N -0.694 5.694 22 C 0.504 3.496 23 O -0.562 6.562 24 C 0.098 3.902 25 N -0.299 5.299 26 C 0.186 3.814 27 N -0.346 5.346 28 N -0.118 5.118 29 N -0.097 5.097 30 H 0.043 0.957 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.026 0.974 36 H 0.008 0.992 37 H 0.031 0.969 38 H 0.243 0.757 39 H 0.404 0.596 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.048 0.952 43 H 0.420 0.580 44 H 0.167 0.833 45 H 0.205 0.795 46 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.401 4.099 -10.477 16.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.018 3.982 3 H 0.063 0.937 4 C 0.014 3.986 5 N -0.333 5.333 6 C 0.023 3.977 7 C -0.388 4.388 8 H 0.081 0.919 9 C -0.239 4.239 10 N -0.566 5.566 11 Si 0.784 3.216 12 H -0.218 1.218 13 H -0.227 1.227 14 H -0.200 1.200 15 N -0.337 5.337 16 C 0.300 3.700 17 O -0.458 6.458 18 C 0.030 3.970 19 H 0.134 0.866 20 C -0.200 4.200 21 N -0.349 5.349 22 C 0.289 3.711 23 O -0.440 6.440 24 C -0.026 4.026 25 N -0.101 5.101 26 C -0.112 4.112 27 N -0.194 5.194 28 N -0.113 5.113 29 N -0.084 5.084 30 H 0.062 0.938 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.044 0.956 36 H 0.027 0.973 37 H 0.049 0.951 38 H 0.052 0.948 39 H 0.239 0.761 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.067 0.933 43 H 0.259 0.741 44 H 0.185 0.815 45 H 0.222 0.778 46 H 0.311 0.689 Dipole moment (debyes) X Y Z Total from point charges -11.811 2.996 -11.267 16.596 hybrid contribution 1.011 1.265 1.247 2.044 sum -10.800 4.262 -10.021 15.337 Atomic orbital electron populations 1.22027 0.93701 1.02738 1.02087 1.21681 0.93909 0.96653 0.85990 0.93689 1.21368 0.83319 0.99160 0.94770 1.44036 1.00765 1.20393 1.68073 1.20749 0.94095 0.86025 0.96824 1.19380 0.95193 1.10556 1.13712 0.91856 1.25575 1.00214 1.00724 0.97384 1.70146 1.16766 1.46625 1.23085 0.85477 0.79254 0.79207 0.77682 1.21775 1.22653 1.20027 1.45731 1.65010 1.14120 1.08856 1.20597 0.77041 0.87001 0.85387 1.90613 1.52721 1.16811 1.85630 1.20626 0.99173 0.92538 0.84634 0.86628 1.21936 0.94222 1.01406 1.02415 1.45523 1.73535 1.11937 1.03880 1.20817 0.76254 0.89579 0.84462 1.90846 1.50006 1.18208 1.84913 1.22467 1.12892 0.92183 0.75019 1.48393 1.21268 1.23276 1.17181 1.28812 0.97248 1.01542 0.83599 1.74879 1.11309 1.06860 1.26343 1.78649 1.08128 1.20399 1.04095 1.78963 1.18033 1.02351 1.09072 0.93758 0.90921 0.90556 0.91882 0.90951 0.95612 0.97325 0.95068 0.94770 0.76075 0.90724 0.91459 0.93266 0.74078 0.81546 0.77775 0.68878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 9.49 71.98 0.68 -2.87 16 2 C 0.13 4.01 2.88 44.99 0.13 4.14 16 3 H 0.04 1.84 7.58 -2.39 -0.02 1.82 16 4 C 0.14 4.70 5.33 86.38 0.46 5.16 16 5 N -0.61 -26.59 2.78 -726.95 -2.02 -28.61 16 6 C 0.17 7.08 7.59 127.77 0.97 8.05 16 7 C -0.26 -13.07 9.66 84.03 0.81 -12.25 16 8 H 0.06 3.19 7.85 -2.91 -0.02 3.17 16 9 C -0.04 -2.25 5.14 84.86 0.44 -1.82 16 10 N -0.92 -49.79 10.64 21.65 0.23 -49.56 16 11 Si 0.95 43.60 29.57 68.60 2.03 45.63 16 12 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 13 H -0.30 -13.97 7.11 99.48 0.71 -13.27 16 14 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 15 N -0.69 -21.09 4.31 -442.54 -1.91 -22.99 16 16 C 0.51 16.04 7.19 87.66 0.63 16.67 16 17 O -0.58 -20.71 15.50 -3.02 -0.05 -20.75 16 18 C 0.14 3.61 2.98 44.24 0.13 3.74 16 19 H 0.12 2.88 7.58 -2.39 -0.02 2.86 16 20 C -0.14 -4.13 9.38 71.98 0.68 -3.46 16 21 N -0.69 -14.12 4.95 -446.10 -2.21 -16.33 16 22 C 0.50 9.71 7.81 87.66 0.68 10.39 16 23 O -0.56 -16.58 15.36 -3.04 -0.05 -16.63 16 24 C 0.10 0.78 6.97 85.63 0.60 1.37 16 25 N -0.30 -4.91 3.19 -355.55 -1.13 -6.05 16 26 C 0.19 2.35 12.79 180.27 2.31 4.65 16 27 N -0.35 -8.25 12.36 -60.29 -0.74 -9.00 16 28 N -0.12 -3.56 13.43 37.01 0.50 -3.07 16 29 N -0.10 -2.66 12.29 37.02 0.46 -2.20 16 30 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.06 2.07 8.03 -2.39 -0.02 2.05 16 34 H 0.07 2.01 7.86 -2.39 -0.02 1.99 16 35 H 0.03 1.14 5.58 -2.39 -0.01 1.13 16 36 H 0.01 0.39 7.33 -2.39 -0.02 0.37 16 37 H 0.03 1.06 7.84 -2.39 -0.02 1.05 16 38 H 0.24 13.14 8.31 -92.71 -0.77 12.37 16 39 H 0.40 11.36 6.60 -92.71 -0.61 10.74 16 40 H 0.07 2.24 6.24 -2.38 -0.01 2.23 16 41 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.42 7.40 7.79 -92.71 -0.72 6.67 16 44 H 0.17 0.49 8.14 -2.39 -0.02 0.47 16 45 H 0.21 -0.80 8.08 -2.38 -0.02 -0.82 16 46 H 0.30 -0.62 8.06 -2.91 -0.02 -0.64 16 Total: -1.00 -83.14 386.48 3.31 -79.83 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -0.30 Total: 15.96 kcal Atomic # 6 Polarization: 25.26 SS G_CDS: 8.52 Total: 33.78 kcal Atomic # 7 Polarization: -130.98 SS G_CDS: -6.83 Total: -137.81 kcal Atomic # 8 Polarization: -37.29 SS G_CDS: -0.09 Total: -37.39 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -83.14 3.31 -79.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569145507.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.778 kcal (2) G-P(sol) polarization free energy of solvation -83.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds