Wall clock time and date at job start Tue Mar 31 2020 22:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99728 * 2 1 3 5 5 C 1.53001 * 109.46997 * 174.99904 * 4 2 1 6 6 C 1.52997 * 109.46997 * 179.97438 * 5 4 2 7 7 N 1.46503 * 109.47269 * 180.02562 * 6 5 4 8 8 C 1.36937 * 120.00090 * 180.02562 * 7 6 5 9 9 H 1.08000 * 119.99760 * 359.97438 * 8 7 6 10 10 C 1.38809 * 119.99862 * 180.02562 * 8 7 6 11 11 N 1.31617 * 120.00009 * 180.02562 * 10 8 7 12 12 Si 1.86802 * 120.00041 * 359.97438 * 10 8 7 13 13 H 1.48504 * 109.46835 * 90.00437 * 12 10 8 14 14 H 1.48501 * 109.47185 * 210.00297 * 12 10 8 15 15 H 1.48501 * 109.47243 * 330.00671 * 12 10 8 16 16 N 1.46500 * 109.46998 * 119.99942 * 2 1 3 17 17 C 1.34773 * 119.99910 * 275.00232 * 16 2 1 18 18 O 1.21683 * 120.00267 * 359.97438 * 17 16 2 19 19 C 1.46681 * 119.99868 * 179.97438 * 17 16 2 20 20 C 1.35662 * 126.13481 * 0.02562 * 19 17 16 21 21 N 1.30941 * 114.19583 * 179.97438 * 20 19 17 22 22 C 1.29433 * 117.36231 * 359.97438 * 21 20 19 23 23 C 1.50696 * 124.80141 * 179.97438 * 22 21 20 24 24 C 1.53008 * 109.47237 * 60.02975 * 23 22 21 25 25 C 1.52998 * 109.47246 * 180.02562 * 23 22 21 26 26 C 1.52995 * 109.47532 * 300.02653 * 23 22 21 27 27 S 1.70952 * 110.38925 * 359.72623 * 22 21 20 28 28 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 29 29 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 31 31 H 1.08993 * 109.47322 * 295.00205 * 4 2 1 32 32 H 1.09002 * 109.47196 * 55.00329 * 4 2 1 33 33 H 1.08993 * 109.47331 * 300.00296 * 5 4 2 34 34 H 1.09001 * 109.46791 * 60.00740 * 5 4 2 35 35 H 1.09006 * 109.47271 * 300.00048 * 6 5 4 36 36 H 1.09002 * 109.47196 * 60.00425 * 6 5 4 37 37 H 0.97002 * 119.99507 * 0.02562 * 7 6 5 38 38 H 0.97003 * 119.99940 * 179.97438 * 11 10 8 39 39 H 0.96995 * 120.00293 * 94.99410 * 16 2 1 40 40 H 1.08001 * 122.90122 * 359.96193 * 20 19 17 41 41 H 1.09000 * 109.46952 * 59.99041 * 24 23 22 42 42 H 1.08991 * 109.47356 * 179.97438 * 24 23 22 43 43 H 1.09008 * 109.46504 * 299.99793 * 24 23 22 44 44 H 1.09009 * 109.47075 * 60.00183 * 25 23 22 45 45 H 1.08994 * 109.47872 * 180.02562 * 25 23 22 46 46 H 1.09004 * 109.47339 * 300.00882 * 25 23 22 47 47 H 1.08998 * 109.47167 * 60.00450 * 26 23 22 48 48 H 1.09000 * 109.47514 * 179.97438 * 26 23 22 49 49 H 1.08995 * 109.47411 * 299.99926 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 6 4.0749 -1.3351 -2.5625 7 7 5.5351 -1.2323 -2.6239 8 6 6.2188 -1.8067 -3.6620 9 1 5.6817 -2.3358 -4.4353 10 6 7.6023 -1.7096 -3.7199 11 7 8.2595 -2.2612 -4.7180 12 14 8.5313 -0.7949 -2.3820 13 1 8.8914 -1.7402 -1.2948 14 1 9.7678 -0.2036 -2.9537 15 1 7.6731 0.2860 -1.8340 16 7 2.0184 -0.6906 1.1962 17 6 2.1470 -0.0182 2.3571 18 8 1.8580 1.1625 2.4117 19 6 2.6354 -0.7098 3.5549 20 6 2.9920 -2.0163 3.6348 21 7 3.3968 -2.3905 4.8226 22 6 3.4094 -1.4943 5.7564 23 6 3.8417 -1.7404 7.1789 24 6 5.2971 -2.2123 7.1953 25 6 3.7170 -0.4438 7.9814 26 6 2.9501 -2.8150 7.8042 27 16 2.8729 0.0097 5.1459 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.7517 -1.7715 -1.2055 32 1 1.6055 -0.2618 -2.1370 33 1 3.8532 0.4369 -1.3573 34 1 3.9995 -1.0729 -0.4259 35 1 3.7866 -2.3854 -2.5183 36 1 3.6404 -0.8760 -3.4505 37 1 6.0174 -0.7573 -1.9292 38 1 9.2263 -2.1931 -4.7586 39 1 2.2490 -1.6317 1.1527 40 1 2.9459 -2.6896 2.7916 41 1 5.9323 -1.4468 6.7497 42 1 5.6099 -2.3899 8.2241 43 1 5.3859 -3.1362 6.6235 44 1 2.6802 -0.1076 7.9698 45 1 4.0301 -0.6217 9.0102 46 1 4.3522 0.3218 7.5359 47 1 3.0390 -3.7388 7.2326 48 1 3.2631 -2.9934 8.8330 49 1 1.9133 -2.4789 7.7926 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571326000.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:37 Heat of formation + Delta-G solvation = -6.172502 kcal Electronic energy + Delta-G solvation = -26660.623909 eV Core-core repulsion = 22942.032429 eV Total energy + Delta-G solvation = -3718.591480 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.59916 -39.68691 -37.17667 -36.82279 -35.04479 -32.80877 -31.66974 -30.26076 -29.45895 -27.94069 -27.71875 -26.31881 -25.89812 -23.11189 -22.34595 -21.51881 -20.99379 -20.71529 -19.58185 -18.10987 -17.51224 -17.43116 -16.34958 -15.62388 -15.38005 -14.95917 -14.88357 -14.70769 -14.64725 -14.27668 -14.04559 -13.92869 -13.89065 -13.60611 -13.01596 -12.80457 -12.70147 -12.60786 -12.33869 -12.23939 -12.15870 -12.07372 -11.74594 -11.73026 -11.52294 -11.45768 -11.31896 -11.00463 -10.92328 -10.62171 -10.47536 -10.41307 -10.11124 -9.81090 -9.75813 -9.58941 -9.37055 -9.17135 -8.88807 -7.22477 -5.76526 -3.11822 -0.06585 0.82719 1.37225 2.16163 2.95870 3.00652 3.38082 3.41524 3.45652 3.51876 4.21452 4.38089 4.38733 4.54133 4.59784 4.64996 4.79397 4.86886 4.92932 5.03596 5.05975 5.13615 5.27726 5.31850 5.37141 5.38736 5.41784 5.42190 5.50546 5.53506 5.55985 5.65337 5.66718 5.81352 5.82445 5.87171 5.90404 5.96671 6.06101 6.09056 6.26772 6.31795 6.73740 6.77214 7.20957 7.28865 7.92520 7.99963 8.42834 9.22061 9.94744 10.14664 11.41971 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010013 B = 0.002668 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2795.683269 B =10492.282860 C =12474.842157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.143 3.857 3 H 0.091 0.909 4 C -0.123 4.123 5 C -0.131 4.131 6 C 0.157 3.843 7 N -0.758 5.758 8 C -0.244 4.244 9 H 0.090 0.910 10 C 0.003 3.997 11 N -0.935 5.935 12 Si 0.885 3.115 13 H -0.284 1.284 14 H -0.290 1.290 15 H -0.277 1.277 16 N -0.709 5.709 17 C 0.597 3.403 18 O -0.537 6.537 19 C -0.304 4.304 20 C 0.097 3.903 21 N -0.474 5.474 22 C 0.053 3.947 23 C 0.008 3.992 24 C -0.136 4.136 25 C -0.158 4.158 26 C -0.134 4.134 27 S 0.229 5.771 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.025 0.975 36 H 0.026 0.974 37 H 0.360 0.640 38 H 0.259 0.741 39 H 0.401 0.599 40 H 0.181 0.819 41 H 0.058 0.942 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.064 0.936 45 H 0.078 0.922 46 H 0.065 0.935 47 H 0.068 0.932 48 H 0.067 0.933 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.178 2.037 27.471 31.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.038 3.962 3 H 0.109 0.891 4 C -0.161 4.161 5 C -0.169 4.169 6 C 0.030 3.970 7 N -0.404 5.404 8 C -0.374 4.374 9 H 0.108 0.892 10 C -0.193 4.193 11 N -0.583 5.583 12 Si 0.715 3.285 13 H -0.211 1.211 14 H -0.217 1.217 15 H -0.204 1.204 16 N -0.360 5.360 17 C 0.382 3.618 18 O -0.416 6.416 19 C -0.428 4.428 20 C -0.062 4.062 21 N -0.187 5.187 22 C -0.221 4.221 23 C 0.004 3.996 24 C -0.195 4.195 25 C -0.216 4.216 26 C -0.193 4.193 27 S 0.489 5.511 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.043 0.957 36 H 0.044 0.956 37 H 0.193 0.807 38 H 0.069 0.931 39 H 0.236 0.764 40 H 0.198 0.802 41 H 0.077 0.923 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.083 0.917 45 H 0.097 0.903 46 H 0.084 0.916 47 H 0.087 0.913 48 H 0.086 0.914 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.315 3.283 27.848 32.442 hybrid contribution 0.918 -0.532 -0.110 1.067 sum -15.397 2.751 27.738 31.844 Atomic orbital electron populations 1.22177 0.95096 1.02210 1.02602 1.21123 0.93871 0.97816 0.83343 0.89064 1.21852 0.96585 1.01065 0.96631 1.21797 0.94110 1.01445 0.99513 1.20626 0.84884 0.97080 0.94421 1.42738 1.01745 1.66980 1.28887 1.19072 0.89891 1.27292 1.01146 0.89234 1.24680 0.96198 1.00540 0.97834 1.69703 1.07303 1.49395 1.31882 0.86542 0.79757 0.79998 0.82215 1.21083 1.21665 1.20369 1.45868 1.66885 1.14123 1.09170 1.16683 0.77388 0.85937 0.81805 1.90839 1.50778 1.14991 1.84968 1.25842 1.17151 0.99311 1.00533 1.22191 0.95917 0.92718 0.95341 1.66016 1.17679 1.35168 0.99862 1.27645 1.01058 0.93123 1.00323 1.19312 0.97351 0.97382 0.85539 1.21865 0.92675 1.02299 1.02629 1.22072 1.02831 0.95696 1.00991 1.21845 0.98682 0.98074 1.00693 1.84045 1.56072 1.11792 0.99191 0.91261 0.92358 0.92272 0.91094 0.89823 0.91927 0.92159 0.95661 0.95622 0.80733 0.93066 0.76357 0.80249 0.92318 0.91365 0.91193 0.91690 0.90316 0.91636 0.91255 0.91387 0.92448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 9.48 37.16 0.35 -1.15 16 2 C 0.14 1.52 2.57 -67.93 -0.17 1.34 16 3 H 0.09 1.14 7.58 -51.93 -0.39 0.75 16 4 C -0.12 -1.32 4.75 -26.73 -0.13 -1.45 16 5 C -0.13 -1.90 5.22 -26.73 -0.14 -2.04 16 6 C 0.16 2.98 6.26 -4.04 -0.03 2.96 16 7 N -0.76 -18.43 5.41 -59.91 -0.32 -18.75 16 8 C -0.24 -7.06 10.47 -15.06 -0.16 -7.22 16 9 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 10 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16 11 N -0.93 -29.80 13.97 55.49 0.78 -29.02 16 12 Si 0.88 22.62 27.74 -169.99 -4.71 17.91 16 13 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 14 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 15 H -0.28 -6.74 6.52 56.52 0.37 -6.37 16 16 N -0.71 -7.45 4.51 -55.11 -0.25 -7.70 16 17 C 0.60 7.59 7.75 -12.85 -0.10 7.49 16 18 O -0.54 -8.53 16.63 5.20 0.09 -8.44 16 19 C -0.30 -3.44 6.48 -37.10 -0.24 -3.68 16 20 C 0.10 1.00 10.93 -18.85 -0.21 0.79 16 21 N -0.47 -5.11 10.49 -11.50 -0.12 -5.23 16 22 C 0.05 0.50 5.78 -13.29 -0.08 0.42 16 23 C 0.01 0.05 0.99 -155.66 -0.15 -0.10 16 24 C -0.14 -0.91 8.45 37.16 0.31 -0.60 16 25 C -0.16 -0.81 7.53 37.16 0.28 -0.53 16 26 C -0.13 -0.80 8.45 37.15 0.31 -0.49 16 27 S 0.23 2.25 21.38 -107.50 -2.30 -0.05 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.06 0.87 7.75 -51.93 -0.40 0.47 16 35 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.36 8.61 5.53 -40.82 -0.23 8.38 16 38 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 39 H 0.40 3.39 7.31 -40.82 -0.30 3.09 16 40 H 0.18 1.41 7.15 -52.49 -0.38 1.03 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 44 H 0.06 0.32 7.92 -51.92 -0.41 -0.10 16 45 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 46 H 0.06 0.35 7.91 -51.93 -0.41 -0.06 16 47 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 49 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 411.14 15.07 6.20 6.20 Total: -1.00 -35.32 411.14 -9.34 -44.66 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -8.45 Total: 4.68 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -0.24 Total: -4.24 kcal Atomic # 7 Polarization: -60.79 SS G_CDS: 0.08 Total: -60.70 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: 0.09 Total: -8.44 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -4.71 Total: 17.91 kcal Atomic # 16 Polarization: 2.25 SS G_CDS: -2.30 Total: -0.05 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -35.32 -9.34 -44.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571326000.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.488 kcal (2) G-P(sol) polarization free energy of solvation -35.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds