Wall clock time and date at job start Tue Mar 31 2020 22:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99728 * 2 1 3 5 5 C 1.53001 * 109.46997 * 174.99904 * 4 2 1 6 6 C 1.52997 * 109.46997 * 179.97438 * 5 4 2 7 7 N 1.46503 * 109.47269 * 180.02562 * 6 5 4 8 8 C 1.36937 * 120.00090 * 180.02562 * 7 6 5 9 9 H 1.08000 * 119.99760 * 359.97438 * 8 7 6 10 10 C 1.38809 * 119.99862 * 180.02562 * 8 7 6 11 11 N 1.31617 * 120.00009 * 180.02562 * 10 8 7 12 12 Si 1.86802 * 120.00041 * 359.97438 * 10 8 7 13 13 H 1.48504 * 109.46835 * 90.00437 * 12 10 8 14 14 H 1.48501 * 109.47185 * 210.00297 * 12 10 8 15 15 H 1.48501 * 109.47243 * 330.00671 * 12 10 8 16 16 N 1.46500 * 109.46998 * 119.99942 * 2 1 3 17 17 C 1.34773 * 119.99910 * 275.00232 * 16 2 1 18 18 O 1.21683 * 120.00267 * 359.97438 * 17 16 2 19 19 C 1.46681 * 119.99868 * 179.97438 * 17 16 2 20 20 C 1.35662 * 126.13481 * 0.02562 * 19 17 16 21 21 N 1.30941 * 114.19583 * 179.97438 * 20 19 17 22 22 C 1.29433 * 117.36231 * 359.97438 * 21 20 19 23 23 C 1.50696 * 124.80141 * 179.97438 * 22 21 20 24 24 C 1.53008 * 109.47237 * 60.02975 * 23 22 21 25 25 C 1.52998 * 109.47246 * 180.02562 * 23 22 21 26 26 C 1.52995 * 109.47532 * 300.02653 * 23 22 21 27 27 S 1.70952 * 110.38925 * 359.72623 * 22 21 20 28 28 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 29 29 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 31 31 H 1.08993 * 109.47322 * 295.00205 * 4 2 1 32 32 H 1.09002 * 109.47196 * 55.00329 * 4 2 1 33 33 H 1.08993 * 109.47331 * 300.00296 * 5 4 2 34 34 H 1.09001 * 109.46791 * 60.00740 * 5 4 2 35 35 H 1.09006 * 109.47271 * 300.00048 * 6 5 4 36 36 H 1.09002 * 109.47196 * 60.00425 * 6 5 4 37 37 H 0.97002 * 119.99507 * 0.02562 * 7 6 5 38 38 H 0.97003 * 119.99940 * 179.97438 * 11 10 8 39 39 H 0.96995 * 120.00293 * 94.99410 * 16 2 1 40 40 H 1.08001 * 122.90122 * 359.96193 * 20 19 17 41 41 H 1.09000 * 109.46952 * 59.99041 * 24 23 22 42 42 H 1.08991 * 109.47356 * 179.97438 * 24 23 22 43 43 H 1.09008 * 109.46504 * 299.99793 * 24 23 22 44 44 H 1.09009 * 109.47075 * 60.00183 * 25 23 22 45 45 H 1.08994 * 109.47872 * 180.02562 * 25 23 22 46 46 H 1.09004 * 109.47339 * 300.00882 * 25 23 22 47 47 H 1.08998 * 109.47167 * 60.00450 * 26 23 22 48 48 H 1.09000 * 109.47514 * 179.97438 * 26 23 22 49 49 H 1.08995 * 109.47411 * 299.99926 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 6 4.0749 -1.3351 -2.5625 7 7 5.5351 -1.2323 -2.6239 8 6 6.2188 -1.8067 -3.6620 9 1 5.6817 -2.3358 -4.4353 10 6 7.6023 -1.7096 -3.7199 11 7 8.2595 -2.2612 -4.7180 12 14 8.5313 -0.7949 -2.3820 13 1 8.8914 -1.7402 -1.2948 14 1 9.7678 -0.2036 -2.9537 15 1 7.6731 0.2860 -1.8340 16 7 2.0184 -0.6906 1.1962 17 6 2.1470 -0.0182 2.3571 18 8 1.8580 1.1625 2.4117 19 6 2.6354 -0.7098 3.5549 20 6 2.9920 -2.0163 3.6348 21 7 3.3968 -2.3905 4.8226 22 6 3.4094 -1.4943 5.7564 23 6 3.8417 -1.7404 7.1789 24 6 5.2971 -2.2123 7.1953 25 6 3.7170 -0.4438 7.9814 26 6 2.9501 -2.8150 7.8042 27 16 2.8729 0.0097 5.1459 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.7517 -1.7715 -1.2055 32 1 1.6055 -0.2618 -2.1370 33 1 3.8532 0.4369 -1.3573 34 1 3.9995 -1.0729 -0.4259 35 1 3.7866 -2.3854 -2.5183 36 1 3.6404 -0.8760 -3.4505 37 1 6.0174 -0.7573 -1.9292 38 1 9.2263 -2.1931 -4.7586 39 1 2.2490 -1.6317 1.1527 40 1 2.9459 -2.6896 2.7916 41 1 5.9323 -1.4468 6.7497 42 1 5.6099 -2.3899 8.2241 43 1 5.3859 -3.1362 6.6235 44 1 2.6802 -0.1076 7.9698 45 1 4.0301 -0.6217 9.0102 46 1 4.3522 0.3218 7.5359 47 1 3.0390 -3.7388 7.2326 48 1 3.2631 -2.9934 8.8330 49 1 1.9133 -2.4789 7.7926 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571326000.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:36 Heat of formation + Delta-G solvation = -29.647435 kcal Electronic energy + Delta-G solvation = -26661.641858 eV Core-core repulsion = 22942.032429 eV Total energy + Delta-G solvation = -3719.609429 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.42414 -40.54079 -38.08739 -37.63503 -36.65510 -34.30462 -33.14672 -31.63608 -30.37574 -28.37009 -28.20510 -27.40650 -27.00987 -24.57485 -23.47591 -22.56885 -22.24285 -21.55684 -20.38253 -19.63871 -18.83293 -18.23466 -17.26626 -16.64639 -16.47349 -16.06471 -15.92057 -15.78803 -15.64355 -15.49997 -15.10763 -14.98033 -14.67353 -14.56198 -14.49530 -13.91879 -13.59896 -13.52423 -13.23140 -13.12641 -13.09626 -12.86548 -12.68476 -12.63742 -12.51490 -12.40892 -12.14988 -12.07347 -12.01905 -11.97666 -11.89277 -11.78370 -11.57330 -11.42565 -10.99288 -10.62053 -10.57988 -10.24100 -9.95602 -9.31722 -8.05788 -5.38953 -0.85064 0.07301 0.61683 1.34370 1.34807 1.37443 1.44961 2.06968 2.15019 2.45049 2.88398 3.25696 3.46280 3.63656 3.69154 3.86034 3.90174 3.96076 4.07267 4.10482 4.14515 4.26068 4.37400 4.53662 4.61587 4.66433 4.71374 4.80464 4.82629 4.82714 4.84099 4.87818 4.93975 4.94683 4.97792 5.02362 5.10209 5.21780 5.29428 5.30996 5.33488 5.36189 5.40442 5.49856 5.73397 6.19043 6.35825 6.52525 7.03552 7.05376 7.82843 8.00380 9.15806 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010013 B = 0.002668 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2795.683269 B =10492.282860 C =12474.842157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.145 3.855 3 H 0.071 0.929 4 C -0.111 4.111 5 C -0.119 4.119 6 C 0.152 3.848 7 N -0.763 5.763 8 C -0.236 4.236 9 H 0.058 0.942 10 C -0.065 4.065 11 N -0.983 5.983 12 Si 0.955 3.045 13 H -0.277 1.277 14 H -0.294 1.294 15 H -0.257 1.257 16 N -0.699 5.699 17 C 0.596 3.404 18 O -0.577 6.577 19 C -0.330 4.330 20 C 0.104 3.896 21 N -0.496 5.496 22 C 0.062 3.938 23 C 0.004 3.996 24 C -0.134 4.134 25 C -0.158 4.158 26 C -0.131 4.131 27 S 0.228 5.772 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.043 0.957 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.031 0.969 36 H 0.024 0.976 37 H 0.364 0.636 38 H 0.258 0.742 39 H 0.413 0.587 40 H 0.201 0.799 41 H 0.051 0.949 42 H 0.090 0.910 43 H 0.054 0.946 44 H 0.066 0.934 45 H 0.099 0.901 46 H 0.062 0.938 47 H 0.055 0.945 48 H 0.089 0.911 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.956 2.090 29.881 34.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.041 3.959 3 H 0.089 0.911 4 C -0.149 4.149 5 C -0.157 4.157 6 C 0.026 3.974 7 N -0.409 5.409 8 C -0.367 4.367 9 H 0.076 0.924 10 C -0.256 4.256 11 N -0.634 5.634 12 Si 0.782 3.218 13 H -0.203 1.203 14 H -0.220 1.220 15 H -0.181 1.181 16 N -0.351 5.351 17 C 0.382 3.618 18 O -0.459 6.459 19 C -0.454 4.454 20 C -0.055 4.055 21 N -0.209 5.209 22 C -0.212 4.212 23 C 0.000 4.000 24 C -0.193 4.193 25 C -0.215 4.215 26 C -0.190 4.190 27 S 0.489 5.511 28 H 0.100 0.900 29 H 0.091 0.909 30 H 0.062 0.938 31 H 0.108 0.892 32 H 0.113 0.887 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.049 0.951 36 H 0.042 0.958 37 H 0.197 0.803 38 H 0.067 0.933 39 H 0.250 0.750 40 H 0.217 0.783 41 H 0.070 0.930 42 H 0.109 0.891 43 H 0.073 0.927 44 H 0.085 0.915 45 H 0.118 0.882 46 H 0.081 0.919 47 H 0.074 0.926 48 H 0.108 0.892 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.145 3.324 30.270 34.946 hybrid contribution 1.099 -0.628 -0.880 1.541 sum -16.047 2.696 29.390 33.593 Atomic orbital electron populations 1.22111 0.93662 1.03143 1.02473 1.21067 0.94899 0.96736 0.83176 0.91107 1.21767 0.93600 1.02466 0.97078 1.21674 0.96691 1.00136 0.97185 1.20856 0.81993 0.97964 0.96594 1.42816 1.03876 1.66534 1.27674 1.19079 0.90166 1.26165 1.01272 0.92366 1.25517 0.97322 1.02225 1.00563 1.69880 1.07517 1.51596 1.34371 0.85411 0.78115 0.79141 0.79117 1.20282 1.22036 1.18144 1.45830 1.66071 1.14588 1.08604 1.16869 0.76864 0.85518 0.82529 1.90812 1.52791 1.16643 1.85632 1.25787 1.19028 0.99921 1.00704 1.22532 0.94531 0.92589 0.95827 1.66106 1.18799 1.35716 1.00326 1.28222 0.99291 0.92525 1.01177 1.19535 0.97515 0.98643 0.84283 1.21861 0.92414 1.01245 1.03744 1.22100 1.03051 0.94574 1.01817 1.21834 0.98549 0.96980 1.01601 1.84014 1.56135 1.12158 0.98785 0.89989 0.90854 0.93831 0.89157 0.88712 0.92791 0.91859 0.95138 0.95773 0.80348 0.93277 0.75022 0.78268 0.93007 0.89123 0.92686 0.91476 0.88218 0.91935 0.92617 0.89219 0.92468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.56 9.48 71.98 0.68 -1.88 16 2 C 0.15 2.84 2.57 44.99 0.12 2.95 16 3 H 0.07 1.72 7.58 -2.39 -0.02 1.70 16 4 C -0.11 -2.08 4.75 30.59 0.15 -1.94 16 5 C -0.12 -3.21 5.22 30.59 0.16 -3.05 16 6 C 0.15 5.53 6.26 86.38 0.54 6.07 16 7 N -0.76 -36.27 5.41 -343.44 -1.86 -38.13 16 8 C -0.24 -13.72 10.47 84.03 0.88 -12.84 16 9 H 0.06 3.68 8.06 -2.91 -0.02 3.66 16 10 C -0.06 -3.89 5.50 84.86 0.47 -3.42 16 11 N -0.98 -63.84 13.97 21.65 0.30 -63.54 16 12 Si 0.95 46.53 27.74 68.60 1.90 48.44 16 13 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 14 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 15 H -0.26 -11.47 6.52 99.48 0.65 -10.83 16 16 N -0.70 -13.64 4.51 -446.50 -2.02 -15.65 16 17 C 0.60 14.85 7.75 86.45 0.67 15.52 16 18 O -0.58 -18.47 16.63 -4.29 -0.07 -18.54 16 19 C -0.33 -7.26 6.48 23.88 0.15 -7.10 16 20 C 0.10 2.02 10.93 84.23 0.92 2.94 16 21 N -0.50 -10.19 10.49 -190.30 -2.00 -12.19 16 22 C 0.06 1.10 5.78 88.46 0.51 1.61 16 23 C 0.00 0.05 0.99 -52.93 -0.05 0.00 16 24 C -0.13 -1.58 8.45 71.98 0.61 -0.97 16 25 C -0.16 -1.29 7.53 71.98 0.54 -0.75 16 26 C -0.13 -1.32 8.45 71.98 0.61 -0.72 16 27 S 0.23 4.39 21.38 -56.49 -1.21 3.18 16 28 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.06 1.68 7.75 -2.39 -0.02 1.66 16 35 H 0.03 1.10 8.14 -2.38 -0.02 1.08 16 36 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.36 16.66 5.53 -92.71 -0.51 16.15 16 38 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 39 H 0.41 6.05 7.31 -92.71 -0.68 5.38 16 40 H 0.20 2.76 7.15 -2.91 -0.02 2.73 16 41 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 44 H 0.07 0.53 7.92 -2.38 -0.02 0.51 16 45 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 46 H 0.06 0.56 7.91 -2.39 -0.02 0.54 16 47 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 49 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 Total: -1.00 -77.40 411.14 1.70 -75.70 By element: Atomic # 1 Polarization: 24.62 SS G_CDS: -0.31 Total: 24.31 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: 6.95 Total: -3.57 kcal Atomic # 7 Polarization: -123.94 SS G_CDS: -5.57 Total: -129.51 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.07 Total: -18.54 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 1.90 Total: 48.44 kcal Atomic # 16 Polarization: 4.39 SS G_CDS: -1.21 Total: 3.18 kcal Total: -77.40 1.70 -75.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571326000.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.049 kcal (2) G-P(sol) polarization free energy of solvation -77.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds